Wall clock time and date at job start Tue Mar 31 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21284 * 119.99607 * 2 1 4 4 N 1.34780 * 120.00042 * 179.97438 * 2 1 3 5 5 C 1.39935 * 119.99686 * 184.39836 * 4 2 1 6 6 C 1.39039 * 119.99669 * 211.34661 * 5 4 2 7 7 C 1.38242 * 120.22231 * 180.02562 * 6 5 4 8 8 C 1.38009 * 120.21860 * 0.02562 * 7 6 5 9 9 C 1.39617 * 119.99548 * 359.97438 * 8 7 6 10 10 C 1.47978 * 120.11186 * 179.97438 * 9 8 7 11 11 C 1.39888 * 119.44867 * 4.97822 * 10 9 8 12 12 C 1.36612 * 119.46871 * 179.71472 * 11 10 9 13 13 C 1.41302 * 118.40773 * 0.54623 * 12 11 10 14 14 C 1.41050 * 120.55182 * 179.75321 * 13 12 11 15 15 H 1.08001 * 120.00153 * 22.00588 * 14 13 12 16 16 C 1.40023 * 120.00188 * 202.00856 * 14 13 12 17 17 N 1.30789 * 119.99885 * 35.11725 * 16 14 13 18 18 Si 1.86802 * 120.00324 * 215.12261 * 16 14 13 19 19 H 1.48496 * 109.47216 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.47044 * 299.99884 * 18 16 14 21 21 H 1.48503 * 109.47118 * 59.99583 * 18 16 14 22 22 C 1.40949 * 118.89124 * 359.47815 * 13 12 11 23 23 N 1.31261 * 120.40558 * 0.24960 * 22 13 12 24 24 C 1.38566 * 120.00139 * 31.60324 * 5 4 2 25 25 H 1.08999 * 109.47069 * 239.99971 * 1 2 3 26 26 H 1.08995 * 109.47706 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46913 * 120.00270 * 1 2 3 28 28 H 0.96997 * 119.99784 * 4.40125 * 4 2 1 29 29 H 1.07997 * 119.88874 * 359.97311 * 6 5 4 30 30 H 1.08000 * 119.89433 * 179.97438 * 7 6 5 31 31 H 1.07996 * 119.99763 * 179.97438 * 8 7 6 32 32 H 1.08003 * 120.26252 * 0.02562 * 11 10 9 33 33 H 1.07999 * 120.79170 * 180.29663 * 12 11 10 34 34 H 0.96996 * 120.00251 * 1.44696 * 17 16 14 35 35 H 1.08004 * 119.79617 * 180.23214 * 22 13 12 36 36 H 1.07999 * 120.11039 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5772 -1.1689 0.0935 6 6 4.3137 -2.1736 -0.5239 7 6 5.6933 -2.1801 -0.4347 8 6 6.3485 -1.1896 0.2683 9 6 5.6179 -0.1763 0.8918 10 6 6.3177 0.8868 1.6467 11 6 7.7160 0.9267 1.6423 12 6 8.3625 1.9114 2.3342 13 6 7.5862 2.8544 3.0446 14 6 8.2068 3.8868 3.7785 15 1 9.2144 4.1910 3.5364 16 6 7.5166 4.5172 4.8210 17 7 6.6935 3.8301 5.5700 18 14 7.7712 6.3398 5.1420 19 1 6.9311 6.7621 6.2914 20 1 9.2009 6.5925 5.4540 21 1 7.3836 7.1138 3.9353 22 6 6.1812 2.7498 3.0028 23 7 5.6067 1.7882 2.3185 24 6 4.2254 -0.1722 0.8052 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 1.6980 -2.0060 -0.0636 29 1 3.8064 -2.9521 -1.0743 30 1 6.2601 -2.9633 -0.9159 31 1 7.4263 -1.1983 0.3361 32 1 8.2799 0.1880 1.0920 33 1 9.4411 1.9652 2.3415 34 1 6.5771 2.8794 5.4167 35 1 5.5736 3.4650 3.5374 36 1 3.6547 0.6065 1.2893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239527774.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:50 Heat of formation + Delta-G solvation = -18.350087 kcal Electronic energy + Delta-G solvation = -20587.706543 eV Core-core repulsion = 17420.719439 eV Total energy + Delta-G solvation = -3166.987104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49953 -40.53699 -39.13277 -36.50162 -35.71420 -33.25287 -32.79617 -31.76390 -30.53432 -29.26398 -27.25095 -24.64698 -24.16849 -23.14295 -22.14159 -21.30498 -20.09620 -18.83565 -17.92681 -17.28295 -17.07712 -16.57574 -16.41111 -16.19459 -15.61985 -15.24502 -15.01633 -14.74197 -14.51458 -14.22212 -14.03602 -13.65776 -13.53770 -13.41447 -13.13689 -12.99866 -12.86328 -12.51505 -12.17331 -12.05016 -11.83631 -11.49829 -11.04473 -10.87987 -10.54204 -10.31938 -9.98477 -9.53079 -9.27755 -8.96323 -6.58980 -0.00669 0.44583 0.80738 1.02883 1.46879 1.57629 1.68368 1.79409 2.15240 2.21276 2.50297 2.97484 3.56990 3.68571 3.78677 4.00653 4.18718 4.31800 4.35912 4.40054 4.45329 4.55938 4.62491 4.72358 4.77117 4.83958 5.01719 5.04357 5.11323 5.35726 5.42496 5.45185 5.47316 5.50839 5.67215 5.76831 5.93692 6.03247 6.18304 6.45955 6.49093 6.60570 7.20178 7.58743 7.71026 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020056 B = 0.004263 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.740486 B = 6566.226323 C = 7738.878190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.491 3.509 3 O -0.582 6.582 4 N -0.659 5.659 5 C 0.133 3.867 6 C -0.153 4.153 7 C -0.087 4.087 8 C -0.152 4.152 9 C -0.004 4.004 10 C -0.036 4.036 11 C -0.097 4.097 12 C -0.217 4.217 13 C 0.027 3.973 14 C -0.516 4.516 15 H 0.093 0.907 16 C 0.008 3.992 17 N -0.776 5.776 18 Si 1.119 2.881 19 H -0.268 1.268 20 H -0.246 1.246 21 H -0.265 1.265 22 C -0.044 4.044 23 N -0.460 5.460 24 C -0.145 4.145 25 H 0.116 0.884 26 H 0.086 0.914 27 H 0.125 0.875 28 H 0.431 0.569 29 H 0.165 0.835 30 H 0.167 0.833 31 H 0.135 0.865 32 H 0.144 0.856 33 H 0.125 0.875 34 H 0.284 0.716 35 H 0.115 0.885 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 -11.955 -9.445 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.281 3.719 3 O -0.461 6.461 4 N -0.306 5.306 5 C 0.038 3.962 6 C -0.174 4.174 7 C -0.105 4.105 8 C -0.171 4.171 9 C -0.006 4.006 10 C -0.170 4.170 11 C -0.117 4.117 12 C -0.241 4.241 13 C 0.022 3.978 14 C -0.542 4.542 15 H 0.111 0.889 16 C -0.213 4.213 17 N -0.395 5.395 18 Si 0.933 3.067 19 H -0.192 1.192 20 H -0.169 1.169 21 H -0.189 1.189 22 C -0.210 4.210 23 N -0.167 5.167 24 C -0.166 4.166 25 H 0.134 0.866 26 H 0.105 0.895 27 H 0.144 0.856 28 H 0.271 0.729 29 H 0.183 0.817 30 H 0.184 0.816 31 H 0.153 0.847 32 H 0.162 0.838 33 H 0.143 0.857 34 H 0.096 0.904 35 H 0.132 0.868 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.474 -10.115 -8.442 15.665 hybrid contribution 1.145 -1.189 -0.545 1.739 sum -7.329 -11.304 -8.988 16.195 Atomic orbital electron populations 1.21937 0.86226 1.06363 1.07156 1.22146 0.93065 0.82616 0.74045 1.90827 1.72109 1.33630 1.49555 1.43489 1.04189 1.10520 1.72439 1.17853 0.84007 0.96943 0.97366 1.21207 0.94294 0.99967 1.01895 1.21221 0.93995 0.97962 0.97365 1.21390 1.00517 0.94882 1.00332 1.18665 0.92622 0.93494 0.95772 1.19467 0.90748 0.99884 1.06889 1.21569 0.94133 0.98243 0.97715 1.21238 0.99288 0.97559 1.06042 1.18886 0.93136 0.92544 0.93238 1.20899 1.03473 1.14826 1.14995 0.88870 1.28804 0.90333 1.11203 0.90979 1.70619 1.26788 1.11560 1.30577 0.83010 0.79172 0.66561 0.77917 1.19237 1.16905 1.18939 1.22354 0.92544 0.99865 1.06187 1.66970 1.42298 1.02363 1.05108 1.21134 0.94322 1.00263 1.00891 0.86602 0.89529 0.85629 0.72869 0.81710 0.81557 0.84719 0.83829 0.85690 0.90426 0.86771 0.88062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 10.32 71.24 0.74 -1.57 16 2 C 0.49 13.85 7.70 87.66 0.68 14.53 16 3 O -0.58 -24.96 14.62 -3.04 -0.04 -25.00 16 4 N -0.66 -15.67 5.35 -303.60 -1.62 -17.29 16 5 C 0.13 4.23 6.31 38.12 0.24 4.47 16 6 C -0.15 -3.68 9.95 22.46 0.22 -3.45 16 7 C -0.09 -2.16 10.02 22.22 0.22 -1.94 16 8 C -0.15 -5.06 9.41 22.55 0.21 -4.84 16 9 C 0.00 -0.18 5.87 -20.05 -0.12 -0.30 16 10 C -0.04 -1.87 6.73 41.95 0.28 -1.59 16 11 C -0.10 -4.54 9.37 22.29 0.21 -4.33 16 12 C -0.22 -10.81 9.88 22.64 0.22 -10.59 16 13 C 0.03 1.49 5.33 -21.17 -0.11 1.38 16 14 C -0.52 -27.22 8.91 23.39 0.21 -27.01 16 15 H 0.09 4.63 8.04 -2.91 -0.02 4.61 16 16 C 0.01 0.41 4.70 85.28 0.40 0.81 16 17 N -0.78 -41.68 12.49 21.84 0.27 -41.41 16 18 Si 1.12 41.51 30.05 68.60 2.06 43.57 16 19 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 20 H -0.25 -8.03 7.11 99.48 0.71 -7.33 16 21 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 22 C -0.04 -2.59 9.38 85.44 0.80 -1.79 16 23 N -0.46 -26.64 9.40 -182.70 -1.72 -28.36 16 24 C -0.14 -6.34 8.19 22.66 0.19 -6.15 16 25 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.09 1.46 8.12 -2.39 -0.02 1.44 16 27 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.43 5.48 8.81 -92.71 -0.82 4.66 16 29 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 31 H 0.14 3.96 6.17 -2.91 -0.02 3.95 16 32 H 0.14 5.38 6.18 -2.91 -0.02 5.36 16 33 H 0.13 5.56 8.06 -2.91 -0.02 5.53 16 34 H 0.28 16.21 7.18 -92.71 -0.67 15.54 16 35 H 0.11 6.89 6.65 -2.91 -0.02 6.87 16 36 H 0.10 5.29 5.72 -2.91 -0.02 5.27 16 Total: -1.00 -79.71 312.62 3.75 -75.96 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.41 Total: 34.90 kcal Atomic # 6 Polarization: -46.76 SS G_CDS: 4.39 Total: -42.37 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -3.07 Total: -87.06 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.04 Total: -25.00 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.06 Total: 43.57 kcal Total: -79.71 3.75 -75.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239527774.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.608 kcal (2) G-P(sol) polarization free energy of solvation -79.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds