Wall clock time and date at job start Tue Mar 31 2020 05:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38196 * 119.60890 * 84.72405 * 4 2 1 6 6 C 1.38670 * 119.18735 * 179.77569 * 5 4 2 7 7 C 1.38601 * 118.44162 * 0.48840 * 6 5 4 8 8 C 1.50695 * 120.42665 * 179.77467 * 7 6 5 9 9 N 1.46900 * 109.47046 * 104.97641 * 8 7 6 10 10 C 1.46889 * 111.00553 * 293.95617 * 9 8 7 11 11 C 1.46903 * 110.99981 * 169.99791 * 9 8 7 12 12 C 1.50697 * 109.47213 * 190.00444 * 11 9 8 13 13 H 1.07999 * 119.99977 * 0.02562 * 12 11 9 14 14 C 1.37879 * 119.99762 * 180.02562 * 12 11 9 15 15 N 1.31508 * 120.00290 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99853 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47157 * 89.99725 * 16 14 12 18 18 H 1.48496 * 109.47537 * 209.99631 * 16 14 12 19 19 H 1.48501 * 109.47174 * 330.00035 * 16 14 12 20 20 C 1.38356 * 119.14828 * 359.75238 * 7 6 5 21 21 Cl 1.73602 * 119.63090 * 179.97438 * 20 7 6 22 22 N 1.31875 * 119.61235 * 264.99748 * 4 2 1 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.07996 * 120.40356 * 359.97438 * 5 4 2 31 31 H 1.08008 * 120.77530 * 180.22070 * 6 5 4 32 32 H 1.09002 * 109.47085 * 224.98108 * 8 7 6 33 33 H 1.09002 * 109.47221 * 344.98043 * 8 7 6 34 34 H 1.08999 * 109.47127 * 59.99578 * 10 9 8 35 35 H 1.08995 * 109.47607 * 179.97438 * 10 9 8 36 36 H 1.09000 * 109.47010 * 300.00239 * 10 9 8 37 37 H 1.09004 * 109.47225 * 310.00511 * 11 9 8 38 38 H 1.08997 * 109.47115 * 70.00273 * 11 9 8 39 39 H 0.97000 * 120.00233 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1558 -0.0145 -2.4181 6 6 2.6233 -0.6756 -3.5438 7 6 2.9410 -2.0204 -3.4352 8 6 3.4480 -2.7838 -4.6315 9 7 4.8938 -3.0048 -4.4944 10 6 5.6287 -1.7344 -4.5535 11 6 5.3819 -3.9432 -5.5139 12 6 6.8020 -4.3353 -5.1969 13 1 7.2928 -3.9285 -4.3251 14 6 7.4747 -5.2135 -6.0199 15 7 6.8770 -5.7092 -7.0812 16 14 9.2353 -5.6990 -5.6275 17 1 9.2347 -6.9029 -4.7580 18 1 9.9589 -5.9999 -6.8889 19 1 9.9121 -4.5803 -4.9233 20 6 2.7870 -2.6528 -2.2143 21 17 3.1805 -4.3370 -2.0644 22 7 2.3438 -1.9900 -1.1626 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.8943 1.0321 -2.4679 31 1 2.7331 -0.1559 -4.4842 32 1 2.9376 -3.7450 -4.6922 33 1 3.2525 -2.2107 -5.5378 34 1 5.2962 -1.0844 -3.7441 35 1 6.6964 -1.9269 -4.4490 36 1 5.4386 -1.2488 -5.5107 37 1 4.7521 -4.8329 -5.5201 38 1 5.3466 -3.4663 -6.4933 39 1 7.3501 -6.3273 -7.6600 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238725909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:37 Heat of formation + Delta-G solvation = 19.016978 kcal Electronic energy + Delta-G solvation = -19814.859051 eV Core-core repulsion = 16782.892550 eV Total energy + Delta-G solvation = -3031.966501 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49546 -37.07608 -36.21379 -35.27586 -32.96432 -32.19301 -30.47979 -27.41767 -27.24254 -26.69873 -24.39024 -23.41922 -22.45299 -20.60114 -20.15077 -16.91400 -16.72085 -16.29633 -15.27842 -15.12268 -14.57464 -14.51821 -14.19776 -13.92502 -13.82671 -13.27152 -13.11193 -12.94688 -12.41631 -12.00759 -11.93313 -11.67152 -11.51687 -11.27862 -11.19551 -11.15096 -11.08124 -10.90663 -10.67448 -10.55847 -10.48716 -9.87371 -9.67294 -9.46982 -9.20524 -8.55549 -8.41512 -7.26612 -6.01660 -4.02388 1.03278 1.24263 2.21338 3.33575 3.39437 3.43023 3.66175 4.16982 4.44187 4.56735 4.81292 4.89758 4.96354 5.02873 5.07196 5.17059 5.29255 5.35309 5.39523 5.49990 5.58057 5.66678 5.72520 5.81892 5.98429 6.01939 6.06261 6.12469 6.17475 6.23445 6.35239 6.56647 6.72979 7.26987 7.31682 7.79577 7.85640 8.07038 8.17938 8.53216 9.04992 9.61574 11.09261 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.029488 B = 0.003962 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.301002 B = 7066.315794 C = 7277.383848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C -0.147 4.147 4 C 0.141 3.859 5 C -0.173 4.173 6 C -0.062 4.062 7 C -0.103 4.103 8 C 0.092 3.908 9 N -0.528 5.528 10 C 0.038 3.962 11 C 0.195 3.805 12 C -0.504 4.504 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.197 3.803 21 Cl -0.010 7.010 22 N -0.482 5.482 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.011 0.989 37 H 0.032 0.968 38 H -0.009 1.009 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.539 13.350 10.407 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 C -0.204 4.204 4 C 0.003 3.997 5 C -0.192 4.192 6 C -0.088 4.088 7 C -0.107 4.107 8 C -0.037 4.037 9 N -0.252 5.252 10 C -0.111 4.111 11 C 0.070 3.930 12 C -0.543 4.543 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.199 1.199 20 C 0.033 3.967 21 Cl 0.019 6.981 22 N -0.193 5.193 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.030 0.970 37 H 0.050 0.950 38 H 0.009 0.991 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.458 12.395 11.497 21.000 hybrid contribution 0.998 0.254 -1.506 1.824 sum -11.460 12.649 9.991 19.778 Atomic orbital electron populations 1.21799 0.93661 1.02387 1.01970 1.20025 0.96098 0.95289 0.94974 1.21921 1.01558 0.94767 1.02196 1.20990 0.95231 0.88587 0.94907 1.21934 1.02560 1.01529 0.93226 1.21514 0.95236 0.92983 0.99100 1.20707 0.99429 0.94547 0.95998 1.21002 0.92239 0.98894 0.91545 1.62143 0.99299 1.11374 1.52370 1.22224 1.00538 0.90812 0.97516 1.19736 0.95984 0.90121 0.87114 1.21135 0.97231 1.26104 1.09793 0.91847 1.24969 0.98361 0.96196 0.95046 1.69952 1.37300 1.31864 1.14784 0.86514 0.84484 0.78956 0.77550 1.20625 1.21373 1.19883 1.21530 0.96631 0.89062 0.89492 1.98436 1.91301 1.10421 1.97972 1.66837 1.12288 1.09006 1.31160 0.92248 0.91942 0.92520 0.89190 0.92215 0.92149 0.91861 0.84453 0.84331 0.89634 0.94547 0.94079 0.90548 0.97048 0.95041 0.99094 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16 2 C -0.04 -0.43 3.23 -91.77 -0.30 -0.73 16 3 C -0.15 -1.10 8.62 37.16 0.32 -0.78 16 4 C 0.14 1.81 5.79 -82.59 -0.48 1.33 16 5 C -0.17 -1.98 9.18 -39.44 -0.36 -2.34 16 6 C -0.06 -0.80 9.29 -39.29 -0.36 -1.17 16 7 C -0.10 -1.65 4.43 -104.45 -0.46 -2.11 16 8 C 0.09 1.64 4.44 -4.98 -0.02 1.62 16 9 N -0.53 -11.26 4.65 -245.84 -1.14 -12.40 16 10 C 0.04 0.74 9.16 60.06 0.55 1.29 16 11 C 0.20 5.02 4.72 -4.98 -0.02 4.99 16 12 C -0.50 -14.10 8.46 -34.44 -0.29 -14.39 16 13 H 0.06 1.77 7.12 -52.49 -0.37 1.40 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 16 Si 0.90 21.79 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.20 3.34 7.27 -17.45 -0.13 3.21 16 21 Cl -0.01 -0.18 27.72 -51.86 -1.44 -1.62 16 22 N -0.48 -7.63 10.25 -6.62 -0.07 -7.70 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.39 6.49 -51.93 -0.34 0.06 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.14 1.15 6.32 -52.49 -0.33 0.82 16 31 H 0.14 1.49 8.05 -52.48 -0.42 1.07 16 32 H 0.09 1.57 7.39 -51.93 -0.38 1.18 16 33 H 0.04 0.61 7.98 -51.93 -0.41 0.20 16 34 H 0.04 0.72 6.89 -51.93 -0.36 0.36 16 35 H 0.08 1.61 6.76 -51.93 -0.35 1.26 16 36 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 38 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -30.57 334.35 -9.11 -39.68 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -5.90 Total: -5.44 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.31 Total: -8.40 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.47 Total: -46.02 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.44 Total: -1.62 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.57 -9.11 -39.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238725909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.695 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds