Wall clock time and date at job start Tue Mar 31 2020 05:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21285 * 119.99850 * 2 1 4 4 N 1.34779 * 120.00556 * 179.97438 * 2 1 3 5 5 C 1.39710 * 120.00548 * 185.08182 * 4 2 1 6 6 C 1.39033 * 119.94390 * 33.03655 * 5 4 2 7 7 C 1.37806 * 120.05541 * 180.02562 * 6 5 4 8 8 C 1.39482 * 119.94629 * 0.02562 * 7 6 5 9 9 C 1.48215 * 120.05759 * 180.02562 * 8 7 6 10 10 C 1.39957 * 119.61501 * 165.70228 * 9 8 7 11 11 C 1.38660 * 119.46176 * 180.02562 * 10 9 8 12 12 C 1.38313 * 118.69757 * 0.27215 * 11 10 9 13 13 C 1.40686 * 119.19391 * 359.45960 * 12 11 10 14 14 C 1.41355 * 119.76179 * 180.25443 * 13 12 11 15 15 H 1.08004 * 120.00374 * 340.45431 * 14 13 12 16 16 C 1.40015 * 119.99787 * 160.45755 * 14 13 12 17 17 N 1.30750 * 119.99694 * 166.22675 * 16 14 13 18 18 Si 1.86798 * 119.99970 * 346.22984 * 16 14 13 19 19 H 1.48499 * 109.47266 * 86.89243 * 18 16 14 20 20 H 1.48498 * 109.46765 * 206.88843 * 18 16 14 21 21 H 1.48496 * 109.47163 * 326.88800 * 18 16 14 22 22 N 1.32254 * 119.60915 * 345.72075 * 9 8 7 23 23 C 1.39489 * 119.89043 * 0.27772 * 8 7 6 24 24 C 1.37812 * 119.94308 * 359.46433 * 23 8 7 25 25 H 1.09003 * 109.47081 * 240.00055 * 1 2 3 26 26 H 1.08995 * 109.47093 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47061 * 120.00173 * 1 2 3 28 28 H 0.96998 * 119.99366 * 5.08632 * 4 2 1 29 29 H 1.08004 * 119.96847 * 359.97438 * 6 5 4 30 30 H 1.08004 * 120.02726 * 180.02562 * 7 6 5 31 31 H 1.08002 * 120.26910 * 0.03754 * 10 9 8 32 32 H 1.07999 * 120.65297 * 180.02562 * 11 10 9 33 33 H 1.07995 * 120.40163 * 179.70892 * 12 11 10 34 34 H 0.97006 * 119.99644 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.02807 * 179.72976 * 23 8 7 36 36 H 1.08000 * 119.97744 * 180.25430 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.5740 -1.1695 0.1077 6 6 4.2138 -0.1905 0.8594 7 6 5.5877 -0.1903 0.9663 8 6 6.3366 -1.1730 0.3190 9 6 7.8143 -1.1755 0.4327 10 6 8.5360 -2.3102 0.0449 11 6 9.9183 -2.3093 0.1531 12 6 10.5449 -1.1807 0.6499 13 6 9.7653 -0.0689 1.0178 14 6 10.3935 1.0927 1.5219 15 1 11.3961 1.0352 1.9193 16 6 9.7160 2.3180 1.5059 17 7 10.1713 3.3258 2.2033 18 14 8.1617 2.5125 0.4882 19 1 6.9881 2.0818 1.2897 20 1 7.9998 3.9365 0.0994 21 1 8.2617 1.6741 -0.7333 22 7 8.4356 -0.1054 0.8998 23 6 5.6927 -2.1505 -0.4398 24 6 4.3182 -2.1495 -0.5392 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 1.6988 -2.0056 -0.0736 29 1 3.6336 0.5710 1.3594 30 1 6.0843 0.5702 1.5507 31 1 8.0203 -3.1795 -0.3358 32 1 10.4942 -3.1743 -0.1410 33 1 11.6197 -1.1518 0.7503 34 1 9.7017 4.1746 2.1925 35 1 6.2706 -2.9099 -0.9454 36 1 3.8189 -2.9085 -1.1232 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239753483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:55 Heat of formation + Delta-G solvation = -12.268936 kcal Electronic energy + Delta-G solvation = -20808.698487 eV Core-core repulsion = 17641.975081 eV Total energy + Delta-G solvation = -3166.723405 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.58007 -40.60347 -39.19017 -36.15320 -35.50721 -33.17251 -33.08314 -31.92672 -31.19825 -29.25096 -27.48142 -24.74918 -24.30655 -22.84717 -22.25642 -21.32609 -19.62064 -18.95179 -18.00992 -17.85413 -16.82839 -16.69299 -16.55545 -16.09304 -15.47980 -15.38825 -14.97302 -14.76946 -14.71314 -14.46268 -14.30865 -13.86200 -13.42997 -13.40936 -13.09807 -12.94349 -12.80214 -12.73809 -12.33766 -12.11399 -11.88277 -11.64221 -11.22389 -10.96903 -10.40530 -9.96725 -9.95364 -9.74623 -8.96202 -8.77806 -6.71997 -0.22025 0.42409 0.72603 0.96424 1.35666 1.42635 1.51405 1.61833 2.09741 2.27701 2.51132 2.87649 3.52799 3.67086 3.75931 3.91914 4.02399 4.21302 4.40519 4.45216 4.48881 4.55598 4.62420 4.66523 4.75682 4.76991 4.91877 5.06855 5.10181 5.19801 5.26452 5.34591 5.46703 5.48869 5.64785 5.71310 5.98080 6.00391 6.11591 6.44056 6.56675 6.62510 7.14798 7.66688 8.04049 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.019406 B = 0.005276 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.522162 B = 5306.034525 C = 6591.489112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.497 3.503 3 O -0.584 6.584 4 N -0.656 5.656 5 C 0.145 3.855 6 C -0.144 4.144 7 C -0.101 4.101 8 C -0.075 4.075 9 C 0.172 3.828 10 C -0.269 4.269 11 C -0.043 4.043 12 C -0.269 4.269 13 C 0.233 3.767 14 C -0.460 4.460 15 H 0.078 0.922 16 C 0.067 3.933 17 N -0.835 5.835 18 Si 1.017 2.983 19 H -0.264 1.264 20 H -0.316 1.316 21 H -0.291 1.291 22 N -0.581 5.581 23 C -0.075 4.075 24 C -0.131 4.131 25 H 0.119 0.881 26 H 0.088 0.912 27 H 0.122 0.878 28 H 0.434 0.566 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.118 0.882 34 H 0.294 0.706 35 H 0.161 0.839 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.026 -14.526 -6.655 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.288 3.712 3 O -0.463 6.463 4 N -0.304 5.304 5 C 0.050 3.950 6 C -0.164 4.164 7 C -0.121 4.121 8 C -0.077 4.077 9 C 0.033 3.967 10 C -0.291 4.291 11 C -0.067 4.067 12 C -0.291 4.291 13 C 0.107 3.893 14 C -0.492 4.492 15 H 0.096 0.904 16 C -0.151 4.151 17 N -0.461 5.461 18 Si 0.851 3.149 19 H -0.191 1.191 20 H -0.248 1.248 21 H -0.218 1.218 22 N -0.300 5.300 23 C -0.094 4.094 24 C -0.151 4.151 25 H 0.137 0.863 26 H 0.107 0.893 27 H 0.141 0.859 28 H 0.275 0.725 29 H 0.134 0.866 30 H 0.123 0.877 31 H 0.171 0.829 32 H 0.172 0.828 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.179 0.821 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -20.057 -12.812 -6.252 24.607 hybrid contribution 0.541 0.036 -0.038 0.543 sum -19.516 -12.776 -6.290 24.159 Atomic orbital electron populations 1.21951 0.86114 1.06518 1.07226 1.22119 0.92998 0.82407 0.73656 1.90788 1.72129 1.33501 1.49833 1.43485 1.03843 1.10934 1.72119 1.17898 0.84338 0.96677 0.96093 1.20978 0.93754 1.00704 1.00996 1.21403 0.93888 0.97668 0.99112 1.18933 0.90547 0.97381 1.00791 1.20074 0.92867 0.90529 0.93218 1.21735 0.94576 0.99914 1.12842 1.21455 0.94529 0.96929 0.93737 1.21985 1.00004 0.96378 1.10704 1.18718 0.87570 0.93859 0.89112 1.19440 1.01927 0.91712 1.36166 0.90431 1.26595 1.00160 0.94737 0.93624 1.69652 1.39959 1.04020 1.32443 0.84481 0.78983 0.72350 0.79108 1.19094 1.24759 1.21773 1.66997 1.10750 1.28523 1.23693 1.21349 0.94586 0.96964 0.96484 1.21149 0.92882 1.00500 1.00570 0.86303 0.89297 0.85947 0.72528 0.86598 0.87733 0.82925 0.82785 0.86359 0.89529 0.82137 0.80481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 10.32 71.24 0.74 -0.60 16 2 C 0.50 10.39 7.68 87.66 0.67 11.06 16 3 O -0.58 -19.87 14.73 -3.05 -0.04 -19.91 16 4 N -0.66 -11.38 5.33 -303.43 -1.62 -13.00 16 5 C 0.15 3.85 6.29 38.27 0.24 4.09 16 6 C -0.14 -5.24 8.64 22.36 0.19 -5.05 16 7 C -0.10 -4.32 9.49 22.47 0.21 -4.10 16 8 C -0.08 -2.96 5.86 -20.02 -0.12 -3.08 16 9 C 0.17 7.79 6.68 42.15 0.28 8.07 16 10 C -0.27 -10.09 9.43 22.79 0.21 -9.88 16 11 C -0.04 -1.61 10.15 22.39 0.23 -1.39 16 12 C -0.27 -12.45 9.83 22.89 0.23 -12.23 16 13 C 0.23 12.74 6.05 40.25 0.24 12.99 16 14 C -0.46 -27.22 9.66 23.47 0.23 -26.99 16 15 H 0.08 4.70 8.06 -2.91 -0.02 4.67 16 16 C 0.07 3.95 5.51 85.28 0.47 4.42 16 17 N -0.83 -48.64 13.92 21.83 0.30 -48.34 16 18 Si 1.02 54.63 25.20 68.60 1.73 56.36 16 19 H -0.26 -14.20 4.90 99.48 0.49 -13.72 16 20 H -0.32 -16.22 7.11 99.48 0.71 -15.51 16 21 H -0.29 -16.39 6.92 99.48 0.69 -15.70 16 22 N -0.58 -31.09 4.91 -178.23 -0.87 -31.97 16 23 C -0.07 -2.08 9.36 22.47 0.21 -1.87 16 24 C -0.13 -2.87 9.94 22.36 0.22 -2.65 16 25 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.09 0.94 8.12 -2.39 -0.02 0.92 16 27 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.43 2.99 8.81 -92.71 -0.82 2.17 16 29 H 0.12 4.48 6.37 -2.91 -0.02 4.46 16 30 H 0.10 5.18 5.13 -2.91 -0.01 5.17 16 31 H 0.15 4.26 6.42 -2.91 -0.02 4.24 16 32 H 0.15 4.34 8.06 -2.91 -0.02 4.31 16 33 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 34 H 0.29 15.69 8.29 -92.70 -0.77 14.92 16 35 H 0.16 3.43 6.41 -2.91 -0.02 3.41 16 36 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -80.80 305.98 3.83 -76.97 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.07 Total: 7.10 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 4.26 Total: -27.21 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -2.19 Total: -93.31 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.04 Total: -19.91 kcal Atomic # 14 Polarization: 54.63 SS G_CDS: 1.73 Total: 56.36 kcal Total: -80.80 3.83 -76.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239753483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.700 kcal (2) G-P(sol) polarization free energy of solvation -80.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds