Wall clock time and date at job start Tue Mar 31 2020 05:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 120.00170 * 2 1 4 4 N 1.34784 * 119.99764 * 180.02562 * 2 1 3 5 5 C 1.39576 * 119.99569 * 185.17300 * 4 2 1 6 6 C 1.39140 * 119.92571 * 33.74975 * 5 4 2 7 7 C 1.37675 * 120.07947 * 180.25537 * 6 5 4 8 8 C 1.39812 * 119.92001 * 359.50058 * 7 6 5 9 9 C 1.47661 * 120.08153 * 180.25363 * 8 7 6 10 10 N 1.32652 * 120.00237 * 136.76985 * 9 8 7 11 11 C 1.31718 * 121.71329 * 179.75269 * 10 9 8 12 12 C 1.38890 * 121.51438 * 0.53553 * 11 10 9 13 13 C 1.36871 * 119.81387 * 359.73598 * 12 11 10 14 14 C 1.41122 * 118.40380 * 0.02562 * 13 12 11 15 15 C 1.40842 * 120.72591 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99954 * 149.95113 * 15 14 13 17 17 C 1.40043 * 119.99841 * 329.95203 * 15 14 13 18 18 N 1.30793 * 120.00058 * 167.60110 * 17 15 14 19 19 Si 1.86806 * 119.99917 * 347.60206 * 17 15 14 20 20 H 1.48495 * 109.47257 * 93.59393 * 19 17 15 21 21 H 1.48505 * 109.46924 * 213.59457 * 19 17 15 22 22 H 1.48506 * 109.46974 * 333.59126 * 19 17 15 23 23 C 1.39813 * 119.84101 * 0.47401 * 8 7 6 24 24 C 1.37677 * 119.91513 * 359.77866 * 23 8 7 25 25 H 1.08996 * 109.46830 * 239.99708 * 1 2 3 26 26 H 1.09004 * 109.46849 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47279 * 119.99643 * 1 2 3 28 28 H 0.96998 * 119.99832 * 5.16017 * 4 2 1 29 29 H 1.07997 * 119.95611 * 359.97438 * 6 5 4 30 30 H 1.07999 * 120.03966 * 179.74770 * 7 6 5 31 31 H 1.07998 * 119.24295 * 180.24840 * 11 10 9 32 32 H 1.08002 * 120.09255 * 179.71668 * 12 11 10 33 33 H 1.08001 * 120.80064 * 179.97438 * 13 12 11 34 34 H 0.96997 * 119.99859 * 180.02562 * 18 17 15 35 35 H 1.08003 * 120.03874 * 179.75034 * 23 8 7 36 36 H 1.08001 * 119.95706 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5724 -1.1698 0.1085 6 6 4.2103 -0.1999 0.8755 7 6 5.5830 -0.1962 0.9810 8 6 6.3354 -1.1748 0.3246 9 6 7.8076 -1.1775 0.4398 10 7 8.4556 -2.3187 0.6333 11 6 9.7681 -2.3607 0.7360 12 6 10.5398 -1.2086 0.6577 13 6 9.9347 0.0038 0.4642 14 6 8.5287 0.0417 0.3499 15 6 7.8556 1.2627 0.1506 16 1 6.9253 1.2833 -0.3976 17 6 8.3926 2.4502 0.6633 18 7 7.9108 3.6044 0.2809 19 14 9.7972 2.3854 1.8932 20 1 11.0913 2.4927 1.1728 21 1 9.6688 3.5131 2.8509 22 1 9.7479 1.0991 2.6336 23 6 5.6910 -2.1481 -0.4449 24 6 4.3183 -2.1425 -0.5500 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5137 -0.8900 28 1 1.6988 -2.0055 -0.0765 29 1 3.6281 0.5536 1.3851 30 1 6.0777 0.5594 1.5732 31 1 10.2551 -3.3124 0.8893 32 1 11.6142 -1.2691 0.7496 33 1 10.5193 0.9098 0.4013 34 1 8.2831 4.4269 0.6357 35 1 6.2694 -2.9032 -0.9565 36 1 3.8198 -2.8938 -1.1445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239753444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:54 Heat of formation + Delta-G solvation = 15.186215 kcal Electronic energy + Delta-G solvation = -21021.905534 eV Core-core repulsion = 17856.372673 eV Total energy + Delta-G solvation = -3165.532861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17308 -38.92825 -37.53133 -34.57627 -34.07213 -31.57378 -31.40792 -30.32282 -29.91211 -27.68099 -25.52322 -23.19991 -22.14039 -21.67458 -20.58973 -19.95536 -17.66038 -17.35695 -16.71481 -16.53647 -15.54833 -15.26508 -14.77237 -14.15407 -14.06606 -13.88556 -13.56834 -13.15643 -12.86975 -12.81471 -12.54856 -12.44491 -12.33772 -12.11078 -11.95530 -11.49770 -11.15390 -11.00525 -10.62752 -10.28449 -10.02344 -9.91505 -9.56175 -9.55885 -8.54889 -8.27012 -8.22504 -8.02687 -7.20203 -7.09568 -4.62080 1.60882 2.12710 2.39427 2.59679 2.86142 2.98174 3.10917 3.18551 3.26417 3.82051 4.39275 4.53224 4.73721 5.09569 5.20015 5.31018 5.40540 5.50732 5.58774 5.66875 5.93010 6.02506 6.07044 6.17106 6.22008 6.23281 6.50843 6.72602 6.76386 6.79994 6.85441 7.01926 7.20310 7.26265 7.43779 7.56018 7.57758 7.70075 7.76149 8.17167 8.26959 8.37310 8.55913 9.34749 9.89428 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.018656 B = 0.005556 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.504839 B = 5038.765251 C = 6319.445734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.501 3.499 3 O -0.520 6.520 4 N -0.672 5.672 5 C 0.118 3.882 6 C -0.123 4.123 7 C -0.070 4.070 8 C 0.005 3.995 9 C 0.035 3.965 10 N -0.443 5.443 11 C -0.041 4.041 12 C -0.122 4.122 13 C -0.207 4.207 14 C 0.060 3.940 15 C -0.418 4.418 16 H 0.105 0.895 17 C 0.080 3.920 18 N -0.788 5.788 19 Si 0.911 3.089 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.242 1.242 23 C -0.090 4.090 24 C -0.153 4.153 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.405 0.595 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.290 0.710 35 H 0.121 0.879 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.442 -7.081 0.911 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.289 3.711 3 O -0.394 6.394 4 N -0.317 5.317 5 C 0.025 3.975 6 C -0.143 4.143 7 C -0.090 4.090 8 C 0.003 3.997 9 C -0.105 4.105 10 N -0.150 5.150 11 C -0.200 4.200 12 C -0.142 4.142 13 C -0.232 4.232 14 C 0.055 3.945 15 C -0.446 4.446 16 H 0.123 0.877 17 C -0.141 4.141 18 N -0.411 5.411 19 Si 0.738 3.262 20 H -0.195 1.195 21 H -0.215 1.215 22 H -0.166 1.166 23 C -0.109 4.109 24 C -0.173 4.173 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.240 0.760 29 H 0.144 0.856 30 H 0.155 0.845 31 H 0.144 0.856 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.139 0.861 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.572 -6.760 0.966 11.759 hybrid contribution 1.023 0.561 0.241 1.191 sum -8.550 -6.200 1.207 10.630 Atomic orbital electron populations 1.21911 0.91370 1.05675 1.04155 1.20945 0.90650 0.83534 0.76019 1.90808 1.70435 1.31126 1.47060 1.43432 1.05755 1.09312 1.73213 1.17697 0.81880 0.98737 0.99183 1.20921 0.94735 0.99120 0.99556 1.21353 0.92261 0.97453 0.97910 1.18407 0.91028 0.94227 0.96004 1.19458 0.91341 0.88880 1.10851 1.67091 1.10115 1.29156 1.08654 1.21669 0.89373 0.96715 1.12211 1.21339 0.99129 0.94190 0.99504 1.21083 0.94705 0.96971 1.10456 1.18449 0.91586 0.94050 0.90399 1.19589 1.08279 0.88827 1.27905 0.87748 1.26265 0.96910 0.94620 0.96353 1.69640 1.37357 0.99069 1.34992 0.86332 0.80173 0.79283 0.80449 1.19470 1.21499 1.16572 1.20991 0.92934 0.98447 0.98551 1.20598 0.94039 1.00638 1.02003 0.89334 0.88816 0.89443 0.75982 0.85615 0.84495 0.85632 0.87824 0.87398 0.89961 0.86054 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.32 36.01 0.37 -0.98 16 2 C 0.50 6.83 7.67 -10.98 -0.08 6.75 16 3 O -0.52 -9.96 14.78 5.56 0.08 -9.88 16 4 N -0.67 -8.59 5.32 -9.82 -0.05 -8.64 16 5 C 0.12 2.02 6.27 -83.66 -0.52 1.49 16 6 C -0.12 -2.45 8.63 -39.45 -0.34 -2.79 16 7 C -0.07 -1.54 7.85 -39.20 -0.31 -1.84 16 8 C 0.00 0.11 5.28 -104.87 -0.55 -0.45 16 9 C 0.04 0.85 6.43 -82.25 -0.53 0.33 16 10 N -0.44 -10.36 10.15 -9.18 -0.09 -10.46 16 11 C -0.04 -0.89 11.16 -17.36 -0.19 -1.08 16 12 C -0.12 -2.59 10.03 -39.84 -0.40 -2.99 16 13 C -0.21 -4.89 7.02 -38.98 -0.27 -5.16 16 14 C 0.06 1.52 5.15 -106.40 -0.55 0.97 16 15 C -0.42 -10.91 7.17 -37.92 -0.27 -11.18 16 16 H 0.10 2.93 6.72 -52.49 -0.35 2.57 16 17 C 0.08 2.02 5.48 -17.32 -0.09 1.92 16 18 N -0.79 -20.36 13.93 55.55 0.77 -19.59 16 19 Si 0.91 20.03 24.40 -169.99 -4.15 15.89 16 20 H -0.27 -5.69 6.71 56.52 0.38 -5.31 16 21 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.24 -5.51 6.58 56.52 0.37 -5.14 16 23 C -0.09 -1.74 9.65 -39.20 -0.38 -2.11 16 24 C -0.15 -2.52 9.94 -39.45 -0.39 -2.91 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.77 8.12 -51.93 -0.42 0.34 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.41 3.44 8.82 -40.82 -0.36 3.08 16 29 H 0.13 2.52 6.43 -52.49 -0.34 2.18 16 30 H 0.14 3.16 6.67 -52.49 -0.35 2.81 16 31 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.11 2.48 4.37 -52.49 -0.23 2.25 16 34 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 35 H 0.12 2.26 8.06 -52.48 -0.42 1.83 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -31.14 304.97 -7.14 -38.28 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -3.77 Total: 9.84 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -4.52 Total: -20.04 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.63 Total: -38.69 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.15 Total: 15.89 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.14 -7.14 -38.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239753444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.464 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds