Wall clock time and date at job start Tue Mar 31 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99607 * 2 1 4 4 N 1.34780 * 120.00042 * 179.97438 * 2 1 3 5 5 C 1.39935 * 119.99686 * 184.39836 * 4 2 1 6 6 C 1.39039 * 119.99669 * 211.34661 * 5 4 2 7 7 C 1.38242 * 120.22231 * 180.02562 * 6 5 4 8 8 C 1.38009 * 120.21860 * 0.02562 * 7 6 5 9 9 C 1.39617 * 119.99548 * 359.97438 * 8 7 6 10 10 C 1.47978 * 120.11186 * 179.97438 * 9 8 7 11 11 C 1.39888 * 119.44867 * 4.97822 * 10 9 8 12 12 C 1.36612 * 119.46871 * 179.71472 * 11 10 9 13 13 C 1.41302 * 118.40773 * 0.54623 * 12 11 10 14 14 C 1.41050 * 120.55182 * 179.75321 * 13 12 11 15 15 H 1.08001 * 120.00153 * 22.00588 * 14 13 12 16 16 C 1.40023 * 120.00188 * 202.00856 * 14 13 12 17 17 N 1.30789 * 119.99885 * 35.11725 * 16 14 13 18 18 Si 1.86802 * 120.00324 * 215.12261 * 16 14 13 19 19 H 1.48496 * 109.47216 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.47044 * 299.99884 * 18 16 14 21 21 H 1.48503 * 109.47118 * 59.99583 * 18 16 14 22 22 C 1.40949 * 118.89124 * 359.47815 * 13 12 11 23 23 N 1.31261 * 120.40558 * 0.24960 * 22 13 12 24 24 C 1.38566 * 120.00139 * 31.60324 * 5 4 2 25 25 H 1.08999 * 109.47069 * 239.99971 * 1 2 3 26 26 H 1.08995 * 109.47706 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46913 * 120.00270 * 1 2 3 28 28 H 0.96997 * 119.99784 * 4.40125 * 4 2 1 29 29 H 1.07997 * 119.88874 * 359.97311 * 6 5 4 30 30 H 1.08000 * 119.89433 * 179.97438 * 7 6 5 31 31 H 1.07996 * 119.99763 * 179.97438 * 8 7 6 32 32 H 1.08003 * 120.26252 * 0.02562 * 11 10 9 33 33 H 1.07999 * 120.79170 * 180.29663 * 12 11 10 34 34 H 0.96996 * 120.00251 * 1.44696 * 17 16 14 35 35 H 1.08004 * 119.79617 * 180.23214 * 22 13 12 36 36 H 1.07999 * 120.11039 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5772 -1.1689 0.0935 6 6 4.3137 -2.1736 -0.5239 7 6 5.6933 -2.1801 -0.4347 8 6 6.3485 -1.1896 0.2683 9 6 5.6179 -0.1763 0.8918 10 6 6.3177 0.8868 1.6467 11 6 7.7160 0.9267 1.6423 12 6 8.3625 1.9114 2.3342 13 6 7.5862 2.8544 3.0446 14 6 8.2068 3.8868 3.7785 15 1 9.2144 4.1910 3.5364 16 6 7.5166 4.5172 4.8210 17 7 6.6935 3.8301 5.5700 18 14 7.7712 6.3398 5.1420 19 1 6.9311 6.7621 6.2914 20 1 9.2009 6.5925 5.4540 21 1 7.3836 7.1138 3.9353 22 6 6.1812 2.7498 3.0028 23 7 5.6067 1.7882 2.3185 24 6 4.2254 -0.1722 0.8052 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 1.6980 -2.0060 -0.0636 29 1 3.8064 -2.9521 -1.0743 30 1 6.2601 -2.9633 -0.9159 31 1 7.4263 -1.1983 0.3361 32 1 8.2799 0.1880 1.0920 33 1 9.4411 1.9652 2.3415 34 1 6.5771 2.8794 5.4167 35 1 5.5736 3.4650 3.5374 36 1 3.6547 0.6065 1.2893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239527774.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:50 Heat of formation + Delta-G solvation = 2.617937 kcal Electronic energy + Delta-G solvation = -20586.797302 eV Core-core repulsion = 17420.719439 eV Total energy + Delta-G solvation = -3166.077862 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23246 -38.77847 -37.66245 -34.85352 -34.22985 -31.45077 -31.16351 -30.60173 -28.93343 -28.04614 -25.43362 -23.06786 -22.53303 -21.53315 -20.53141 -20.03906 -18.23115 -17.46209 -16.76269 -15.90419 -15.42916 -15.06082 -14.94108 -14.48856 -14.08583 -13.81284 -13.69916 -13.18907 -12.94044 -12.74345 -12.60599 -12.46700 -12.20257 -11.83026 -11.74306 -11.38731 -11.24176 -11.11212 -10.69499 -10.53649 -10.17747 -10.13588 -9.61008 -9.24920 -8.75197 -8.54230 -8.04507 -7.82112 -7.61367 -7.36818 -4.63558 1.49190 1.83503 2.60059 2.79215 2.84521 3.03797 3.17700 3.20248 3.27477 3.80656 4.17789 4.54447 4.71674 5.08790 5.20545 5.27051 5.29408 5.49974 5.55832 5.63094 5.73212 5.90155 6.02824 6.09882 6.30536 6.35319 6.56275 6.65274 6.73892 6.84064 6.88812 6.98756 7.18782 7.37568 7.42092 7.51983 7.56603 7.62090 7.76403 7.96635 8.24058 8.39029 8.50072 9.54381 9.65174 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020056 B = 0.004263 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.740486 B = 6566.226323 C = 7738.878190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.500 3.500 3 O -0.512 6.512 4 N -0.675 5.675 5 C 0.139 3.861 6 C -0.180 4.180 7 C -0.098 4.098 8 C -0.154 4.154 9 C 0.041 3.959 10 C -0.032 4.032 11 C -0.094 4.094 12 C -0.211 4.211 13 C 0.050 3.950 14 C -0.487 4.487 15 H 0.086 0.914 16 C 0.039 3.961 17 N -0.755 5.755 18 Si 1.067 2.933 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.269 1.269 22 C -0.013 4.013 23 N -0.431 5.431 24 C -0.116 4.116 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.406 0.594 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.303 0.697 35 H 0.135 0.865 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.221 -8.871 -7.084 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.288 3.712 3 O -0.385 6.385 4 N -0.320 5.320 5 C 0.046 3.954 6 C -0.200 4.200 7 C -0.116 4.116 8 C -0.173 4.173 9 C 0.040 3.960 10 C -0.164 4.164 11 C -0.114 4.114 12 C -0.235 4.235 13 C 0.045 3.955 14 C -0.514 4.514 15 H 0.104 0.896 16 C -0.188 4.188 17 N -0.375 5.375 18 Si 0.888 3.112 19 H -0.194 1.194 20 H -0.197 1.197 21 H -0.194 1.194 22 C -0.181 4.181 23 N -0.138 5.138 24 C -0.137 4.137 25 H 0.108 0.892 26 H 0.113 0.887 27 H 0.105 0.895 28 H 0.241 0.759 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.152 0.848 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.258 -6.985 -6.095 12.416 hybrid contribution 1.229 -1.814 -1.048 2.429 sum -7.030 -8.799 -7.144 13.337 Atomic orbital electron populations 1.21913 0.91188 1.05818 1.04139 1.20985 0.90744 0.83481 0.76023 1.90837 1.70303 1.31060 1.46340 1.43543 1.05486 1.09428 1.73594 1.17684 0.82049 0.97551 0.98125 1.20615 0.94232 1.00762 1.04433 1.20654 0.93463 0.98355 0.99157 1.21142 0.99731 0.95472 1.00963 1.18553 0.92027 0.92230 0.93227 1.18677 0.89461 1.00104 1.08110 1.21204 0.94491 0.97818 0.97931 1.20885 0.98240 0.97853 1.06533 1.18628 0.93290 0.91402 0.92155 1.20699 1.02763 1.13850 1.14060 0.89582 1.27346 0.91741 1.07763 0.91978 1.70507 1.25095 1.12607 1.29247 0.83605 0.77766 0.71813 0.77969 1.19425 1.19735 1.19392 1.22557 0.91992 0.99018 1.04550 1.66973 1.41125 1.01501 1.04157 1.21308 0.94230 0.99298 0.98868 0.89237 0.88690 0.89477 0.75930 0.86806 0.86399 0.86250 0.87853 0.87797 0.88366 0.84810 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.32 36.01 0.37 -1.08 16 2 C 0.50 7.18 7.70 -10.98 -0.08 7.09 16 3 O -0.51 -10.36 14.62 5.55 0.08 -10.28 16 4 N -0.67 -8.79 5.35 -9.89 -0.05 -8.85 16 5 C 0.14 2.35 6.31 -83.74 -0.53 1.82 16 6 C -0.18 -2.62 9.95 -39.28 -0.39 -3.01 16 7 C -0.10 -1.47 10.02 -39.66 -0.40 -1.86 16 8 C -0.15 -2.76 9.41 -39.15 -0.37 -3.13 16 9 C 0.04 0.90 5.87 -104.91 -0.62 0.28 16 10 C -0.03 -0.80 6.73 -82.75 -0.56 -1.36 16 11 C -0.09 -2.19 9.37 -39.55 -0.37 -2.56 16 12 C -0.21 -5.14 9.88 -39.00 -0.39 -5.52 16 13 C 0.05 1.32 5.33 -106.64 -0.57 0.76 16 14 C -0.49 -12.28 8.91 -37.85 -0.34 -12.62 16 15 H 0.09 2.08 8.04 -52.49 -0.42 1.66 16 16 C 0.04 0.93 4.70 -17.33 -0.08 0.85 16 17 N -0.76 -19.02 12.49 55.55 0.69 -18.33 16 18 Si 1.07 20.17 30.05 -169.99 -5.11 15.06 16 19 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 20 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 21 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 22 C -0.01 -0.34 9.38 -16.77 -0.16 -0.50 16 23 N -0.43 -11.54 9.40 -9.10 -0.09 -11.63 16 24 C -0.12 -2.46 8.19 -38.98 -0.32 -2.78 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.41 3.43 8.81 -40.82 -0.36 3.07 16 29 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.96 6.17 -52.49 -0.32 1.64 16 32 H 0.10 2.03 6.18 -52.48 -0.32 1.71 16 33 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 34 H 0.30 7.95 7.18 -40.82 -0.29 7.66 16 35 H 0.13 3.63 6.65 -52.48 -0.35 3.28 16 36 H 0.14 3.46 5.72 -52.49 -0.30 3.15 16 LS Contribution 312.62 15.07 4.71 4.71 Total: -1.00 -31.84 312.62 -8.25 -40.09 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -3.70 Total: 12.86 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -4.79 Total: -23.63 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.56 Total: -38.80 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.11 Total: 15.06 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.84 -8.25 -40.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239527774.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.708 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds