Wall clock time and date at job start Tue Mar 31 2020 05:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 119.99815 * 2 1 4 4 N 1.34771 * 119.99901 * 180.02562 * 2 1 3 5 5 C 1.39937 * 119.99936 * 184.53218 * 4 2 1 6 6 C 1.39054 * 119.99461 * 144.90340 * 5 4 2 7 7 C 1.38255 * 120.23101 * 180.27665 * 6 5 4 8 8 C 1.37984 * 120.22996 * 359.45012 * 7 6 5 9 9 C 1.39698 * 119.98171 * 0.27446 * 8 7 6 10 10 C 1.47857 * 120.11218 * 179.97438 * 9 8 7 11 11 C 1.39309 * 120.77527 * 129.71901 * 10 9 8 12 12 N 1.31675 * 120.65761 * 179.74959 * 11 10 9 13 13 C 1.32204 * 122.50342 * 0.54762 * 12 11 10 14 14 C 1.36485 * 121.50917 * 359.72417 * 13 12 11 15 15 C 1.41120 * 119.10385 * 359.97438 * 14 13 12 16 16 C 1.40936 * 121.10759 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99854 * 153.25244 * 16 15 14 18 18 C 1.40175 * 120.00164 * 333.25272 * 16 15 14 19 19 N 1.30692 * 119.99646 * 347.93276 * 18 16 15 20 20 Si 1.86795 * 120.00369 * 167.93059 * 18 16 15 21 21 H 1.48504 * 109.46868 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47229 * 120.00110 * 20 18 16 23 23 H 1.48496 * 109.47105 * 239.99951 * 20 18 16 24 24 C 1.38543 * 119.99412 * 324.63215 * 5 4 2 25 25 H 1.09004 * 109.47220 * 239.99578 * 1 2 3 26 26 H 1.09003 * 109.47136 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46940 * 119.99749 * 1 2 3 28 28 H 0.97004 * 120.00037 * 4.53360 * 4 2 1 29 29 H 1.07994 * 119.88596 * 0.02562 * 6 5 4 30 30 H 1.08004 * 119.88813 * 179.72236 * 7 6 5 31 31 H 1.08000 * 120.01347 * 180.24723 * 8 7 6 32 32 H 1.07995 * 119.66917 * 0.02605 * 11 10 9 33 33 H 1.08000 * 119.24454 * 179.74010 * 13 12 11 34 34 H 1.07996 * 120.45006 * 180.02562 * 14 13 12 35 35 H 0.97001 * 119.99948 * 180.02562 * 19 18 16 36 36 H 1.07997 * 120.11529 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5769 -1.1691 0.0952 6 6 4.2244 -2.1823 0.7937 7 6 5.6032 -2.1859 0.8962 8 6 6.3470 -1.1903 0.2966 9 6 5.7064 -0.1711 -0.4122 10 6 6.5006 0.8975 -1.0553 11 6 6.2923 1.2348 -2.3908 12 7 6.9975 2.1901 -2.9599 13 6 7.9330 2.8640 -2.3131 14 6 8.2197 2.6083 -1.0034 15 6 7.4988 1.6012 -0.3269 16 6 7.7597 1.3025 1.0255 17 1 6.9813 0.8834 1.6458 18 6 9.0295 1.5495 1.5655 19 7 10.0322 1.8300 0.7755 20 14 9.2885 1.4777 3.4140 21 1 8.0046 1.1434 4.0811 22 1 10.2982 0.4363 3.7323 23 1 9.7685 2.7969 3.8982 24 6 4.3141 -0.1647 -0.5106 25 1 -0.3634 -0.5139 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8901 28 1 1.6981 -2.0059 -0.0673 29 1 3.6481 -2.9669 1.2611 30 1 6.1001 -2.9731 1.4438 31 1 7.4240 -1.1988 0.3756 32 1 5.5418 0.7106 -2.9638 33 1 8.4828 3.6347 -2.8328 34 1 8.9873 3.1696 -0.4914 35 1 10.9110 2.0006 1.1491 36 1 3.8133 0.6204 -1.0575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239530781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:27 Heat of formation + Delta-G solvation = 9.569119 kcal Electronic energy + Delta-G solvation = -21126.111234 eV Core-core repulsion = 17960.334798 eV Total energy + Delta-G solvation = -3165.776436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.17931 -38.64620 -37.50383 -34.60834 -34.13592 -31.86717 -30.71458 -30.21872 -28.52022 -27.87281 -25.98596 -22.96446 -22.31203 -21.43714 -20.31057 -20.03438 -17.66834 -17.12983 -16.68261 -15.66628 -15.54869 -15.26872 -14.61001 -14.40256 -14.22852 -13.88262 -13.54495 -13.01985 -12.76138 -12.68661 -12.45930 -12.34853 -12.23926 -11.94055 -11.45325 -11.32037 -11.17848 -11.04240 -10.79520 -10.28404 -10.07840 -9.75868 -9.56188 -9.50558 -8.53064 -7.98636 -7.84351 -7.71226 -7.30043 -6.85862 -4.61952 1.75171 1.97403 2.68550 2.75414 2.91116 3.00614 3.07283 3.22496 3.23203 3.82626 4.46420 4.62089 4.73473 5.09149 5.19389 5.41838 5.50278 5.62712 5.64868 5.78884 5.94839 6.02767 6.13371 6.18389 6.33371 6.65820 6.75870 6.82376 6.89568 6.92840 7.08830 7.10929 7.35275 7.41127 7.53649 7.56770 7.66555 7.87454 8.07827 8.26471 8.42700 8.67648 8.71769 9.61500 10.00595 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015504 B = 0.005873 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.596503 B = 4766.433981 C = 5683.970961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.501 3.499 3 O -0.518 6.518 4 N -0.674 5.674 5 C 0.128 3.872 6 C -0.168 4.168 7 C -0.110 4.110 8 C -0.109 4.109 9 C 0.039 3.961 10 C -0.231 4.231 11 C 0.130 3.870 12 N -0.577 5.577 13 C 0.080 3.920 14 C -0.205 4.205 15 C 0.146 3.854 16 C -0.439 4.439 17 H 0.087 0.913 18 C 0.076 3.924 19 N -0.784 5.784 20 Si 0.910 3.090 21 H -0.257 1.257 22 H -0.272 1.272 23 H -0.270 1.270 24 C -0.125 4.125 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.405 0.595 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.284 0.716 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.445 -7.977 2.353 14.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.289 3.711 3 O -0.392 6.392 4 N -0.320 5.320 5 C 0.035 3.965 6 C -0.189 4.189 7 C -0.129 4.129 8 C -0.128 4.128 9 C 0.037 3.963 10 C -0.237 4.237 11 C -0.028 4.028 12 N -0.291 5.291 13 C -0.067 4.067 14 C -0.228 4.228 15 C 0.138 3.862 16 C -0.470 4.470 17 H 0.105 0.895 18 C -0.144 4.144 19 N -0.408 5.408 20 Si 0.734 3.266 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.195 1.195 24 C -0.145 4.145 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.240 0.760 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.146 0.854 35 H 0.095 0.905 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.940 -6.873 1.472 13.003 hybrid contribution 0.174 -0.699 1.793 1.933 sum -10.766 -7.572 3.265 13.561 Atomic orbital electron populations 1.21912 0.91321 1.05709 1.04129 1.20951 0.90659 0.83527 0.75996 1.90807 1.70284 1.31185 1.46954 1.43495 1.05602 1.09350 1.73505 1.17582 0.81671 0.97831 0.99371 1.20659 0.94993 1.00223 1.02999 1.20780 0.92990 0.98922 1.00165 1.21448 1.00730 0.93252 0.97373 1.18610 0.91212 0.92688 0.93774 1.19544 1.06486 1.02501 0.95130 1.22059 0.96054 0.93360 0.91372 1.67306 1.10818 1.11189 1.39771 1.21735 0.94676 0.97628 0.92703 1.21955 1.04576 1.00747 0.95474 1.17746 0.87695 0.87936 0.92784 1.19650 0.96745 1.35510 0.95067 0.89530 1.26020 0.95561 0.92109 1.00681 1.69741 1.01322 1.32488 1.37298 0.86206 0.79634 0.78896 0.81875 1.18087 1.19678 1.19519 1.21381 0.93130 0.99111 1.00911 0.89402 0.88789 0.89382 0.75983 0.86971 0.86511 0.85291 0.86247 0.86407 0.85408 0.90518 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.32 36.01 0.37 -1.00 16 2 C 0.50 6.92 7.78 -10.99 -0.09 6.84 16 3 O -0.52 -10.10 14.54 5.56 0.08 -10.02 16 4 N -0.67 -8.57 5.33 -9.90 -0.05 -8.63 16 5 C 0.13 2.15 6.29 -83.74 -0.53 1.63 16 6 C -0.17 -2.58 9.96 -39.27 -0.39 -2.97 16 7 C -0.11 -1.84 10.02 -39.67 -0.40 -2.23 16 8 C -0.11 -2.22 8.10 -39.13 -0.32 -2.53 16 9 C 0.04 0.85 5.00 -104.92 -0.52 0.33 16 10 C -0.23 -5.74 5.54 -104.04 -0.58 -6.32 16 11 C 0.13 3.16 10.71 -17.22 -0.18 2.97 16 12 N -0.58 -14.51 10.32 -13.37 -0.14 -14.65 16 13 C 0.08 1.98 11.09 -18.02 -0.20 1.78 16 14 C -0.21 -5.34 8.71 -39.12 -0.34 -5.68 16 15 C 0.15 3.86 5.59 -106.26 -0.59 3.27 16 16 C -0.44 -11.25 7.26 -37.83 -0.27 -11.52 16 17 H 0.09 2.22 6.76 -52.49 -0.35 1.87 16 18 C 0.08 1.83 5.27 -17.31 -0.09 1.74 16 19 N -0.78 -19.31 10.84 55.56 0.60 -18.70 16 20 Si 0.91 18.19 29.58 -169.99 -5.03 13.16 16 21 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 C -0.13 -2.56 8.19 -38.97 -0.32 -2.88 16 25 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.41 3.37 8.82 -40.82 -0.36 3.01 16 29 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 31 H 0.13 2.75 7.36 -52.49 -0.39 2.37 16 32 H 0.12 2.61 8.05 -52.49 -0.42 2.19 16 33 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 34 H 0.13 3.34 6.23 -52.49 -0.33 3.02 16 35 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 36 H 0.13 2.89 6.24 -52.49 -0.33 2.56 16 LS Contribution 312.10 15.07 4.70 4.70 Total: -1.00 -31.42 312.10 -8.13 -39.55 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -3.85 Total: 11.16 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -4.45 Total: -16.57 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.41 Total: -41.98 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.42 -8.13 -39.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239530781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.116 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds