Wall clock time and date at job start Tue Mar 31 2020 05:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 120.00509 * 2 1 4 4 N 1.34779 * 119.99818 * 179.97438 * 2 1 3 5 5 C 1.39942 * 120.00144 * 184.60209 * 4 2 1 6 6 C 1.38963 * 120.01350 * 324.88761 * 5 4 2 7 7 C 1.38173 * 120.17779 * 179.97438 * 6 5 4 8 8 C 1.38090 * 120.19394 * 359.78341 * 7 6 5 9 9 C 1.39357 * 120.01745 * 0.46875 * 8 7 6 10 10 C 1.48391 * 120.08569 * 179.78989 * 9 8 7 11 11 C 1.40040 * 120.82081 * 179.72254 * 10 9 8 12 12 C 1.38504 * 119.42364 * 180.02562 * 11 10 9 13 13 N 1.31475 * 121.14459 * 359.97124 * 12 11 10 14 14 C 1.33647 * 121.79596 * 0.02908 * 13 12 11 15 15 C 1.41426 * 119.77744 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99717 * 185.03415 * 15 14 13 17 17 C 1.40035 * 120.00235 * 5.04413 * 15 14 13 18 18 N 1.30739 * 119.99624 * 184.95038 * 17 15 14 19 19 Si 1.86795 * 119.99916 * 4.94839 * 17 15 14 20 20 H 1.48498 * 109.46899 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47178 * 300.00093 * 19 17 15 22 22 H 1.48497 * 109.47458 * 59.99991 * 19 17 15 23 23 C 1.39304 * 120.82283 * 0.02562 * 10 9 8 24 24 C 1.38651 * 120.00714 * 144.90120 * 5 4 2 25 25 H 1.08998 * 109.47525 * 240.00574 * 1 2 3 26 26 H 1.08997 * 109.46999 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47106 * 120.00527 * 1 2 3 28 28 H 0.97000 * 119.99822 * 4.61336 * 4 2 1 29 29 H 1.07999 * 119.90986 * 0.02562 * 6 5 4 30 30 H 1.07999 * 119.90519 * 180.02562 * 7 6 5 31 31 H 1.07994 * 119.98893 * 180.25543 * 8 7 6 32 32 H 1.07996 * 120.28652 * 359.97438 * 11 10 9 33 33 H 1.08003 * 119.42507 * 179.97438 * 12 11 10 34 34 H 0.96992 * 120.00383 * 354.99314 * 18 17 15 35 35 H 1.08004 * 120.57893 * 359.97438 * 23 10 9 36 36 H 1.07993 * 120.09617 * 359.96139 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5769 -1.1692 0.0978 6 6 4.3171 -0.1592 -0.5048 7 6 5.6956 -0.1576 -0.4105 8 6 6.3452 -1.1569 0.2867 9 6 5.6113 -2.1767 0.8897 10 6 6.3081 -3.2539 1.6353 11 6 5.5855 -4.2828 2.2520 12 6 6.2654 -5.2735 2.9410 13 7 7.5774 -5.2648 3.0256 14 6 8.3135 -4.3061 2.4554 15 6 9.7224 -4.3384 2.5739 16 1 10.3158 -3.5239 2.1852 17 6 10.3482 -5.4263 3.1949 18 7 11.6407 -5.4122 3.3912 19 14 9.3362 -6.8977 3.7429 20 1 10.2283 -7.9066 4.3685 21 1 8.3179 -6.4580 4.7302 22 1 8.6579 -7.4979 2.5661 23 6 7.6968 -3.2633 1.7445 24 6 4.2220 -2.1792 0.7951 25 1 -0.3634 -0.5137 0.8900 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 1.6981 -2.0059 -0.0667 29 1 3.8134 0.6270 -1.0475 30 1 6.2665 0.6298 -0.8801 31 1 7.4225 -1.1501 0.3618 32 1 4.5074 -4.3033 2.1915 33 1 5.7081 -6.0668 3.4169 34 1 12.1762 -4.6825 3.0427 35 1 8.2892 -2.4849 1.2867 36 1 3.6486 -2.9648 1.2645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239530743.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:22 Heat of formation + Delta-G solvation = 3.194692 kcal Electronic energy + Delta-G solvation = -20391.602805 eV Core-core repulsion = 17225.549953 eV Total energy + Delta-G solvation = -3166.052852 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57645 -39.08333 -37.96030 -35.00002 -33.90762 -32.58207 -31.07343 -30.44669 -29.39133 -28.28490 -25.60842 -23.68468 -22.64848 -21.72912 -20.79801 -20.00123 -18.44079 -17.56249 -16.92705 -16.40161 -15.78598 -15.25544 -15.15676 -14.56556 -14.10815 -14.04235 -13.70377 -13.54332 -13.19450 -12.95359 -12.76370 -12.61411 -12.35934 -12.28533 -12.20273 -11.61851 -11.27983 -10.81535 -10.57524 -10.37972 -10.09796 -9.98418 -9.65848 -9.42373 -9.30777 -8.27933 -8.04979 -7.73485 -7.71105 -7.28274 -4.84685 1.18218 1.40175 2.34585 2.49485 2.74266 2.91048 3.60131 3.64966 4.00937 4.06448 4.43101 4.43920 4.63636 4.86044 4.96499 5.02404 5.03750 5.33765 5.38598 5.48464 5.49589 5.58635 5.64096 5.68024 5.98675 6.19369 6.28221 6.38401 6.38587 6.44976 6.63747 6.76136 6.91420 7.07113 7.20623 7.21401 7.34786 7.41244 7.61203 7.89491 8.01136 8.22002 8.56985 9.41539 9.95459 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.036827 B = 0.003569 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.128012 B = 7842.594410 C = 8519.251626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.528 6.528 4 N -0.673 5.673 5 C 0.133 3.867 6 C -0.128 4.128 7 C -0.105 4.105 8 C -0.121 4.121 9 C -0.009 4.009 10 C 0.013 3.987 11 C -0.306 4.306 12 C 0.153 3.847 13 N -0.574 5.574 14 C 0.249 3.751 15 C -0.470 4.470 16 H 0.082 0.918 17 C 0.042 3.958 18 N -0.801 5.801 19 Si 1.155 2.845 20 H -0.333 1.333 21 H -0.277 1.277 22 H -0.293 1.293 23 C -0.239 4.239 24 C -0.133 4.133 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.410 0.590 29 H 0.134 0.866 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.283 0.717 35 H 0.109 0.891 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.251 6.145 -6.970 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.296 3.704 3 O -0.404 6.404 4 N -0.318 5.318 5 C 0.040 3.960 6 C -0.148 4.148 7 C -0.123 4.123 8 C -0.140 4.140 9 C -0.009 4.009 10 C 0.008 3.992 11 C -0.329 4.329 12 C -0.008 4.008 13 N -0.293 5.293 14 C 0.126 3.874 15 C -0.502 4.502 16 H 0.100 0.900 17 C -0.179 4.179 18 N -0.423 5.423 19 Si 0.990 3.010 20 H -0.266 1.266 21 H -0.205 1.205 22 H -0.221 1.221 23 C -0.261 4.261 24 C -0.153 4.153 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.246 0.754 29 H 0.152 0.848 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.123 0.877 33 H 0.147 0.853 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.208 4.963 -5.770 18.816 hybrid contribution -0.696 1.943 -1.365 2.474 sum -17.904 6.906 -7.135 20.473 Atomic orbital electron populations 1.21923 0.90864 1.05880 1.04540 1.20986 0.90826 0.83231 0.75336 1.90731 1.70492 1.31344 1.47842 1.43545 1.05423 1.09786 1.73069 1.17612 0.82113 0.97525 0.98764 1.21192 0.93774 0.99241 1.00606 1.20966 0.93867 0.98400 0.99085 1.21365 1.00519 0.94085 0.97984 1.18760 0.91979 0.94203 0.95978 1.18651 0.93099 0.92605 0.94859 1.21143 0.98532 1.00840 1.12349 1.22032 0.90451 0.95273 0.93053 1.66553 1.06965 1.28638 1.27190 1.18595 0.93803 0.87410 0.87589 1.20814 0.90596 1.06171 1.32600 0.90019 1.27873 0.96332 1.02874 0.90829 1.70652 1.06867 1.33429 1.31306 0.81817 0.70873 0.70405 0.77893 1.26644 1.20464 1.22144 1.21752 0.92913 1.02866 1.08590 1.20973 0.94343 0.99695 1.00274 0.89043 0.88655 0.89145 0.75416 0.84835 0.85802 0.85413 0.87683 0.85342 0.90559 0.87292 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.32 36.00 0.37 -0.57 16 2 C 0.51 5.36 7.78 -10.99 -0.09 5.28 16 3 O -0.53 -7.92 14.52 5.56 0.08 -7.84 16 4 N -0.67 -6.84 5.33 -9.89 -0.05 -6.90 16 5 C 0.13 1.85 6.29 -83.73 -0.53 1.32 16 6 C -0.13 -1.88 8.69 -39.34 -0.34 -2.22 16 7 C -0.10 -1.52 10.03 -39.66 -0.40 -1.92 16 8 C -0.12 -1.98 9.44 -39.22 -0.37 -2.35 16 9 C -0.01 -0.15 5.87 -104.92 -0.62 -0.77 16 10 C 0.01 0.28 5.91 -104.64 -0.62 -0.34 16 11 C -0.31 -6.06 9.51 -38.81 -0.37 -6.42 16 12 C 0.15 3.27 11.17 -17.61 -0.20 3.07 16 13 N -0.57 -14.39 4.50 -11.21 -0.05 -14.44 16 14 C 0.25 6.41 6.40 -85.02 -0.54 5.87 16 15 C -0.47 -12.71 9.57 -37.70 -0.36 -13.07 16 16 H 0.08 2.19 8.05 -52.49 -0.42 1.77 16 17 C 0.04 1.15 5.52 -17.34 -0.10 1.05 16 18 N -0.80 -21.74 13.65 55.55 0.76 -20.98 16 19 Si 1.16 28.21 25.62 -169.99 -4.36 23.85 16 20 H -0.33 -8.04 7.11 56.52 0.40 -7.64 16 21 H -0.28 -6.72 6.60 56.52 0.37 -6.34 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 C -0.24 -5.51 9.22 -38.34 -0.35 -5.86 16 24 C -0.13 -2.00 9.36 -39.05 -0.37 -2.36 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.54 8.12 -51.93 -0.42 0.11 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.41 2.70 8.82 -40.82 -0.36 2.34 16 29 H 0.13 1.96 6.22 -52.49 -0.33 1.63 16 30 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.13 2.05 6.28 -52.49 -0.33 1.72 16 32 H 0.11 1.73 6.32 -52.49 -0.33 1.40 16 33 H 0.13 2.31 8.06 -52.48 -0.42 1.89 16 34 H 0.28 7.33 8.72 -40.82 -0.36 6.98 16 35 H 0.11 2.35 6.33 -52.48 -0.33 2.01 16 36 H 0.13 1.71 6.28 -52.49 -0.33 1.38 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -32.01 307.07 -7.59 -39.59 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -3.73 Total: 1.38 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -4.87 Total: -19.29 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.66 Total: -42.32 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.08 Total: -7.84 kcal Atomic # 14 Polarization: 28.21 SS G_CDS: -4.36 Total: 23.85 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.01 -7.59 -39.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239530743.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.788 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds