Wall clock time and date at job start Tue Mar 31 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21292 * 120.00142 * 2 1 4 4 N 1.34776 * 119.99870 * 179.97438 * 2 1 3 5 5 C 1.39955 * 119.99894 * 185.27617 * 4 2 1 6 6 C 1.38979 * 120.00597 * 33.36409 * 5 4 2 7 7 C 1.38187 * 120.17896 * 180.02562 * 6 5 4 8 8 C 1.38062 * 120.20269 * 359.97438 * 7 6 5 9 9 C 1.39408 * 120.01511 * 0.02740 * 8 7 6 10 10 C 1.48317 * 120.09004 * 179.97438 * 9 8 7 11 11 C 1.39904 * 119.60987 * 4.72707 * 10 9 8 12 12 C 1.38692 * 119.46231 * 179.70235 * 11 10 9 13 13 C 1.38292 * 118.69194 * 0.56039 * 12 11 10 14 14 C 1.40682 * 119.18274 * 359.72381 * 13 12 11 15 15 C 1.41381 * 119.76556 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00035 * 359.97438 * 15 14 13 17 17 C 1.40017 * 120.00032 * 179.97438 * 15 14 13 18 18 N 1.30747 * 119.99970 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00188 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46421 * 60.00365 * 19 17 15 21 21 H 1.48492 * 109.47392 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47170 * 300.00865 * 19 17 15 23 23 N 1.32218 * 119.60607 * 184.99248 * 10 9 8 24 24 C 1.38633 * 120.00897 * 213.63719 * 5 4 2 25 25 H 1.08993 * 109.47321 * 240.00364 * 1 2 3 26 26 H 1.08999 * 109.47065 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46757 * 120.00356 * 1 2 3 28 28 H 0.96996 * 120.00218 * 5.28751 * 4 2 1 29 29 H 1.07998 * 119.90821 * 0.02562 * 6 5 4 30 30 H 1.08004 * 119.89731 * 179.97438 * 7 6 5 31 31 H 1.07997 * 119.99413 * 179.97438 * 8 7 6 32 32 H 1.07997 * 120.26103 * 359.97438 * 11 10 9 33 33 H 1.07998 * 120.65499 * 180.28113 * 12 11 10 34 34 H 1.07996 * 120.40730 * 179.70655 * 13 12 11 35 35 H 0.97005 * 119.99768 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.09646 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5759 -1.1697 0.1120 6 6 4.2142 -0.1970 0.8722 7 6 5.5915 -0.1958 0.9843 8 6 6.3414 -1.1610 0.3423 9 6 5.7098 -2.1406 -0.4225 10 6 6.5138 -3.1779 -1.1133 11 6 7.8975 -3.2271 -0.9131 12 6 8.6456 -4.2023 -1.5558 13 6 7.9968 -5.0947 -2.3896 14 6 6.6037 -4.9903 -2.5551 15 6 5.9279 -5.8965 -3.4041 16 1 6.4811 -6.6652 -3.9232 17 6 4.5414 -5.7974 -3.5720 18 7 3.8717 -4.8665 -2.9440 19 14 3.6485 -6.9943 -4.6944 20 1 3.8521 -8.3804 -4.2019 21 1 2.1973 -6.6796 -4.6995 22 1 4.1864 -6.8750 -6.0734 23 7 5.9150 -4.0420 -1.9152 24 6 4.3219 -2.1391 -0.5405 25 1 -0.3633 -0.5137 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 1.6990 -2.0055 -0.0765 29 1 3.6321 0.5600 1.3767 30 1 6.0828 0.5625 1.5759 31 1 7.4177 -1.1566 0.4318 32 1 8.3786 -2.5142 -0.2599 33 1 9.7143 -4.2607 -1.4115 34 1 8.5529 -5.8620 -2.9075 35 1 2.9111 -4.7977 -3.0606 36 1 3.8281 -2.8930 -1.1357 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239525806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:47 Heat of formation + Delta-G solvation = 20.041164 kcal Electronic energy + Delta-G solvation = -20846.540700 eV Core-core repulsion = 17681.218365 eV Total energy + Delta-G solvation = -3165.322334 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.19686 -38.65140 -37.48073 -34.60611 -33.66249 -31.70063 -30.79670 -30.31987 -28.94278 -28.11249 -25.63521 -23.22947 -22.32845 -21.16309 -20.92262 -19.57327 -17.78952 -16.99058 -16.68979 -15.87175 -15.46975 -15.17001 -14.57242 -14.41852 -14.21667 -13.60783 -13.51674 -13.11597 -12.87126 -12.67855 -12.65813 -12.37128 -12.10251 -11.88197 -11.26171 -11.17964 -11.13221 -10.87134 -10.74718 -10.45449 -10.14021 -9.94998 -9.70703 -9.45280 -8.76229 -8.10284 -7.78476 -7.68005 -7.21962 -6.49239 -4.58571 1.54632 1.83950 2.65439 2.81309 3.02627 3.05639 3.06673 3.17899 3.27800 3.88720 4.35166 4.72908 4.79839 5.12167 5.22901 5.30513 5.41526 5.64102 5.73354 5.80789 5.87792 5.91198 6.12541 6.15142 6.39779 6.46286 6.66230 6.74913 6.76632 6.82337 6.94693 7.08104 7.22695 7.31412 7.51217 7.55631 7.62614 7.68381 7.97069 8.15809 8.23191 8.59773 8.85035 9.98572 10.23274 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.005807 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.253299 B = 4820.269989 C = 6745.529882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.533 6.533 4 N -0.669 5.669 5 C 0.124 3.876 6 C -0.127 4.127 7 C -0.116 4.116 8 C -0.123 4.123 9 C -0.002 4.002 10 C 0.174 3.826 11 C -0.297 4.297 12 C -0.060 4.060 13 C -0.271 4.271 14 C 0.257 3.743 15 C -0.432 4.432 16 H 0.083 0.917 17 C 0.072 3.928 18 N -0.720 5.720 19 Si 0.908 3.092 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.265 1.265 23 N -0.467 5.467 24 C -0.101 4.101 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.411 0.589 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.271 0.729 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.037 4.491 5.548 9.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.295 3.705 3 O -0.410 6.410 4 N -0.314 5.314 5 C 0.031 3.969 6 C -0.148 4.148 7 C -0.135 4.135 8 C -0.142 4.142 9 C -0.003 4.003 10 C 0.030 3.970 11 C -0.320 4.320 12 C -0.084 4.084 13 C -0.294 4.294 14 C 0.131 3.869 15 C -0.463 4.463 16 H 0.101 0.899 17 C -0.153 4.153 18 N -0.342 5.342 19 Si 0.732 3.268 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.190 1.190 23 N -0.180 5.180 24 C -0.122 4.122 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.247 0.753 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.803 5.343 5.422 10.209 hybrid contribution 0.370 -1.037 -0.474 1.198 sum -6.433 4.307 4.948 9.187 Atomic orbital electron populations 1.21915 0.91247 1.05566 1.04491 1.20919 0.90702 0.83352 0.75502 1.90726 1.70642 1.31311 1.48293 1.43556 1.05692 1.09652 1.72459 1.17717 0.82289 0.98331 0.98582 1.20990 0.94787 0.99347 0.99639 1.20786 0.93263 0.98826 1.00600 1.21256 0.99989 0.94866 0.98123 1.18606 0.92224 0.93894 0.95615 1.19714 0.89646 0.93459 0.94176 1.21226 0.94630 1.05303 1.10877 1.20800 0.97585 0.94513 0.95542 1.21805 0.96348 1.04077 1.07144 1.18508 0.88143 0.89982 0.90241 1.19556 0.92197 1.12246 1.22319 0.89851 1.26017 0.98110 0.95565 0.95576 1.70078 1.07940 1.25560 1.30627 0.86381 0.78285 0.81114 0.80994 1.18968 1.20256 1.18970 1.68707 1.36593 1.04180 1.08518 1.21466 0.93666 0.99282 0.97792 0.89229 0.88886 0.89151 0.75312 0.85744 0.86279 0.85867 0.88288 0.88407 0.88234 0.91792 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.32 36.01 0.37 -1.07 16 2 C 0.51 6.99 7.68 -10.99 -0.08 6.91 16 3 O -0.53 -9.54 14.77 5.55 0.08 -9.45 16 4 N -0.67 -9.52 5.34 -9.89 -0.05 -9.57 16 5 C 0.12 2.21 6.27 -83.73 -0.53 1.68 16 6 C -0.13 -2.21 8.65 -39.33 -0.34 -2.55 16 7 C -0.12 -1.92 10.03 -39.66 -0.40 -2.31 16 8 C -0.12 -2.24 9.41 -39.21 -0.37 -2.61 16 9 C 0.00 -0.04 5.87 -104.92 -0.62 -0.66 16 10 C 0.17 4.23 6.73 -82.93 -0.56 3.67 16 11 C -0.30 -6.67 9.47 -38.79 -0.37 -7.04 16 12 C -0.06 -1.34 10.15 -39.39 -0.40 -1.74 16 13 C -0.27 -6.56 9.83 -38.64 -0.38 -6.94 16 14 C 0.26 6.88 6.55 -85.01 -0.56 6.33 16 15 C -0.43 -11.21 9.14 -37.72 -0.34 -11.56 16 16 H 0.08 2.03 7.85 -52.49 -0.41 1.61 16 17 C 0.07 1.76 5.50 -17.35 -0.10 1.66 16 18 N -0.72 -17.90 11.15 55.55 0.62 -17.28 16 19 Si 0.91 17.92 29.56 -169.99 -5.02 12.90 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 N -0.47 -12.45 6.92 -7.67 -0.05 -12.51 16 24 C -0.10 -2.07 9.48 -39.04 -0.37 -2.45 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.41 4.68 8.82 -40.82 -0.36 4.32 16 29 H 0.12 2.11 6.41 -52.49 -0.34 1.77 16 30 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.12 2.04 6.19 -52.49 -0.32 1.72 16 32 H 0.10 1.94 6.20 -52.49 -0.33 1.61 16 33 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 34 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.27 6.06 8.29 -40.82 -0.34 5.72 16 36 H 0.16 3.47 7.23 -52.49 -0.38 3.09 16 LS Contribution 313.69 15.07 4.73 4.73 Total: -1.00 -30.95 313.69 -8.54 -39.50 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -3.81 Total: 10.37 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -5.03 Total: -18.68 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.51 Total: -39.36 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.02 Total: 12.90 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.95 -8.54 -39.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239525806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.536 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds