Wall clock time and date at job start Tue Mar 31 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46997 * 2 1 4 4 C 1.52994 * 109.47142 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47263 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99540 * 269.99724 * 5 4 3 7 7 H 1.07995 * 120.00214 * 325.99758 * 6 5 4 8 8 C 1.38808 * 119.99860 * 145.99769 * 6 5 4 9 9 N 1.31618 * 120.00248 * 337.88142 * 8 6 5 10 10 Si 1.86799 * 120.00061 * 157.88413 * 8 6 5 11 11 H 1.48503 * 109.47190 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.47304 * 119.99846 * 10 8 6 13 13 H 1.48503 * 109.47411 * 239.99751 * 10 8 6 14 14 C 1.46500 * 120.00586 * 89.99417 * 5 4 3 15 15 C 1.50695 * 109.46979 * 84.26917 * 14 5 4 16 16 C 1.38237 * 119.60452 * 95.21287 * 15 14 5 17 17 C 1.38601 * 119.17718 * 179.97438 * 16 15 14 18 18 C 1.50702 * 120.79580 * 179.97438 * 17 16 15 19 19 C 1.38781 * 118.41095 * 0.02562 * 17 16 15 20 20 Cl 1.73605 * 120.43277 * 179.97438 * 19 17 16 21 21 C 1.38305 * 119.13858 * 0.02562 * 19 17 16 22 22 N 1.31851 * 119.60573 * 274.94483 * 15 14 5 23 23 H 1.08996 * 109.47193 * 300.00096 * 1 2 3 24 24 H 1.09001 * 109.47111 * 60.00500 * 1 2 3 25 25 H 1.09002 * 109.46914 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47193 * 239.99904 * 2 1 3 27 27 H 1.09001 * 109.47111 * 119.99500 * 2 1 3 28 28 H 1.08998 * 109.47238 * 59.99377 * 3 2 1 29 29 H 1.09001 * 109.46782 * 299.99701 * 3 2 1 30 30 H 1.08998 * 109.47675 * 59.99506 * 4 3 2 31 31 H 1.09001 * 109.46925 * 299.99476 * 4 3 2 32 32 H 0.97004 * 120.00376 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.46790 * 324.27097 * 14 5 4 34 34 H 1.08999 * 109.47161 * 204.27353 * 14 5 4 35 35 H 1.08003 * 120.40856 * 0.02562 * 16 15 14 36 36 H 1.09010 * 109.46937 * 89.99898 * 18 17 16 37 37 H 1.08996 * 109.47678 * 209.99657 * 18 17 16 38 38 H 1.09000 * 109.47071 * 330.00768 * 18 17 16 39 39 H 1.07994 * 119.62803 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2860 3.4700 -1.1857 7 1 4.6450 2.9176 -2.0415 8 6 4.0555 4.8350 -1.2877 9 7 3.2375 5.4290 -0.4450 10 14 4.9063 5.8289 -2.6210 11 1 5.7680 4.9324 -3.4330 12 1 3.8855 6.4593 -3.4961 13 1 5.7415 6.8850 -1.9945 14 6 4.3029 3.5138 1.2689 15 6 5.6787 3.1633 1.7742 16 6 6.7425 4.0009 1.4953 17 6 8.0039 3.6702 1.9649 18 6 9.1894 4.5565 1.6818 19 6 8.1494 2.5027 2.7010 20 17 9.7057 2.0378 3.3139 21 6 7.0386 1.7139 2.9391 22 7 5.8524 2.0642 2.4815 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9288 -0.8908 31 1 3.9336 0.9287 0.8892 32 1 3.0767 6.3830 -0.5160 33 1 3.5571 3.2036 2.0008 34 1 4.2355 4.5909 1.1157 35 1 6.5923 4.9021 0.9195 36 1 9.2904 5.2936 2.4786 37 1 10.0933 3.9495 1.6318 38 1 9.0418 5.0679 0.7306 39 1 7.1429 0.8035 3.5107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238420534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:41 Heat of formation + Delta-G solvation = 22.991990 kcal Electronic energy + Delta-G solvation = -20068.236996 eV Core-core repulsion = 17036.442863 eV Total energy + Delta-G solvation = -3031.794132 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.84184 -36.61284 -36.10745 -34.08273 -33.50069 -31.56600 -30.78030 -27.92530 -27.52198 -25.99692 -23.86310 -22.82654 -21.44886 -20.52413 -19.75412 -16.94138 -16.34892 -16.16888 -15.11561 -14.78436 -14.64532 -14.37731 -13.77299 -13.51229 -13.41315 -13.03893 -12.65809 -12.55588 -12.37858 -12.12383 -11.89061 -11.61360 -11.52423 -11.22720 -11.05570 -10.89380 -10.74493 -10.56748 -10.45010 -10.30000 -10.10684 -9.94100 -9.62033 -9.07288 -9.03490 -8.58338 -8.31086 -6.74645 -5.93700 -3.42288 1.42863 1.61821 2.31392 3.26517 3.37235 3.40190 4.12786 4.40972 4.83582 4.93079 5.04943 5.24436 5.39179 5.40658 5.50790 5.66559 5.66836 5.70438 5.76305 5.90940 6.07769 6.11624 6.18547 6.25838 6.27411 6.42482 6.48344 6.50618 6.57438 6.72825 6.74934 6.89304 7.10406 7.12516 7.31213 7.46481 7.72420 8.36391 8.51483 9.05156 9.68683 10.26445 11.08800 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.012721 B = 0.006096 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.518705 B = 4592.093922 C = 6396.741725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.147 3.853 5 N -0.570 5.570 6 C -0.253 4.253 7 H 0.064 0.936 8 C 0.010 3.990 9 N -0.883 5.883 10 Si 0.892 3.108 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.286 1.286 14 C 0.185 3.815 15 C 0.143 3.857 16 C -0.145 4.145 17 C -0.041 4.041 18 C -0.117 4.117 19 C -0.114 4.114 20 Cl -0.080 7.080 21 C 0.111 3.889 22 N -0.474 5.474 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.257 0.743 33 H 0.044 0.956 34 H 0.117 0.883 35 H 0.139 0.861 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.288 -4.649 5.530 9.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.171 4.171 4 C 0.021 3.979 5 N -0.288 5.288 6 C -0.383 4.383 7 H 0.081 0.919 8 C -0.190 4.190 9 N -0.526 5.526 10 Si 0.721 3.279 11 H -0.200 1.200 12 H -0.215 1.215 13 H -0.213 1.213 14 C 0.058 3.942 15 C 0.004 3.996 16 C -0.166 4.166 17 C -0.049 4.049 18 C -0.173 4.173 19 C -0.144 4.144 20 Cl -0.051 7.051 21 C -0.048 4.048 22 N -0.184 5.184 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.605 -5.040 5.713 9.458 hybrid contribution 1.365 1.031 -0.824 1.898 sum 6.969 -4.009 4.889 9.410 Atomic orbital electron populations 1.21757 0.96812 1.00369 1.01641 1.21519 0.95045 0.98598 1.00924 1.22101 0.98897 0.94024 1.02057 1.20972 0.91491 0.86679 0.98788 1.43746 1.73016 1.10611 1.01475 1.19177 1.37625 0.91353 0.90098 0.91875 1.25084 0.97352 0.98503 0.98085 1.69980 1.33364 1.10379 1.38862 0.86392 0.79554 0.80224 0.81741 1.20040 1.21481 1.21259 1.20099 0.85715 1.01765 0.86630 1.23265 1.00289 0.87838 0.88250 1.21981 0.91302 1.02189 1.01121 1.20184 0.96243 0.93664 0.94794 1.20835 0.95205 0.98702 1.02594 1.21815 0.87554 0.99151 1.05870 1.98311 1.28274 1.92016 1.86524 1.22678 0.86819 0.98226 0.97090 1.67843 1.22754 1.17238 1.10588 0.93079 0.92994 0.93747 0.92815 0.92821 0.92910 0.92000 0.94315 0.93649 0.93329 0.93728 0.86572 0.84286 0.90622 0.90938 0.90754 0.83077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.71 16 2 C -0.12 -1.93 5.93 -26.73 -0.16 -2.09 16 3 C -0.13 -2.56 5.54 -26.73 -0.15 -2.71 16 4 C 0.15 3.11 5.69 -4.04 -0.02 3.08 16 5 N -0.57 -13.62 2.44 -174.61 -0.43 -14.05 16 6 C -0.25 -6.55 9.49 -15.06 -0.14 -6.69 16 7 H 0.06 1.67 7.92 -52.49 -0.42 1.25 16 8 C 0.01 0.25 4.92 -17.43 -0.09 0.17 16 9 N -0.88 -23.64 11.34 55.49 0.63 -23.01 16 10 Si 0.89 20.38 29.61 -169.99 -5.03 15.35 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.19 4.22 5.54 -5.20 -0.03 4.20 16 15 C 0.14 2.95 6.35 -82.59 -0.52 2.42 16 16 C -0.14 -2.75 9.43 -39.45 -0.37 -3.12 16 17 C -0.04 -0.67 5.92 -104.29 -0.62 -1.28 16 18 C -0.12 -1.53 9.69 36.01 0.35 -1.18 16 19 C -0.11 -1.81 6.34 -39.36 -0.25 -2.06 16 20 Cl -0.08 -1.05 27.48 -51.86 -1.42 -2.48 16 21 C 0.11 1.84 10.99 -17.51 -0.19 1.65 16 22 N -0.47 -9.20 10.23 -9.45 -0.10 -9.30 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.04 0.82 8.04 -51.93 -0.42 0.40 16 31 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 32 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 33 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 34 H 0.12 2.89 5.25 -51.93 -0.27 2.61 16 35 H 0.14 2.68 8.06 -52.48 -0.42 2.26 16 36 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 37 H 0.07 0.88 7.03 -51.93 -0.36 0.52 16 38 H 0.07 0.95 8.10 -51.93 -0.42 0.52 16 39 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 340.20 15.07 5.13 5.13 Total: -1.00 -26.63 340.20 -9.14 -35.77 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.09 Total: 1.91 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.83 Total: -9.32 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.11 Total: -46.36 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.42 Total: -2.48 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -26.63 -9.14 -35.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238420534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.763 kcal (2) G-P(sol) polarization free energy of solvation -26.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds