Wall clock time and date at job start Tue Mar 31 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21285 * 119.99850 * 2 1 4 4 N 1.34779 * 120.00556 * 179.97438 * 2 1 3 5 5 C 1.39710 * 120.00548 * 185.08182 * 4 2 1 6 6 C 1.39033 * 119.94390 * 33.03655 * 5 4 2 7 7 C 1.37806 * 120.05541 * 180.02562 * 6 5 4 8 8 C 1.39482 * 119.94629 * 0.02562 * 7 6 5 9 9 C 1.48215 * 120.05759 * 180.02562 * 8 7 6 10 10 C 1.39957 * 119.61501 * 165.70228 * 9 8 7 11 11 C 1.38660 * 119.46176 * 180.02562 * 10 9 8 12 12 C 1.38313 * 118.69757 * 0.27215 * 11 10 9 13 13 C 1.40686 * 119.19391 * 359.45960 * 12 11 10 14 14 C 1.41355 * 119.76179 * 180.25443 * 13 12 11 15 15 H 1.08004 * 120.00374 * 340.45431 * 14 13 12 16 16 C 1.40015 * 119.99787 * 160.45755 * 14 13 12 17 17 N 1.30750 * 119.99694 * 166.22675 * 16 14 13 18 18 Si 1.86798 * 119.99970 * 346.22984 * 16 14 13 19 19 H 1.48499 * 109.47266 * 86.89243 * 18 16 14 20 20 H 1.48498 * 109.46765 * 206.88843 * 18 16 14 21 21 H 1.48496 * 109.47163 * 326.88800 * 18 16 14 22 22 N 1.32254 * 119.60915 * 345.72075 * 9 8 7 23 23 C 1.39489 * 119.89043 * 0.27772 * 8 7 6 24 24 C 1.37812 * 119.94308 * 359.46433 * 23 8 7 25 25 H 1.09003 * 109.47081 * 240.00055 * 1 2 3 26 26 H 1.08995 * 109.47093 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47061 * 120.00173 * 1 2 3 28 28 H 0.96998 * 119.99366 * 5.08632 * 4 2 1 29 29 H 1.08004 * 119.96847 * 359.97438 * 6 5 4 30 30 H 1.08004 * 120.02726 * 180.02562 * 7 6 5 31 31 H 1.08002 * 120.26910 * 0.03754 * 10 9 8 32 32 H 1.07999 * 120.65297 * 180.02562 * 11 10 9 33 33 H 1.07995 * 120.40163 * 179.70892 * 12 11 10 34 34 H 0.97006 * 119.99644 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.02807 * 179.72976 * 23 8 7 36 36 H 1.08000 * 119.97744 * 180.25430 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.5740 -1.1695 0.1077 6 6 4.2138 -0.1905 0.8594 7 6 5.5877 -0.1903 0.9663 8 6 6.3366 -1.1730 0.3190 9 6 7.8143 -1.1755 0.4327 10 6 8.5360 -2.3102 0.0449 11 6 9.9183 -2.3093 0.1531 12 6 10.5449 -1.1807 0.6499 13 6 9.7653 -0.0689 1.0178 14 6 10.3935 1.0927 1.5219 15 1 11.3961 1.0352 1.9193 16 6 9.7160 2.3180 1.5059 17 7 10.1713 3.3258 2.2033 18 14 8.1617 2.5125 0.4882 19 1 6.9881 2.0818 1.2897 20 1 7.9998 3.9365 0.0994 21 1 8.2617 1.6741 -0.7333 22 7 8.4356 -0.1054 0.8998 23 6 5.6927 -2.1505 -0.4398 24 6 4.3182 -2.1495 -0.5392 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 1.6988 -2.0056 -0.0736 29 1 3.6336 0.5710 1.3594 30 1 6.0843 0.5702 1.5507 31 1 8.0203 -3.1795 -0.3358 32 1 10.4942 -3.1743 -0.1410 33 1 11.6197 -1.1518 0.7503 34 1 9.7017 4.1746 2.1925 35 1 6.2706 -2.9099 -0.9454 36 1 3.8189 -2.9085 -1.1232 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239753483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:55 Heat of formation + Delta-G solvation = 9.809719 kcal Electronic energy + Delta-G solvation = -20807.741084 eV Core-core repulsion = 17641.975081 eV Total energy + Delta-G solvation = -3165.766003 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.47476 -38.99384 -37.78286 -34.90128 -33.63210 -31.69573 -31.34933 -30.52755 -30.15838 -27.94278 -25.66079 -23.37444 -22.81140 -21.18475 -20.91248 -20.05738 -17.87520 -17.59171 -16.98468 -16.28841 -15.63385 -15.12671 -14.75850 -14.56183 -14.28432 -13.96253 -13.53633 -13.24488 -13.11242 -13.07394 -12.74078 -12.63531 -12.55887 -12.19762 -11.65133 -11.47859 -11.07557 -10.82944 -10.61060 -10.36523 -10.28373 -10.02868 -9.87903 -9.22559 -8.71391 -8.62603 -8.30026 -7.87745 -7.29393 -6.91247 -4.68181 1.19716 1.72951 2.34804 2.59718 2.78585 2.98484 3.44824 3.48585 3.59780 4.11947 4.32316 4.50816 4.61763 4.91308 5.02359 5.04030 5.19593 5.22603 5.46409 5.56955 5.68472 5.75085 5.77757 5.92345 6.18335 6.27665 6.38680 6.47853 6.53096 6.54574 6.70183 6.95581 7.02102 7.16696 7.24100 7.31446 7.35335 7.48419 7.81807 7.99411 8.13804 8.52226 8.60967 9.52282 10.02924 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019406 B = 0.005276 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.522162 B = 5306.034525 C = 6591.489112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.504 3.496 3 O -0.521 6.521 4 N -0.673 5.673 5 C 0.133 3.867 6 C -0.126 4.126 7 C -0.076 4.076 8 C -0.039 4.039 9 C 0.198 3.802 10 C -0.293 4.293 11 C -0.051 4.051 12 C -0.252 4.252 13 C 0.250 3.750 14 C -0.418 4.418 15 H 0.097 0.903 16 C 0.090 3.910 17 N -0.799 5.799 18 Si 0.976 3.024 19 H -0.260 1.260 20 H -0.322 1.322 21 H -0.269 1.269 22 N -0.555 5.555 23 C -0.086 4.086 24 C -0.152 4.152 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.408 0.592 29 H 0.131 0.869 30 H 0.145 0.855 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.288 0.712 35 H 0.130 0.870 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.743 -9.893 -4.292 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.292 3.708 3 O -0.396 6.396 4 N -0.318 5.318 5 C 0.039 3.961 6 C -0.146 4.146 7 C -0.095 4.095 8 C -0.041 4.041 9 C 0.057 3.943 10 C -0.316 4.316 11 C -0.075 4.075 12 C -0.275 4.275 13 C 0.126 3.874 14 C -0.449 4.449 15 H 0.115 0.885 16 C -0.133 4.133 17 N -0.423 5.423 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.254 1.254 21 H -0.194 1.194 22 N -0.272 5.272 23 C -0.106 4.106 24 C -0.172 4.172 25 H 0.109 0.891 26 H 0.113 0.887 27 H 0.107 0.893 28 H 0.244 0.756 29 H 0.149 0.851 30 H 0.162 0.838 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.099 0.901 35 H 0.148 0.852 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.716 -8.124 -3.887 18.988 hybrid contribution -0.263 -1.068 -0.670 1.288 sum -16.979 -9.192 -4.556 19.838 Atomic orbital electron populations 1.21919 0.90952 1.05892 1.04364 1.21004 0.90811 0.83352 0.75651 1.90792 1.70520 1.31203 1.47102 1.43513 1.05540 1.09614 1.73182 1.17763 0.82173 0.98063 0.98101 1.21065 0.94741 0.99397 0.99439 1.21669 0.92636 0.97386 0.97783 1.18864 0.91937 0.95254 0.98015 1.19369 0.90994 0.90465 0.93455 1.21124 0.94364 0.99769 1.16362 1.20910 0.94072 0.96619 0.95909 1.21754 0.99349 0.96090 1.10263 1.18525 0.86802 0.93245 0.88848 1.19453 1.02100 0.90393 1.32913 0.88506 1.26290 0.99116 0.94703 0.93192 1.69649 1.38603 1.03405 1.30594 0.85088 0.80286 0.72867 0.80901 1.18618 1.25351 1.19424 1.67109 1.10774 1.26490 1.22860 1.21022 0.93281 0.98100 0.98166 1.20651 0.93868 1.00613 1.02050 0.89122 0.88654 0.89268 0.75643 0.85103 0.83787 0.87667 0.87720 0.87339 0.90143 0.85186 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.32 36.00 0.37 -0.69 16 2 C 0.50 5.89 7.68 -10.99 -0.08 5.80 16 3 O -0.52 -8.88 14.73 5.55 0.08 -8.80 16 4 N -0.67 -7.19 5.33 -9.84 -0.05 -7.24 16 5 C 0.13 1.96 6.29 -83.68 -0.53 1.43 16 6 C -0.13 -2.27 8.64 -39.44 -0.34 -2.61 16 7 C -0.08 -1.55 9.49 -39.28 -0.37 -1.93 16 8 C -0.04 -0.79 5.86 -104.87 -0.61 -1.41 16 9 C 0.20 4.55 6.68 -82.94 -0.55 4.00 16 10 C -0.29 -6.08 9.43 -38.78 -0.37 -6.44 16 11 C -0.05 -1.06 10.15 -39.40 -0.40 -1.46 16 12 C -0.25 -5.89 9.83 -38.63 -0.38 -6.27 16 13 C 0.25 6.58 6.05 -85.01 -0.51 6.07 16 14 C -0.42 -11.56 9.66 -37.73 -0.36 -11.92 16 15 H 0.10 2.71 8.06 -52.48 -0.42 2.28 16 16 C 0.09 2.46 5.51 -17.35 -0.10 2.36 16 17 N -0.80 -21.83 13.92 55.55 0.77 -21.06 16 18 Si 0.98 24.77 25.20 -169.99 -4.28 20.49 16 19 H -0.26 -6.45 4.90 56.52 0.28 -6.18 16 20 H -0.32 -7.97 7.11 56.52 0.40 -7.57 16 21 H -0.27 -7.19 6.92 56.52 0.39 -6.80 16 22 N -0.55 -14.35 4.91 -7.69 -0.04 -14.39 16 23 C -0.09 -1.39 9.36 -39.27 -0.37 -1.76 16 24 C -0.15 -2.07 9.94 -39.45 -0.39 -2.47 16 25 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.41 2.60 8.81 -40.82 -0.36 2.24 16 29 H 0.13 2.38 6.37 -52.48 -0.33 2.05 16 30 H 0.14 3.26 5.13 -52.48 -0.27 2.99 16 31 H 0.11 1.83 6.42 -52.49 -0.34 1.50 16 32 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 34 H 0.29 7.21 8.29 -40.82 -0.34 6.87 16 35 H 0.13 1.84 6.41 -52.49 -0.34 1.50 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -32.84 305.98 -7.77 -40.62 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -3.86 Total: 3.07 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -5.00 Total: -17.30 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.68 Total: -42.69 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -4.28 Total: 20.49 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.84 -7.77 -40.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239753483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.427 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds