Wall clock time and date at job start Tue Mar 31 2020 05:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 119.99815 * 2 1 4 4 N 1.34771 * 119.99901 * 180.02562 * 2 1 3 5 5 C 1.39937 * 119.99936 * 184.53218 * 4 2 1 6 6 C 1.39054 * 119.99461 * 144.90340 * 5 4 2 7 7 C 1.38255 * 120.23101 * 180.27665 * 6 5 4 8 8 C 1.37984 * 120.22996 * 359.45012 * 7 6 5 9 9 C 1.39698 * 119.98171 * 0.27446 * 8 7 6 10 10 C 1.47857 * 120.11218 * 179.97438 * 9 8 7 11 11 C 1.39309 * 120.77527 * 129.71901 * 10 9 8 12 12 N 1.31675 * 120.65761 * 179.74959 * 11 10 9 13 13 C 1.32204 * 122.50342 * 0.54762 * 12 11 10 14 14 C 1.36485 * 121.50917 * 359.72417 * 13 12 11 15 15 C 1.41120 * 119.10385 * 359.97438 * 14 13 12 16 16 C 1.40936 * 121.10759 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99854 * 153.25244 * 16 15 14 18 18 C 1.40175 * 120.00164 * 333.25272 * 16 15 14 19 19 N 1.30692 * 119.99646 * 347.93276 * 18 16 15 20 20 Si 1.86795 * 120.00369 * 167.93059 * 18 16 15 21 21 H 1.48504 * 109.46868 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47229 * 120.00110 * 20 18 16 23 23 H 1.48496 * 109.47105 * 239.99951 * 20 18 16 24 24 C 1.38543 * 119.99412 * 324.63215 * 5 4 2 25 25 H 1.09004 * 109.47220 * 239.99578 * 1 2 3 26 26 H 1.09003 * 109.47136 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46940 * 119.99749 * 1 2 3 28 28 H 0.97004 * 120.00037 * 4.53360 * 4 2 1 29 29 H 1.07994 * 119.88596 * 0.02562 * 6 5 4 30 30 H 1.08004 * 119.88813 * 179.72236 * 7 6 5 31 31 H 1.08000 * 120.01347 * 180.24723 * 8 7 6 32 32 H 1.07995 * 119.66917 * 0.02605 * 11 10 9 33 33 H 1.08000 * 119.24454 * 179.74010 * 13 12 11 34 34 H 1.07996 * 120.45006 * 180.02562 * 14 13 12 35 35 H 0.97001 * 119.99948 * 180.02562 * 19 18 16 36 36 H 1.07997 * 120.11529 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5769 -1.1691 0.0952 6 6 4.2244 -2.1823 0.7937 7 6 5.6032 -2.1859 0.8962 8 6 6.3470 -1.1903 0.2966 9 6 5.7064 -0.1711 -0.4122 10 6 6.5006 0.8975 -1.0553 11 6 6.2923 1.2348 -2.3908 12 7 6.9975 2.1901 -2.9599 13 6 7.9330 2.8640 -2.3131 14 6 8.2197 2.6083 -1.0034 15 6 7.4988 1.6012 -0.3269 16 6 7.7597 1.3025 1.0255 17 1 6.9813 0.8834 1.6458 18 6 9.0295 1.5495 1.5655 19 7 10.0322 1.8300 0.7755 20 14 9.2885 1.4777 3.4140 21 1 8.0046 1.1434 4.0811 22 1 10.2982 0.4363 3.7323 23 1 9.7685 2.7969 3.8982 24 6 4.3141 -0.1647 -0.5106 25 1 -0.3634 -0.5139 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8901 28 1 1.6981 -2.0059 -0.0673 29 1 3.6481 -2.9669 1.2611 30 1 6.1001 -2.9731 1.4438 31 1 7.4240 -1.1988 0.3756 32 1 5.5418 0.7106 -2.9638 33 1 8.4828 3.6347 -2.8328 34 1 8.9873 3.1696 -0.4914 35 1 10.9110 2.0006 1.1491 36 1 3.8133 0.6204 -1.0575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239530781.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:26 Heat of formation + Delta-G solvation = -10.401411 kcal Electronic energy + Delta-G solvation = -21126.977221 eV Core-core repulsion = 17960.334798 eV Total energy + Delta-G solvation = -3166.642423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.43255 -40.37919 -39.01564 -36.15854 -35.77591 -33.50270 -32.19305 -31.68409 -30.08653 -29.13720 -27.89112 -24.58313 -23.79138 -23.22002 -21.88806 -21.30145 -19.54470 -18.46027 -17.85367 -17.41522 -17.01120 -16.52806 -16.33687 -16.13818 -15.77262 -15.32733 -14.87950 -14.44632 -14.38484 -14.12193 -14.09955 -13.67936 -13.36065 -13.23729 -13.04300 -12.97998 -12.81775 -12.52576 -12.36509 -11.96982 -11.71057 -11.34237 -11.28183 -10.81881 -10.19450 -9.93799 -9.75330 -9.23304 -8.93158 -8.67998 -6.56333 0.23232 0.52294 0.93446 1.04257 1.35675 1.50330 1.51115 1.66658 2.15225 2.20373 2.72524 3.00578 3.67355 3.83712 3.93279 4.13782 4.17644 4.38134 4.47592 4.51591 4.59579 4.67541 4.73301 4.76590 4.93859 4.98505 5.09882 5.19036 5.22763 5.36191 5.46310 5.47323 5.56257 5.66948 5.84207 6.01266 6.16334 6.23480 6.48121 6.54346 6.74011 6.78767 7.25509 7.65015 8.20222 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015504 B = 0.005873 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.596503 B = 4766.433981 C = 5683.970961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.493 3.507 3 O -0.585 6.585 4 N -0.657 5.657 5 C 0.131 3.869 6 C -0.147 4.147 7 C -0.101 4.101 8 C -0.127 4.127 9 C 0.006 3.994 10 C -0.237 4.237 11 C 0.115 3.885 12 N -0.589 5.589 13 C 0.075 3.925 14 C -0.227 4.227 15 C 0.115 3.885 16 C -0.456 4.456 17 H 0.078 0.922 18 C 0.040 3.960 19 N -0.809 5.809 20 Si 0.982 3.018 21 H -0.261 1.261 22 H -0.257 1.257 23 H -0.263 1.263 24 C -0.143 4.143 25 H 0.120 0.880 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.431 0.569 29 H 0.164 0.836 30 H 0.153 0.847 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.120 0.880 35 H 0.294 0.706 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.437 -10.593 4.272 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.284 3.716 3 O -0.464 6.464 4 N -0.305 5.305 5 C 0.037 3.963 6 C -0.166 4.166 7 C -0.120 4.120 8 C -0.146 4.146 9 C 0.005 3.995 10 C -0.243 4.243 11 C -0.042 4.042 12 N -0.304 5.304 13 C -0.073 4.073 14 C -0.250 4.250 15 C 0.107 3.893 16 C -0.486 4.486 17 H 0.096 0.904 18 C -0.178 4.178 19 N -0.434 5.434 20 Si 0.802 3.198 21 H -0.185 1.185 22 H -0.181 1.181 23 H -0.187 1.187 24 C -0.163 4.163 25 H 0.139 0.861 26 H 0.106 0.894 27 H 0.138 0.862 28 H 0.271 0.729 29 H 0.181 0.819 30 H 0.171 0.829 31 H 0.125 0.875 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.138 0.862 35 H 0.105 0.895 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.978 -9.547 3.363 16.458 hybrid contribution 0.695 0.024 1.178 1.367 sum -12.283 -9.523 4.540 16.192 Atomic orbital electron populations 1.21933 0.86211 1.06371 1.07123 1.22117 0.92977 0.82538 0.73970 1.90799 1.72023 1.33601 1.49951 1.43447 1.03919 1.10642 1.72483 1.17712 0.83641 0.96830 0.98125 1.21143 0.94624 1.00079 1.00795 1.21163 0.93753 0.98211 0.98847 1.21342 0.99976 0.94551 0.98760 1.18577 0.91908 0.93185 0.95878 1.19938 1.06124 1.02851 0.95344 1.22384 0.96449 0.93589 0.91780 1.67349 1.11254 1.11754 1.40008 1.22092 0.94657 0.98027 0.92564 1.21964 1.05303 1.01462 0.96244 1.18164 0.88758 0.88597 0.93761 1.19702 0.97470 1.36559 0.94893 0.90392 1.26830 0.94600 0.91154 1.05196 1.69773 1.02002 1.32247 1.39378 0.85151 0.79468 0.79437 0.75767 1.18473 1.18144 1.18710 1.21221 0.92651 1.00149 1.02289 0.86150 0.89427 0.86231 0.72907 0.81854 0.82948 0.87543 0.84574 0.83859 0.86179 0.89474 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 10.32 71.24 0.74 -1.23 16 2 C 0.49 12.81 7.78 87.66 0.68 13.49 16 3 O -0.58 -23.32 14.54 -3.03 -0.04 -23.37 16 4 N -0.66 -14.76 5.33 -303.61 -1.62 -16.38 16 5 C 0.13 4.16 6.29 38.12 0.24 4.40 16 6 C -0.15 -3.90 9.96 22.47 0.22 -3.68 16 7 C -0.10 -3.13 10.02 22.21 0.22 -2.91 16 8 C -0.13 -5.24 8.10 22.56 0.18 -5.06 16 9 C 0.01 0.27 5.00 -20.05 -0.10 0.17 16 10 C -0.24 -12.50 5.54 -19.49 -0.11 -12.61 16 11 C 0.11 5.88 10.71 84.97 0.91 6.79 16 12 N -0.59 -30.87 10.32 -196.20 -2.02 -32.90 16 13 C 0.07 3.86 11.09 84.23 0.93 4.79 16 14 C -0.23 -12.47 8.71 22.57 0.20 -12.27 16 15 C 0.12 6.43 5.59 -20.93 -0.12 6.31 16 16 C -0.46 -24.40 7.26 23.40 0.17 -24.23 16 17 H 0.08 4.19 6.76 -2.91 -0.02 4.17 16 18 C 0.04 1.96 5.27 85.33 0.45 2.41 16 19 N -0.81 -40.85 10.84 21.86 0.24 -40.62 16 20 Si 0.98 37.35 29.58 68.60 2.03 39.38 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 22 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 24 C -0.14 -5.99 8.19 22.67 0.19 -5.80 16 25 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.09 1.27 8.12 -2.39 -0.02 1.25 16 27 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.43 5.10 8.82 -92.71 -0.82 4.28 16 29 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 30 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.11 4.77 7.36 -2.91 -0.02 4.75 16 32 H 0.14 6.29 8.05 -2.91 -0.02 6.27 16 33 H 0.14 6.41 8.06 -2.91 -0.02 6.38 16 34 H 0.12 6.63 6.23 -2.91 -0.02 6.61 16 35 H 0.29 13.25 8.29 -92.71 -0.77 12.48 16 36 H 0.11 4.96 6.24 -2.91 -0.02 4.94 16 Total: -1.00 -74.66 312.10 3.69 -70.97 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.30 Total: 32.33 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 4.81 Total: -29.42 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -3.41 Total: -89.90 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.04 Total: -23.37 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -74.66 3.69 -70.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239530781.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.569 kcal (2) G-P(sol) polarization free energy of solvation -74.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds