Wall clock time and date at job start Tue Mar 31 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21292 * 120.00142 * 2 1 4 4 N 1.34776 * 119.99870 * 179.97438 * 2 1 3 5 5 C 1.39955 * 119.99894 * 185.27617 * 4 2 1 6 6 C 1.38979 * 120.00597 * 33.36409 * 5 4 2 7 7 C 1.38187 * 120.17896 * 180.02562 * 6 5 4 8 8 C 1.38062 * 120.20269 * 359.97438 * 7 6 5 9 9 C 1.39408 * 120.01511 * 0.02740 * 8 7 6 10 10 C 1.48317 * 120.09004 * 179.97438 * 9 8 7 11 11 C 1.39904 * 119.60987 * 4.72707 * 10 9 8 12 12 C 1.38692 * 119.46231 * 179.70235 * 11 10 9 13 13 C 1.38292 * 118.69194 * 0.56039 * 12 11 10 14 14 C 1.40682 * 119.18274 * 359.72381 * 13 12 11 15 15 C 1.41381 * 119.76556 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00035 * 359.97438 * 15 14 13 17 17 C 1.40017 * 120.00032 * 179.97438 * 15 14 13 18 18 N 1.30747 * 119.99970 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00188 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46421 * 60.00365 * 19 17 15 21 21 H 1.48492 * 109.47392 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47170 * 300.00865 * 19 17 15 23 23 N 1.32218 * 119.60607 * 184.99248 * 10 9 8 24 24 C 1.38633 * 120.00897 * 213.63719 * 5 4 2 25 25 H 1.08993 * 109.47321 * 240.00364 * 1 2 3 26 26 H 1.08999 * 109.47065 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46757 * 120.00356 * 1 2 3 28 28 H 0.96996 * 120.00218 * 5.28751 * 4 2 1 29 29 H 1.07998 * 119.90821 * 0.02562 * 6 5 4 30 30 H 1.08004 * 119.89731 * 179.97438 * 7 6 5 31 31 H 1.07997 * 119.99413 * 179.97438 * 8 7 6 32 32 H 1.07997 * 120.26103 * 359.97438 * 11 10 9 33 33 H 1.07998 * 120.65499 * 180.28113 * 12 11 10 34 34 H 1.07996 * 120.40730 * 179.70655 * 13 12 11 35 35 H 0.97005 * 119.99768 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.09646 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5759 -1.1697 0.1120 6 6 4.2142 -0.1970 0.8722 7 6 5.5915 -0.1958 0.9843 8 6 6.3414 -1.1610 0.3423 9 6 5.7098 -2.1406 -0.4225 10 6 6.5138 -3.1779 -1.1133 11 6 7.8975 -3.2271 -0.9131 12 6 8.6456 -4.2023 -1.5558 13 6 7.9968 -5.0947 -2.3896 14 6 6.6037 -4.9903 -2.5551 15 6 5.9279 -5.8965 -3.4041 16 1 6.4811 -6.6652 -3.9232 17 6 4.5414 -5.7974 -3.5720 18 7 3.8717 -4.8665 -2.9440 19 14 3.6485 -6.9943 -4.6944 20 1 3.8521 -8.3804 -4.2019 21 1 2.1973 -6.6796 -4.6995 22 1 4.1864 -6.8750 -6.0734 23 7 5.9150 -4.0420 -1.9152 24 6 4.3219 -2.1391 -0.5405 25 1 -0.3633 -0.5137 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 1.6990 -2.0055 -0.0765 29 1 3.6321 0.5600 1.3767 30 1 6.0828 0.5625 1.5759 31 1 7.4177 -1.1566 0.4318 32 1 8.3786 -2.5142 -0.2599 33 1 9.7143 -4.2607 -1.4115 34 1 8.5529 -5.8620 -2.9075 35 1 2.9111 -4.7977 -3.0606 36 1 3.8281 -2.8930 -1.1357 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239525806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:47 Heat of formation + Delta-G solvation = 1.734368 kcal Electronic energy + Delta-G solvation = -20847.334542 eV Core-core repulsion = 17681.218365 eV Total energy + Delta-G solvation = -3166.116177 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.45589 -40.27483 -39.00236 -35.96331 -35.39466 -33.31302 -32.37014 -31.64789 -30.49397 -29.38295 -27.43232 -24.78869 -23.86647 -22.58599 -22.57044 -20.96922 -19.45519 -18.43061 -17.95565 -17.29875 -16.99878 -16.53179 -16.28051 -15.94791 -15.69758 -15.06400 -14.92691 -14.51181 -14.47466 -14.23466 -13.75695 -13.64445 -13.38171 -13.04126 -12.85174 -12.79448 -12.73054 -12.49863 -12.40136 -12.02935 -11.71976 -11.43557 -11.19946 -10.93277 -10.39662 -9.90514 -9.51874 -9.22645 -8.86107 -8.29008 -6.50224 0.00442 0.42289 1.05196 1.27952 1.40991 1.51712 1.54485 1.65831 2.16641 2.23222 2.76352 3.08186 3.71271 3.80371 3.99194 4.06941 4.25371 4.36982 4.38821 4.50983 4.63280 4.64980 4.71347 4.76448 4.87443 4.93666 5.07063 5.09903 5.18482 5.39451 5.44983 5.48990 5.59593 5.63845 5.80650 5.89689 6.11047 6.20554 6.28283 6.47813 6.74598 6.96205 7.12887 8.14347 8.45475 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.005807 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.253299 B = 4820.269989 C = 6745.529882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.503 3.497 3 O -0.578 6.578 4 N -0.665 5.665 5 C 0.125 3.875 6 C -0.130 4.130 7 C -0.104 4.104 8 C -0.122 4.122 9 C -0.032 4.032 10 C 0.152 3.848 11 C -0.299 4.299 12 C -0.058 4.058 13 C -0.295 4.295 14 C 0.221 3.779 15 C -0.469 4.469 16 H 0.087 0.913 17 C 0.028 3.972 18 N -0.748 5.748 19 Si 0.985 3.015 20 H -0.261 1.261 21 H -0.266 1.266 22 H -0.263 1.263 23 N -0.496 5.496 24 C -0.121 4.121 25 H 0.118 0.882 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.423 0.577 29 H 0.132 0.868 30 H 0.158 0.842 31 H 0.142 0.858 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.278 0.722 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.764 5.257 6.370 10.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.294 3.706 3 O -0.457 6.457 4 N -0.311 5.311 5 C 0.031 3.969 6 C -0.150 4.150 7 C -0.122 4.122 8 C -0.142 4.142 9 C -0.034 4.034 10 C 0.009 3.991 11 C -0.322 4.322 12 C -0.082 4.082 13 C -0.318 4.318 14 C 0.095 3.905 15 C -0.501 4.501 16 H 0.105 0.895 17 C -0.194 4.194 18 N -0.370 5.370 19 Si 0.805 3.195 20 H -0.185 1.185 21 H -0.190 1.190 22 H -0.188 1.188 23 N -0.209 5.209 24 C -0.142 4.142 25 H 0.136 0.864 26 H 0.117 0.883 27 H 0.128 0.872 28 H 0.261 0.739 29 H 0.150 0.850 30 H 0.175 0.825 31 H 0.160 0.840 32 H 0.148 0.852 33 H 0.154 0.846 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.540 6.101 6.258 11.543 hybrid contribution 0.620 -1.159 -0.632 1.458 sum -6.920 4.942 5.626 10.196 Atomic orbital electron populations 1.21948 0.86546 1.06727 1.06759 1.21953 0.92779 0.82167 0.73736 1.90699 1.71983 1.32688 1.50324 1.43663 1.04447 1.10853 1.72129 1.17789 0.83982 0.97419 0.97679 1.21231 0.95499 0.99026 0.99270 1.21187 0.92897 0.98596 0.99557 1.21423 1.00995 0.94255 0.97481 1.18744 0.92613 0.94733 0.97263 1.20341 0.91147 0.93691 0.93935 1.21627 0.94151 1.05674 1.10743 1.21230 0.99490 0.93365 0.94132 1.22009 0.95840 1.05427 1.08497 1.19014 0.89633 0.90729 0.91076 1.19905 0.93608 1.13052 1.23503 0.89522 1.26888 0.98307 0.97308 0.96930 1.70176 1.08536 1.26787 1.31506 0.85232 0.77248 0.78512 0.78496 1.18502 1.18998 1.18800 1.68688 1.37599 1.05014 1.09643 1.21297 0.93877 1.00049 0.98958 0.86392 0.88313 0.87170 0.73870 0.85007 0.82467 0.84036 0.85152 0.84565 0.87202 0.91088 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 10.32 71.24 0.74 -1.51 16 2 C 0.50 13.18 7.68 87.66 0.67 13.85 16 3 O -0.58 -20.15 14.77 -3.07 -0.05 -20.19 16 4 N -0.67 -18.52 5.34 -303.58 -1.62 -20.14 16 5 C 0.13 4.46 6.27 38.12 0.24 4.70 16 6 C -0.13 -4.33 8.65 22.44 0.19 -4.14 16 7 C -0.10 -3.19 10.03 22.22 0.22 -2.97 16 8 C -0.12 -4.29 9.41 22.51 0.21 -4.08 16 9 C -0.03 -1.39 5.87 -20.06 -0.12 -1.51 16 10 C 0.15 7.56 6.73 42.17 0.28 7.85 16 11 C -0.30 -13.25 9.47 22.78 0.22 -13.04 16 12 C -0.06 -2.55 10.15 22.39 0.23 -2.32 16 13 C -0.30 -14.62 9.83 22.88 0.22 -14.39 16 14 C 0.22 12.36 6.55 40.26 0.26 12.62 16 15 C -0.47 -25.40 9.14 23.48 0.21 -25.18 16 16 H 0.09 4.39 7.85 -2.91 -0.02 4.37 16 17 C 0.03 1.39 5.50 85.29 0.47 1.86 16 18 N -0.75 -38.63 11.15 21.84 0.24 -38.38 16 19 Si 0.98 37.35 29.56 68.60 2.03 39.38 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 23 N -0.50 -27.61 6.92 -178.19 -1.23 -28.84 16 24 C -0.12 -5.10 9.48 22.62 0.21 -4.89 16 25 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.10 1.33 8.12 -2.39 -0.02 1.31 16 27 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.42 9.43 8.82 -92.71 -0.82 8.61 16 29 H 0.13 4.24 6.41 -2.91 -0.02 4.23 16 30 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 31 H 0.14 4.33 6.19 -2.91 -0.02 4.31 16 32 H 0.13 4.81 6.20 -2.91 -0.02 4.79 16 33 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 34 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 35 H 0.28 12.85 8.29 -92.70 -0.77 12.08 16 36 H 0.13 6.20 7.23 -2.91 -0.02 6.18 16 Total: -1.00 -70.70 313.69 3.95 -66.75 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: 0.31 Total: 34.58 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 4.27 Total: -33.15 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -2.61 Total: -87.37 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.05 Total: -20.19 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -70.70 3.95 -66.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239525806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.483 kcal (2) G-P(sol) polarization free energy of solvation -70.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds