Wall clock time and date at job start Tue Mar 31 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47108 * 2 1 4 4 C 1.53000 * 109.47200 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47139 * 179.97438 * 4 3 2 6 6 C 1.36942 * 119.99950 * 270.00260 * 5 4 3 7 7 H 1.08004 * 119.99695 * 142.33393 * 6 5 4 8 8 C 1.38807 * 120.00394 * 322.33358 * 6 5 4 9 9 N 1.31622 * 120.00181 * 157.73687 * 8 6 5 10 10 Si 1.86806 * 120.00048 * 337.74642 * 8 6 5 11 11 H 1.48500 * 109.47115 * 95.30854 * 10 8 6 12 12 H 1.48494 * 109.46941 * 215.31551 * 10 8 6 13 13 H 1.48497 * 109.46686 * 335.31232 * 10 8 6 14 14 C 1.46499 * 119.99957 * 90.00362 * 5 4 3 15 15 C 1.50704 * 109.47149 * 91.95915 * 14 5 4 16 16 N 1.31870 * 119.62448 * 273.85695 * 15 14 5 17 17 C 1.31852 * 121.74042 * 179.97438 * 16 15 14 18 18 C 1.38241 * 120.78693 * 359.73447 * 17 16 15 19 19 C 1.38600 * 119.17431 * 0.51462 * 18 17 16 20 20 C 1.50704 * 120.79429 * 179.77439 * 19 18 17 21 21 C 1.38305 * 119.62449 * 93.83089 * 15 14 5 22 22 Cl 1.73596 * 120.43350 * 0.04468 * 21 15 14 23 23 H 1.09004 * 109.47348 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47673 * 299.99807 * 1 2 3 25 25 H 1.09000 * 109.47025 * 60.00335 * 1 2 3 26 26 H 1.08993 * 109.47605 * 239.99562 * 2 1 3 27 27 H 1.09000 * 109.47025 * 119.99664 * 2 1 3 28 28 H 1.09001 * 109.47353 * 59.99964 * 3 2 1 29 29 H 1.09000 * 109.46904 * 299.99738 * 3 2 1 30 30 H 1.09008 * 109.46955 * 60.00145 * 4 3 2 31 31 H 1.08998 * 109.47230 * 300.00464 * 4 3 2 32 32 H 0.97003 * 119.99967 * 180.02562 * 9 8 6 33 33 H 1.09000 * 109.47054 * 331.96170 * 14 5 4 34 34 H 1.09000 * 109.47327 * 211.95800 * 14 5 4 35 35 H 1.07998 * 119.60727 * 179.97438 * 17 16 15 36 36 H 1.08000 * 120.40569 * 180.28630 * 18 17 16 37 37 H 1.08992 * 109.47133 * 269.72032 * 20 19 18 38 38 H 1.08998 * 109.47255 * 149.71630 * 20 19 18 39 39 H 1.09005 * 109.47064 * 29.72280 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0582 2.8237 0.0000 6 6 4.2869 3.4686 -1.1862 7 1 4.0518 4.5181 -1.2843 8 6 4.8208 2.7734 -2.2625 9 7 4.6447 3.2209 -3.4877 10 14 5.7892 1.2026 -1.9721 11 1 4.8897 0.0310 -2.1255 12 1 6.8934 1.1119 -2.9608 13 1 6.3543 1.2163 -0.5989 14 6 4.3019 3.5151 1.2684 15 6 5.7383 3.3184 1.6798 16 7 6.0787 2.2452 2.3664 17 6 7.3227 2.0311 2.7472 18 6 8.3240 2.9307 2.4321 19 6 8.0046 4.0736 1.7161 20 6 9.0663 5.0812 1.3573 21 6 6.6847 4.2654 1.3326 22 17 6.2274 5.6754 0.4291 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9336 0.9286 -0.8892 31 1 3.9329 0.9288 0.8908 32 1 5.0175 2.7348 -4.2399 33 1 3.6449 3.1072 2.0366 34 1 4.1014 4.5795 1.1465 35 1 7.5630 1.1404 3.3088 36 1 9.3417 2.7469 2.7433 37 1 9.1406 5.8279 2.1478 38 1 8.8016 5.5698 0.4196 39 1 10.0249 4.5745 1.2449 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235588716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:35 Heat of formation + Delta-G solvation = 33.697735 kcal Electronic energy + Delta-G solvation = -20593.825162 eV Core-core repulsion = 17562.495266 eV Total energy + Delta-G solvation = -3031.329896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.90425 -36.59568 -35.99383 -34.14957 -33.41784 -31.88253 -30.73953 -28.29349 -27.57051 -26.21082 -23.67278 -22.80027 -21.70714 -20.59636 -19.94975 -16.89296 -16.33035 -16.12274 -15.52637 -15.09940 -14.72809 -14.47357 -13.76660 -13.63280 -13.21329 -12.94852 -12.71726 -12.58134 -12.51502 -12.35396 -11.95002 -11.82764 -11.44399 -11.32630 -11.23425 -10.98052 -10.78008 -10.49093 -10.43076 -10.20903 -10.02920 -9.62402 -9.47672 -9.08549 -9.07181 -8.53606 -8.26967 -6.86420 -6.00356 -3.38877 1.40364 1.52619 2.69077 3.31767 3.46625 3.55560 4.04613 4.53076 4.79688 4.88091 4.94454 5.04169 5.30690 5.38717 5.46093 5.56498 5.58656 5.61239 5.65537 5.67430 5.93642 5.98899 6.02106 6.14846 6.22163 6.32034 6.38101 6.40967 6.44570 6.49743 6.53446 6.60793 6.71329 6.97432 6.99265 7.17305 8.04552 8.37847 8.40313 8.97260 9.69996 10.09288 11.14493 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.016424 B = 0.007003 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.389125 B = 3997.239659 C = 4477.443296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.130 4.130 4 C 0.138 3.862 5 N -0.586 5.586 6 C -0.254 4.254 7 H 0.086 0.914 8 C 0.043 3.957 9 N -0.894 5.894 10 Si 0.869 3.131 11 H -0.285 1.285 12 H -0.304 1.304 13 H -0.269 1.269 14 C 0.184 3.816 15 C 0.141 3.859 16 N -0.474 5.474 17 C 0.097 3.903 18 C -0.188 4.188 19 C -0.043 4.043 20 C -0.117 4.117 21 C -0.075 4.075 22 Cl -0.042 7.042 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.151 0.849 36 H 0.131 0.869 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.449 -0.290 11.476 11.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.170 4.170 4 C 0.013 3.987 5 N -0.306 5.306 6 C -0.383 4.383 7 H 0.104 0.896 8 C -0.159 4.159 9 N -0.535 5.535 10 Si 0.700 3.300 11 H -0.213 1.213 12 H -0.233 1.233 13 H -0.194 1.194 14 C 0.057 3.943 15 C 0.000 4.000 16 N -0.184 5.184 17 C -0.061 4.061 18 C -0.209 4.209 19 C -0.052 4.052 20 C -0.173 4.173 21 C -0.105 4.105 22 Cl -0.013 7.013 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.168 0.832 36 H 0.149 0.851 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.757 -0.766 11.386 11.740 hybrid contribution 1.597 -0.449 -0.382 1.702 sum 4.354 -1.215 11.004 11.896 Atomic orbital electron populations 1.21744 0.96511 1.00598 1.01610 1.21510 0.95246 0.98327 1.01249 1.22052 0.98142 0.94752 1.02037 1.21193 0.92187 0.85937 0.99396 1.44312 1.73000 1.12001 1.01279 1.18834 1.36533 0.96837 0.86047 0.89636 1.25438 0.97511 0.97529 0.95378 1.69847 1.45194 1.40617 0.97814 0.87046 0.80572 0.84507 0.77918 1.21334 1.23260 1.19394 1.20184 0.86512 0.98592 0.89011 1.22785 1.00097 0.87345 0.89797 1.67682 1.19836 1.19416 1.11482 1.22710 0.88513 0.98159 0.96711 1.21800 1.00858 0.95542 1.02651 1.20169 0.93339 0.96025 0.95645 1.20837 0.96339 0.97366 1.02791 1.21748 0.94462 0.93268 1.01049 1.98357 1.92187 1.37946 1.72785 0.93600 0.93099 0.92809 0.92547 0.92737 0.92896 0.91326 0.93268 0.93658 0.92758 0.91922 0.90622 0.83195 0.85078 0.90600 0.90378 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.15 0.37 -1.65 16 2 C -0.13 -2.03 5.93 -26.73 -0.16 -2.19 16 3 C -0.13 -2.48 5.54 -26.73 -0.15 -2.63 16 4 C 0.14 3.04 4.50 -4.04 -0.02 3.02 16 5 N -0.59 -13.70 2.06 -174.61 -0.36 -14.06 16 6 C -0.25 -6.80 9.39 -15.06 -0.14 -6.94 16 7 H 0.09 2.46 8.06 -52.48 -0.42 2.04 16 8 C 0.04 1.21 5.30 -17.43 -0.09 1.12 16 9 N -0.89 -26.91 13.97 55.49 0.78 -26.14 16 10 Si 0.87 22.88 25.05 -169.99 -4.26 18.62 16 11 H -0.29 -7.34 6.67 56.52 0.38 -6.97 16 12 H -0.30 -8.20 7.11 56.52 0.40 -7.79 16 13 H -0.27 -7.21 7.11 56.52 0.40 -6.81 16 14 C 0.18 3.76 5.65 -5.19 -0.03 3.73 16 15 C 0.14 2.84 6.36 -82.55 -0.53 2.32 16 16 N -0.47 -9.16 10.27 -9.44 -0.10 -9.25 16 17 C 0.10 1.55 11.18 -17.54 -0.20 1.36 16 18 C -0.19 -2.78 9.82 -39.45 -0.39 -3.16 16 19 C -0.04 -0.71 5.92 -104.29 -0.62 -1.32 16 20 C -0.12 -1.50 9.69 36.01 0.35 -1.15 16 21 C -0.08 -1.43 6.33 -39.36 -0.25 -1.68 16 22 Cl -0.04 -0.78 25.22 -51.86 -1.31 -2.09 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.05 1.21 3.27 -51.92 -0.17 1.04 16 31 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 34 H 0.08 1.51 6.65 -51.93 -0.35 1.16 16 35 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.08 7.03 -51.93 -0.37 0.72 16 39 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -30.72 331.78 -8.04 -38.77 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.95 Total: -1.66 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -1.85 Total: -9.19 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.32 Total: -49.45 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.26 Total: 18.62 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.31 Total: -2.09 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.72 -8.04 -38.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235588716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.464 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds