Wall clock time and date at job start Tue Mar 31 2020 05:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21281 * 120.00170 * 2 1 4 4 N 1.34784 * 119.99764 * 180.02562 * 2 1 3 5 5 C 1.39576 * 119.99569 * 185.17300 * 4 2 1 6 6 C 1.39140 * 119.92571 * 33.74975 * 5 4 2 7 7 C 1.37675 * 120.07947 * 180.25537 * 6 5 4 8 8 C 1.39812 * 119.92001 * 359.50058 * 7 6 5 9 9 C 1.47661 * 120.08153 * 180.25363 * 8 7 6 10 10 N 1.32652 * 120.00237 * 136.76985 * 9 8 7 11 11 C 1.31718 * 121.71329 * 179.75269 * 10 9 8 12 12 C 1.38890 * 121.51438 * 0.53553 * 11 10 9 13 13 C 1.36871 * 119.81387 * 359.73598 * 12 11 10 14 14 C 1.41122 * 118.40380 * 0.02562 * 13 12 11 15 15 C 1.40842 * 120.72591 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99954 * 149.95113 * 15 14 13 17 17 C 1.40043 * 119.99841 * 329.95203 * 15 14 13 18 18 N 1.30793 * 120.00058 * 167.60110 * 17 15 14 19 19 Si 1.86806 * 119.99917 * 347.60206 * 17 15 14 20 20 H 1.48495 * 109.47257 * 93.59393 * 19 17 15 21 21 H 1.48505 * 109.46924 * 213.59457 * 19 17 15 22 22 H 1.48506 * 109.46974 * 333.59126 * 19 17 15 23 23 C 1.39813 * 119.84101 * 0.47401 * 8 7 6 24 24 C 1.37677 * 119.91513 * 359.77866 * 23 8 7 25 25 H 1.08996 * 109.46830 * 239.99708 * 1 2 3 26 26 H 1.09004 * 109.46849 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47279 * 119.99643 * 1 2 3 28 28 H 0.96998 * 119.99832 * 5.16017 * 4 2 1 29 29 H 1.07997 * 119.95611 * 359.97438 * 6 5 4 30 30 H 1.07999 * 120.03966 * 179.74770 * 7 6 5 31 31 H 1.07998 * 119.24295 * 180.24840 * 11 10 9 32 32 H 1.08002 * 120.09255 * 179.71668 * 12 11 10 33 33 H 1.08001 * 120.80064 * 179.97438 * 13 12 11 34 34 H 0.96997 * 119.99859 * 180.02562 * 18 17 15 35 35 H 1.08003 * 120.03874 * 179.75034 * 23 8 7 36 36 H 1.08001 * 119.95706 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5724 -1.1698 0.1085 6 6 4.2103 -0.1999 0.8755 7 6 5.5830 -0.1962 0.9810 8 6 6.3354 -1.1748 0.3246 9 6 7.8076 -1.1775 0.4398 10 7 8.4556 -2.3187 0.6333 11 6 9.7681 -2.3607 0.7360 12 6 10.5398 -1.2086 0.6577 13 6 9.9347 0.0038 0.4642 14 6 8.5287 0.0417 0.3499 15 6 7.8556 1.2627 0.1506 16 1 6.9253 1.2833 -0.3976 17 6 8.3926 2.4502 0.6633 18 7 7.9108 3.6044 0.2809 19 14 9.7972 2.3854 1.8932 20 1 11.0913 2.4927 1.1728 21 1 9.6688 3.5131 2.8509 22 1 9.7479 1.0991 2.6336 23 6 5.6910 -2.1481 -0.4449 24 6 4.3183 -2.1425 -0.5500 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5137 -0.8900 28 1 1.6988 -2.0055 -0.0765 29 1 3.6281 0.5536 1.3851 30 1 6.0777 0.5594 1.5732 31 1 10.2551 -3.3124 0.8893 32 1 11.6142 -1.2691 0.7496 33 1 10.5193 0.9098 0.4013 34 1 8.2831 4.4269 0.6357 35 1 6.2694 -2.9032 -0.9565 36 1 3.8198 -2.8938 -1.1445 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239753444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:53 Heat of formation + Delta-G solvation = -6.074964 kcal Electronic energy + Delta-G solvation = -21022.827488 eV Core-core repulsion = 17856.372673 eV Total energy + Delta-G solvation = -3166.454815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47391 -40.61193 -39.03495 -36.04127 -35.81317 -33.32724 -33.01519 -31.82399 -31.07115 -29.09429 -27.32233 -24.76586 -23.74368 -23.33035 -22.15505 -21.29625 -19.49531 -18.73231 -18.21090 -17.86128 -17.23776 -16.61136 -16.38510 -15.79025 -15.44302 -15.36807 -15.21761 -14.68134 -14.44612 -14.21846 -14.14426 -13.84965 -13.65711 -13.41473 -13.25223 -13.00998 -12.80905 -12.76275 -12.18844 -12.01018 -11.77800 -11.40342 -11.33020 -10.88614 -10.30591 -10.02960 -9.83383 -9.73248 -8.97217 -8.75834 -6.55115 0.02052 0.58498 0.67774 0.87675 1.18649 1.33492 1.41124 1.66499 2.02023 2.19098 2.58546 2.92989 3.50066 3.75820 3.83025 4.07360 4.11870 4.22115 4.38401 4.50510 4.55490 4.57868 4.66805 4.69771 4.71762 4.77458 4.99711 5.08493 5.13679 5.20981 5.38831 5.43246 5.51615 5.59463 5.68759 5.91514 5.92977 6.13758 6.23316 6.51950 6.53848 6.62785 7.23023 7.54213 8.08417 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.018656 B = 0.005556 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.504839 B = 5038.765251 C = 6319.445734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.494 3.506 3 O -0.584 6.584 4 N -0.655 5.655 5 C 0.130 3.870 6 C -0.139 4.139 7 C -0.086 4.086 8 C -0.030 4.030 9 C 0.025 3.975 10 N -0.458 5.458 11 C -0.029 4.029 12 C -0.121 4.121 13 C -0.218 4.218 14 C 0.039 3.961 15 C -0.443 4.443 16 H 0.064 0.936 17 C 0.045 3.955 18 N -0.835 5.835 19 Si 0.965 3.035 20 H -0.249 1.249 21 H -0.277 1.277 22 H -0.255 1.255 23 C -0.091 4.091 24 C -0.136 4.136 25 H 0.119 0.881 26 H 0.088 0.912 27 H 0.121 0.879 28 H 0.431 0.569 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.167 0.833 32 H 0.148 0.852 33 H 0.113 0.887 34 H 0.297 0.703 35 H 0.131 0.869 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.827 -10.207 0.782 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.285 3.715 3 O -0.463 6.463 4 N -0.303 5.303 5 C 0.036 3.964 6 C -0.159 4.159 7 C -0.106 4.106 8 C -0.031 4.031 9 C -0.114 4.114 10 N -0.165 5.165 11 C -0.188 4.188 12 C -0.141 4.141 13 C -0.244 4.244 14 C 0.035 3.965 15 C -0.472 4.472 16 H 0.082 0.918 17 C -0.172 4.172 18 N -0.460 5.460 19 Si 0.788 3.212 20 H -0.174 1.174 21 H -0.204 1.204 22 H -0.179 1.179 23 C -0.110 4.110 24 C -0.156 4.156 25 H 0.137 0.863 26 H 0.107 0.893 27 H 0.139 0.861 28 H 0.271 0.729 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.184 0.816 32 H 0.166 0.834 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.149 0.851 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.009 -9.929 0.824 14.123 hybrid contribution 1.063 1.281 0.257 1.684 sum -8.947 -8.648 1.081 12.490 Atomic orbital electron populations 1.21936 0.86076 1.06463 1.07159 1.22137 0.93008 0.82436 0.73881 1.90803 1.72157 1.33476 1.49905 1.43399 1.03890 1.10757 1.72249 1.17775 0.84200 0.97261 0.97196 1.20892 0.93965 1.00203 1.00882 1.21126 0.93273 0.97329 0.98866 1.18518 0.90563 0.95853 0.98181 1.19801 0.92535 0.88914 1.10116 1.67210 1.11233 1.28625 1.09469 1.22503 0.88924 0.98591 1.08785 1.21788 1.01481 0.92903 0.97924 1.21317 0.94059 0.98489 1.10491 1.18650 0.92761 0.94049 0.91076 1.19339 1.07623 0.90320 1.29964 0.91770 1.26908 0.98908 0.93946 0.97413 1.69675 1.39451 0.99758 1.37089 0.85527 0.78354 0.78758 0.78560 1.17387 1.20376 1.17870 1.21166 0.94397 0.97631 0.97822 1.20989 0.92893 1.00788 1.00958 0.86253 0.89272 0.86091 0.72872 0.86802 0.87579 0.81566 0.83419 0.86964 0.89214 0.85094 0.81723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 10.32 71.24 0.74 -1.21 16 2 C 0.49 12.84 7.67 87.66 0.67 13.52 16 3 O -0.58 -23.13 14.78 -3.03 -0.04 -23.18 16 4 N -0.66 -15.20 5.32 -303.36 -1.61 -16.81 16 5 C 0.13 4.35 6.27 38.34 0.24 4.59 16 6 C -0.14 -5.84 8.63 22.35 0.19 -5.65 16 7 C -0.09 -4.08 7.85 22.52 0.18 -3.91 16 8 C -0.03 -1.38 5.28 -20.03 -0.11 -1.48 16 9 C 0.03 1.26 6.43 42.43 0.27 1.53 16 10 N -0.46 -20.94 10.15 -182.97 -1.86 -22.80 16 11 C -0.03 -1.16 11.16 84.87 0.95 -0.21 16 12 C -0.12 -4.82 10.03 22.11 0.22 -4.60 16 13 C -0.22 -10.18 7.02 22.66 0.16 -10.03 16 14 C 0.04 2.06 5.15 -21.02 -0.11 1.95 16 15 C -0.44 -24.93 7.17 23.35 0.17 -24.76 16 16 H 0.06 4.00 6.72 -2.91 -0.02 3.98 16 17 C 0.04 2.38 5.48 85.29 0.47 2.85 16 18 N -0.83 -46.04 13.93 21.84 0.30 -45.74 16 19 Si 0.96 42.29 24.40 68.60 1.67 43.96 16 20 H -0.25 -10.02 6.71 99.48 0.67 -9.35 16 21 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.25 -11.52 6.58 99.48 0.65 -10.87 16 23 C -0.09 -3.47 9.65 22.52 0.22 -3.25 16 24 C -0.14 -4.19 9.94 22.35 0.22 -3.97 16 25 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 1.26 8.12 -2.38 -0.02 1.24 16 27 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.43 5.46 8.82 -92.71 -0.82 4.64 16 29 H 0.11 4.97 6.43 -2.91 -0.02 4.95 16 30 H 0.11 5.53 6.67 -2.91 -0.02 5.51 16 31 H 0.17 5.25 8.06 -2.91 -0.02 5.22 16 32 H 0.15 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.11 5.07 4.37 -2.91 -0.01 5.06 16 34 H 0.30 14.67 8.30 -92.71 -0.77 13.90 16 35 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 36 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -74.74 304.97 3.16 -71.58 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.22 Total: 27.63 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 4.48 Total: -34.64 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -3.17 Total: -85.35 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.04 Total: -23.18 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.67 Total: 43.96 kcal Total: -74.74 3.16 -71.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239753444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.500 kcal (2) G-P(sol) polarization free energy of solvation -74.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds