Wall clock time and date at job start Tue Mar 31 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 119.99874 * 2 1 4 4 N 1.34776 * 119.99868 * 179.97438 * 2 1 3 5 5 C 1.39469 * 119.99908 * 185.30178 * 4 2 1 6 6 C 1.38752 * 120.16169 * 20.65600 * 5 4 2 7 7 C 1.38113 * 120.07481 * 180.28039 * 6 5 4 8 8 C 1.38562 * 120.40907 * 359.74187 * 7 6 5 9 9 C 1.37822 * 120.32201 * 0.02562 * 8 7 6 10 10 C 1.39708 * 119.91642 * 359.97438 * 9 8 7 11 11 C 1.47613 * 120.19845 * 179.97438 * 10 9 8 12 12 N 1.32655 * 119.99787 * 229.67757 * 11 10 9 13 13 C 1.31731 * 121.70879 * 179.97438 * 12 11 10 14 14 C 1.38893 * 121.51358 * 0.02562 * 13 12 11 15 15 C 1.36873 * 119.81663 * 359.97438 * 14 13 12 16 16 C 1.41117 * 118.40632 * 0.28343 * 15 14 13 17 17 C 1.40831 * 120.72370 * 179.69765 * 16 15 14 18 18 H 1.08004 * 120.00049 * 208.04608 * 17 16 15 19 19 C 1.40052 * 120.00285 * 28.04521 * 17 16 15 20 20 N 1.30792 * 119.99669 * 11.75132 * 19 17 16 21 21 Si 1.86794 * 120.00289 * 191.75155 * 19 17 16 22 22 H 1.48496 * 109.47525 * 89.99878 * 21 19 17 23 23 H 1.48506 * 109.47025 * 210.00061 * 21 19 17 24 24 H 1.48501 * 109.47051 * 329.99579 * 21 19 17 25 25 H 1.09000 * 109.47133 * 240.00400 * 1 2 3 26 26 H 1.08993 * 109.47459 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47274 * 120.00810 * 1 2 3 28 28 H 0.96995 * 120.00294 * 5.30502 * 4 2 1 29 29 H 1.08003 * 119.96127 * 0.02562 * 6 5 4 30 30 H 1.08008 * 119.79374 * 179.77139 * 7 6 5 31 31 H 1.08004 * 119.83970 * 180.02562 * 8 7 6 32 32 H 1.08003 * 120.04303 * 179.97438 * 9 8 7 33 33 H 1.07989 * 119.24166 * 179.97438 * 13 12 11 34 34 H 1.07999 * 120.08635 * 179.97438 * 14 13 12 35 35 H 1.08002 * 120.79294 * 180.02562 * 15 14 13 36 36 H 0.96995 * 120.00077 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5711 -1.1698 0.1121 6 6 4.2301 -0.0690 0.6407 7 6 5.6072 -0.0711 0.7450 8 6 6.3404 -1.1709 0.3292 9 6 5.7026 -2.2750 -0.1939 10 6 4.3100 -2.2874 -0.3056 11 6 3.6205 -3.4664 -0.8654 12 7 2.7168 -3.3130 -1.8243 13 6 2.0818 -4.3414 -2.3482 14 6 2.3270 -5.6402 -1.9215 15 6 3.2475 -5.8701 -0.9350 16 6 3.9205 -4.7639 -0.3738 17 6 4.8725 -4.9437 0.6483 18 1 5.0468 -4.1578 1.3683 19 6 5.5931 -6.1418 0.7313 20 7 5.5569 -6.9965 -0.2580 21 14 6.6061 -6.5189 2.2547 22 1 5.7661 -7.2453 3.2405 23 1 7.7697 -7.3619 1.8793 24 1 7.0881 -5.2492 2.8554 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3634 -0.5140 -0.8899 28 1 1.6990 -2.0055 -0.0768 29 1 3.6657 0.7920 0.9670 30 1 6.1158 0.7896 1.1537 31 1 7.4170 -1.1629 0.4154 32 1 6.2785 -3.1296 -0.5170 33 1 1.3532 -4.1706 -3.1268 34 1 1.7927 -6.4664 -2.3668 35 1 3.4509 -6.8736 -0.5914 36 1 6.0556 -7.8264 -0.2005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239777281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:02 Heat of formation + Delta-G solvation = -1.639673 kcal Electronic energy + Delta-G solvation = -21565.549239 eV Core-core repulsion = 18399.286753 eV Total energy + Delta-G solvation = -3166.262486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.59579 -40.24839 -38.91569 -36.07416 -35.62641 -33.36247 -32.46842 -31.73585 -30.30741 -29.21286 -27.48200 -24.39582 -24.02616 -23.11187 -21.86143 -21.26754 -19.26057 -18.64449 -17.91462 -17.63027 -17.17491 -16.48821 -16.17927 -15.98538 -15.42485 -15.35452 -14.92179 -14.46709 -14.27793 -14.19083 -13.76094 -13.52885 -13.39595 -13.28627 -13.15969 -13.00639 -12.79085 -12.56103 -12.38169 -12.10675 -11.59528 -11.43974 -11.22361 -10.66010 -10.31868 -9.92093 -9.78594 -9.30450 -8.80785 -8.60870 -6.42485 0.21690 0.54631 0.87962 1.14929 1.38717 1.49365 1.51609 1.67709 2.16884 2.26888 2.72141 3.03648 3.64172 3.77997 3.88771 4.22144 4.28390 4.45357 4.50379 4.56358 4.60015 4.62225 4.74033 4.78703 4.87489 5.02140 5.04370 5.16372 5.23491 5.31234 5.50696 5.56333 5.71003 5.74951 5.84322 5.99753 6.03829 6.25529 6.50374 6.56561 6.73781 6.80691 7.13596 7.68195 8.22115 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.016095 B = 0.006791 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.258314 B = 4122.385423 C = 5277.093194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.500 3.500 3 O -0.572 6.572 4 N -0.649 5.649 5 C 0.137 3.863 6 C -0.158 4.158 7 C -0.109 4.109 8 C -0.145 4.145 9 C -0.087 4.087 10 C -0.037 4.037 11 C 0.001 3.999 12 N -0.465 5.465 13 C -0.035 4.035 14 C -0.146 4.146 15 C -0.149 4.149 16 C 0.060 3.940 17 C -0.454 4.454 18 H 0.080 0.920 19 C 0.040 3.960 20 N -0.817 5.817 21 Si 0.975 3.025 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.258 1.258 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.414 0.586 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.113 0.887 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 4.721 3.196 7.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.291 3.709 3 O -0.452 6.452 4 N -0.291 5.291 5 C 0.041 3.959 6 C -0.179 4.179 7 C -0.128 4.128 8 C -0.164 4.164 9 C -0.107 4.107 10 C -0.040 4.040 11 C -0.136 4.136 12 N -0.173 5.173 13 C -0.196 4.196 14 C -0.166 4.166 15 C -0.175 4.175 16 C 0.056 3.944 17 C -0.483 4.483 18 H 0.098 0.902 19 C -0.177 4.177 20 N -0.442 5.442 21 Si 0.796 3.204 22 H -0.186 1.186 23 H -0.192 1.192 24 H -0.181 1.181 25 H 0.129 0.871 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.251 0.749 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.131 0.869 33 H 0.171 0.829 34 H 0.147 0.853 35 H 0.134 0.866 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.026 6.054 2.810 7.795 hybrid contribution 0.514 -2.035 0.446 2.146 sum -3.513 4.019 3.256 6.252 Atomic orbital electron populations 1.21943 0.87012 1.06806 1.06309 1.21853 0.92752 0.82110 0.74147 1.90574 1.71464 1.32535 1.50668 1.43501 1.05074 1.10570 1.69910 1.18100 0.83660 0.95374 0.98764 1.21534 0.95678 0.98581 1.02060 1.21313 0.93000 0.98800 0.99649 1.21240 1.00882 0.93121 1.01117 1.21155 0.92839 0.98205 0.98491 1.18276 0.93064 0.92295 1.00345 1.19671 1.02417 0.91833 0.99719 1.67206 1.06271 1.35663 1.08190 1.22256 1.04434 0.88355 1.04525 1.21737 0.98621 0.98268 0.98013 1.21493 0.96924 0.99428 0.99694 1.18663 0.91935 0.91408 0.92438 1.19654 1.17194 1.00760 1.10734 0.90160 1.26714 0.97130 0.94453 0.99372 1.69782 1.34499 1.09055 1.30821 0.85268 0.77882 0.79446 0.77781 1.18618 1.19173 1.18117 0.87057 0.87623 0.87611 0.74886 0.83818 0.83254 0.83743 0.86907 0.82945 0.85340 0.86580 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 10.32 71.24 0.74 -2.49 16 2 C 0.50 16.12 7.78 87.66 0.68 16.80 16 3 O -0.57 -21.96 14.02 -3.03 -0.04 -22.00 16 4 N -0.65 -23.59 4.94 -302.82 -1.50 -25.09 16 5 C 0.14 5.69 6.48 38.56 0.25 5.94 16 6 C -0.16 -6.05 8.76 22.36 0.20 -5.85 16 7 C -0.11 -3.64 10.03 22.32 0.22 -3.42 16 8 C -0.14 -5.06 10.02 22.25 0.22 -4.83 16 9 C -0.09 -3.69 8.03 22.53 0.18 -3.51 16 10 C -0.04 -1.65 5.08 -19.93 -0.10 -1.75 16 11 C 0.00 0.06 5.69 42.42 0.24 0.30 16 12 N -0.47 -21.11 9.02 -182.99 -1.65 -22.76 16 13 C -0.04 -1.44 11.16 84.86 0.95 -0.50 16 14 C -0.15 -6.15 10.03 22.11 0.22 -5.92 16 15 C -0.15 -7.21 8.72 22.66 0.20 -7.01 16 16 C 0.06 3.03 5.56 -21.02 -0.12 2.91 16 17 C -0.45 -22.46 7.07 23.34 0.17 -22.29 16 18 H 0.08 3.97 6.72 -2.91 -0.02 3.95 16 19 C 0.04 1.84 5.26 85.29 0.45 2.29 16 20 N -0.82 -39.18 10.88 21.85 0.24 -38.94 16 21 Si 0.98 35.66 29.58 68.60 2.03 37.69 16 22 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 23 H -0.27 -9.33 7.11 99.48 0.71 -8.63 16 24 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 25 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.11 1.84 8.12 -2.39 -0.02 1.83 16 27 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.41 14.77 7.15 -92.71 -0.66 14.11 16 29 H 0.14 5.49 5.47 -2.91 -0.02 5.47 16 30 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 31 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 32 H 0.11 5.07 7.30 -2.91 -0.02 5.05 16 33 H 0.15 5.20 8.06 -2.92 -0.02 5.17 16 34 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.12 5.78 6.30 -2.91 -0.02 5.77 16 36 H 0.29 12.69 8.29 -92.71 -0.77 11.92 16 Total: -1.00 -61.20 307.63 4.03 -57.17 By element: Atomic # 1 Polarization: 42.81 SS G_CDS: 0.46 Total: 43.27 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 4.49 Total: -29.33 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -2.91 Total: -86.79 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.04 Total: -22.00 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Total: -61.20 4.03 -57.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239777281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.527 kcal (2) G-P(sol) polarization free energy of solvation -61.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds