Wall clock time and date at job start Tue Mar 31 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 119.99874 * 2 1 4 4 N 1.34776 * 119.99868 * 179.97438 * 2 1 3 5 5 C 1.39469 * 119.99908 * 185.30178 * 4 2 1 6 6 C 1.38752 * 120.16169 * 20.65600 * 5 4 2 7 7 C 1.38113 * 120.07481 * 180.28039 * 6 5 4 8 8 C 1.38562 * 120.40907 * 359.74187 * 7 6 5 9 9 C 1.37822 * 120.32201 * 0.02562 * 8 7 6 10 10 C 1.39708 * 119.91642 * 359.97438 * 9 8 7 11 11 C 1.47613 * 120.19845 * 179.97438 * 10 9 8 12 12 N 1.32655 * 119.99787 * 229.67757 * 11 10 9 13 13 C 1.31731 * 121.70879 * 179.97438 * 12 11 10 14 14 C 1.38893 * 121.51358 * 0.02562 * 13 12 11 15 15 C 1.36873 * 119.81663 * 359.97438 * 14 13 12 16 16 C 1.41117 * 118.40632 * 0.28343 * 15 14 13 17 17 C 1.40831 * 120.72370 * 179.69765 * 16 15 14 18 18 H 1.08004 * 120.00049 * 208.04608 * 17 16 15 19 19 C 1.40052 * 120.00285 * 28.04521 * 17 16 15 20 20 N 1.30792 * 119.99669 * 11.75132 * 19 17 16 21 21 Si 1.86794 * 120.00289 * 191.75155 * 19 17 16 22 22 H 1.48496 * 109.47525 * 89.99878 * 21 19 17 23 23 H 1.48506 * 109.47025 * 210.00061 * 21 19 17 24 24 H 1.48501 * 109.47051 * 329.99579 * 21 19 17 25 25 H 1.09000 * 109.47133 * 240.00400 * 1 2 3 26 26 H 1.08993 * 109.47459 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47274 * 120.00810 * 1 2 3 28 28 H 0.96995 * 120.00294 * 5.30502 * 4 2 1 29 29 H 1.08003 * 119.96127 * 0.02562 * 6 5 4 30 30 H 1.08008 * 119.79374 * 179.77139 * 7 6 5 31 31 H 1.08004 * 119.83970 * 180.02562 * 8 7 6 32 32 H 1.08003 * 120.04303 * 179.97438 * 9 8 7 33 33 H 1.07989 * 119.24166 * 179.97438 * 13 12 11 34 34 H 1.07999 * 120.08635 * 179.97438 * 14 13 12 35 35 H 1.08002 * 120.79294 * 180.02562 * 15 14 13 36 36 H 0.96995 * 120.00077 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5711 -1.1698 0.1121 6 6 4.2301 -0.0690 0.6407 7 6 5.6072 -0.0711 0.7450 8 6 6.3404 -1.1709 0.3292 9 6 5.7026 -2.2750 -0.1939 10 6 4.3100 -2.2874 -0.3056 11 6 3.6205 -3.4664 -0.8654 12 7 2.7168 -3.3130 -1.8243 13 6 2.0818 -4.3414 -2.3482 14 6 2.3270 -5.6402 -1.9215 15 6 3.2475 -5.8701 -0.9350 16 6 3.9205 -4.7639 -0.3738 17 6 4.8725 -4.9437 0.6483 18 1 5.0468 -4.1578 1.3683 19 6 5.5931 -6.1418 0.7313 20 7 5.5569 -6.9965 -0.2580 21 14 6.6061 -6.5189 2.2547 22 1 5.7661 -7.2453 3.2405 23 1 7.7697 -7.3619 1.8793 24 1 7.0881 -5.2492 2.8554 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3634 -0.5140 -0.8899 28 1 1.6990 -2.0055 -0.0768 29 1 3.6657 0.7920 0.9670 30 1 6.1158 0.7896 1.1537 31 1 7.4170 -1.1629 0.4154 32 1 6.2785 -3.1296 -0.5170 33 1 1.3532 -4.1706 -3.1268 34 1 1.7927 -6.4664 -2.3668 35 1 3.4509 -6.8736 -0.5914 36 1 6.0556 -7.8264 -0.2005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239777281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:02 Heat of formation + Delta-G solvation = 13.271672 kcal Electronic energy + Delta-G solvation = -21564.902634 eV Core-core repulsion = 18399.286753 eV Total energy + Delta-G solvation = -3165.615882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.15298 -38.62947 -37.39042 -34.44430 -34.09555 -31.74227 -30.75048 -30.48326 -28.75082 -27.85762 -25.74941 -22.78232 -22.51627 -21.45150 -20.25357 -19.87776 -17.51431 -17.18826 -16.53313 -16.03680 -15.57994 -15.09447 -14.55299 -14.48168 -13.97370 -13.79033 -13.44452 -12.99578 -12.74154 -12.64714 -12.46057 -12.23817 -11.97113 -11.78386 -11.63462 -11.45914 -11.20127 -11.06361 -10.85415 -10.59358 -10.01251 -9.88756 -9.53938 -9.26157 -8.61874 -8.18178 -8.09416 -7.69451 -7.21573 -6.95151 -4.63799 1.77144 2.07174 2.54098 2.85869 2.94947 2.98860 2.99764 3.07470 3.57675 3.74715 4.43556 4.57317 4.96335 5.31911 5.36501 5.44477 5.50581 5.65812 5.76540 5.88361 5.96999 6.11279 6.16591 6.24072 6.36056 6.59841 6.71771 6.77596 6.90045 6.92883 7.04298 7.09654 7.21081 7.31782 7.57647 7.67125 7.77659 7.81301 7.95017 8.27939 8.47457 8.50095 8.56201 9.42360 9.89914 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016095 B = 0.006791 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.258314 B = 4122.385423 C = 5277.093194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.506 3.494 3 O -0.540 6.540 4 N -0.645 5.645 5 C 0.149 3.851 6 C -0.147 4.147 7 C -0.120 4.120 8 C -0.149 4.149 9 C -0.073 4.073 10 C -0.006 4.006 11 C 0.007 3.993 12 N -0.454 5.454 13 C -0.035 4.035 14 C -0.149 4.149 15 C -0.128 4.128 16 C 0.087 3.913 17 C -0.435 4.435 18 H 0.089 0.911 19 C 0.073 3.927 20 N -0.787 5.787 21 Si 0.912 3.088 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.257 1.257 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.414 0.586 29 H 0.144 0.856 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.873 3.971 2.731 6.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.295 3.705 3 O -0.418 6.418 4 N -0.288 5.288 5 C 0.053 3.947 6 C -0.167 4.167 7 C -0.139 4.139 8 C -0.167 4.167 9 C -0.093 4.093 10 C -0.009 4.009 11 C -0.131 4.131 12 N -0.162 5.162 13 C -0.196 4.196 14 C -0.169 4.169 15 C -0.153 4.153 16 C 0.082 3.918 17 C -0.464 4.464 18 H 0.107 0.893 19 C -0.146 4.146 20 N -0.411 5.411 21 Si 0.735 3.265 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.180 1.180 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.251 0.749 29 H 0.161 0.839 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.146 0.854 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.619 5.305 2.356 6.840 hybrid contribution 0.453 -1.876 0.673 2.044 sum -3.166 3.429 3.029 5.563 Atomic orbital electron populations 1.21903 0.91550 1.05259 1.04485 1.20845 0.90688 0.83270 0.75691 1.90602 1.70253 1.31669 1.49269 1.43355 1.05775 1.09877 1.69744 1.17888 0.82394 0.95547 0.98896 1.21353 0.94687 0.98937 1.01753 1.20904 0.93595 0.98041 1.01343 1.20944 0.99289 0.94133 1.02378 1.21151 0.93053 0.97633 0.97450 1.18156 0.92372 0.91890 0.98518 1.19422 1.02377 0.91506 0.99763 1.67124 1.05959 1.35035 1.08099 1.21674 1.04680 0.88691 1.04585 1.21446 0.99408 0.97060 0.98979 1.21458 0.95615 1.00007 0.98269 1.18352 0.91186 0.90610 0.91672 1.19619 1.16266 1.00080 1.10418 0.89323 1.26021 0.96507 0.95070 0.97018 1.69744 1.33512 1.08489 1.29396 0.86217 0.79198 0.79805 0.81247 1.19086 1.20020 1.18019 0.89414 0.88992 0.89168 0.74866 0.83854 0.86884 0.86845 0.85131 0.86173 0.88330 0.85434 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.32 36.01 0.37 -1.56 16 2 C 0.51 8.41 7.78 -10.98 -0.09 8.33 16 3 O -0.54 -10.53 14.02 5.56 0.08 -10.46 16 4 N -0.65 -11.80 4.94 -9.65 -0.05 -11.85 16 5 C 0.15 3.06 6.48 -83.40 -0.54 2.52 16 6 C -0.15 -2.86 8.76 -39.44 -0.35 -3.20 16 7 C -0.12 -2.11 10.03 -39.51 -0.40 -2.51 16 8 C -0.15 -2.68 10.02 -39.61 -0.40 -3.08 16 9 C -0.07 -1.53 8.03 -39.18 -0.31 -1.84 16 10 C -0.01 -0.14 5.08 -104.73 -0.53 -0.67 16 11 C 0.01 0.17 5.69 -82.26 -0.47 -0.30 16 12 N -0.45 -10.32 9.02 -9.19 -0.08 -10.40 16 13 C -0.04 -0.75 11.16 -17.35 -0.19 -0.94 16 14 C -0.15 -3.17 10.03 -39.83 -0.40 -3.57 16 15 C -0.13 -3.02 8.72 -38.98 -0.34 -3.36 16 16 C 0.09 2.11 5.56 -106.40 -0.59 1.52 16 17 C -0.43 -10.39 7.07 -37.92 -0.27 -10.66 16 18 H 0.09 2.11 6.72 -52.48 -0.35 1.75 16 19 C 0.07 1.67 5.26 -17.31 -0.09 1.57 16 20 N -0.79 -18.48 10.88 55.55 0.60 -17.87 16 21 Si 0.91 17.29 29.58 -169.99 -5.03 12.26 16 22 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16 23 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 24 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.41 7.40 7.15 -40.82 -0.29 7.10 16 29 H 0.14 2.78 5.47 -52.48 -0.29 2.49 16 30 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 31 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 32 H 0.13 2.81 7.30 -52.48 -0.38 2.42 16 33 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 34 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.13 3.08 6.30 -52.49 -0.33 2.75 16 36 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 LS Contribution 307.63 15.07 4.64 4.64 Total: -1.00 -27.67 307.63 -8.17 -35.84 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -3.74 Total: 15.59 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -4.59 Total: -17.75 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.47 Total: -40.12 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.67 -8.17 -35.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239777281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.115 kcal (2) G-P(sol) polarization free energy of solvation -27.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds