Wall clock time and date at job start Tue Mar 31 2020 05:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21292 * 120.00494 * 2 1 4 4 N 1.34779 * 119.99894 * 179.97438 * 2 1 3 5 5 C 1.39522 * 120.00158 * 185.56694 * 4 2 1 6 6 C 1.38720 * 120.15902 * 19.57684 * 5 4 2 7 7 C 1.38138 * 120.07707 * 180.02562 * 6 5 4 8 8 C 1.38561 * 120.40201 * 0.02562 * 7 6 5 9 9 C 1.37844 * 120.31880 * 359.70125 * 8 7 6 10 10 C 1.39684 * 119.91464 * 0.55657 * 9 8 7 11 11 C 1.47660 * 120.19894 * 179.74141 * 10 9 8 12 12 C 1.39423 * 120.78941 * 64.72563 * 11 10 9 13 13 N 1.31637 * 120.64579 * 180.02562 * 12 11 10 14 14 C 1.32243 * 122.51248 * 359.97438 * 13 12 11 15 15 C 1.36441 * 121.53746 * 359.97438 * 14 13 12 16 16 C 1.41136 * 119.11738 * 0.02562 * 15 14 13 17 17 C 1.40857 * 121.11792 * 179.72213 * 16 15 14 18 18 H 1.07994 * 120.00144 * 154.47273 * 17 16 15 19 19 C 1.40166 * 119.99605 * 334.48008 * 17 16 15 20 20 N 1.30703 * 119.99682 * 159.48685 * 19 17 16 21 21 Si 1.86797 * 120.00100 * 339.47918 * 19 17 16 22 22 H 1.48503 * 109.46924 * 95.20922 * 21 19 17 23 23 H 1.48502 * 109.47224 * 215.20559 * 21 19 17 24 24 H 1.48498 * 109.47068 * 335.21267 * 21 19 17 25 25 H 1.08998 * 109.47118 * 240.00264 * 1 2 3 26 26 H 1.09003 * 109.47060 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46875 * 119.99406 * 1 2 3 28 28 H 0.97000 * 120.00256 * 5.57545 * 4 2 1 29 29 H 1.08000 * 119.96283 * 0.03756 * 6 5 4 30 30 H 1.07999 * 119.79992 * 180.02562 * 7 6 5 31 31 H 1.08000 * 119.84166 * 180.02562 * 8 7 6 32 32 H 1.07991 * 120.04462 * 180.27323 * 9 8 7 33 33 H 1.08001 * 119.67913 * 0.02562 * 12 11 10 34 34 H 1.08007 * 119.23484 * 180.02562 * 14 13 12 35 35 H 1.08002 * 120.44194 * 180.02562 * 15 14 13 36 36 H 0.96996 * 119.99479 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5711 -1.1701 0.1177 6 6 4.2296 -0.0621 0.6306 7 6 5.6062 -0.0665 0.7454 8 6 6.3392 -1.1739 0.3501 9 6 5.7014 -2.2860 -0.1565 10 6 4.3103 -2.2937 -0.2835 11 6 3.6211 -3.4794 -0.8307 12 6 3.6494 -4.6975 -0.1529 13 7 3.0344 -5.7529 -0.6436 14 6 2.3669 -5.7199 -1.7847 15 6 2.2764 -4.5779 -2.5259 16 6 2.9114 -3.4059 -2.0618 17 6 2.8500 -2.2054 -2.7960 18 1 2.9565 -1.2571 -2.2902 19 6 2.6506 -2.2415 -4.1829 20 7 2.1990 -1.1850 -4.8059 21 14 3.0305 -3.7995 -5.1409 22 1 1.7879 -4.5964 -5.3028 23 1 3.5659 -3.4400 -6.4786 24 1 4.0397 -4.6008 -4.4027 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5137 -0.8900 28 1 1.6993 -2.0053 -0.0807 29 1 3.6653 0.8050 0.9407 30 1 6.1142 0.7984 1.1457 31 1 7.4151 -1.1678 0.4443 32 1 6.2767 -3.1483 -0.4591 33 1 4.1811 -4.7760 0.7839 34 1 1.8813 -6.6177 -2.1379 35 1 1.7263 -4.5708 -3.4552 36 1 2.0614 -1.2099 -5.7657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239782389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:30 Heat of formation + Delta-G solvation = 15.900973 kcal Electronic energy + Delta-G solvation = -21939.329397 eV Core-core repulsion = 18773.827531 eV Total energy + Delta-G solvation = -3165.501867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.19803 -38.71465 -37.53029 -34.46823 -34.05257 -32.11938 -31.12708 -30.48152 -28.72970 -27.77273 -25.98173 -23.10824 -22.31215 -21.69205 -20.26192 -19.87576 -17.89243 -17.24456 -16.50382 -16.10271 -15.56000 -15.14547 -14.70812 -14.37910 -14.16466 -13.89509 -13.59096 -13.13656 -12.96189 -12.71377 -12.62695 -12.43237 -12.30640 -11.80685 -11.70130 -11.42405 -11.09505 -11.05745 -10.85108 -10.63505 -10.01165 -9.82582 -9.53462 -9.19815 -8.56299 -8.38439 -8.07658 -7.82417 -7.26254 -7.22711 -4.86659 1.77019 1.99358 2.39650 2.50041 2.94044 3.05497 3.06429 3.15481 3.62359 3.75182 4.36629 4.48714 5.05631 5.19084 5.41989 5.47029 5.55547 5.59671 5.64267 5.67584 5.90439 5.98232 6.02793 6.16864 6.22597 6.35743 6.44892 6.64664 6.79307 6.80510 6.95446 6.99888 7.08887 7.12430 7.21790 7.46135 7.69992 7.80724 7.96291 8.08681 8.31857 8.47830 8.55800 9.28176 9.72280 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.008225 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.155651 B = 3403.589470 C = 3987.944348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.513 3.487 3 O -0.535 6.535 4 N -0.649 5.649 5 C 0.157 3.843 6 C -0.144 4.144 7 C -0.120 4.120 8 C -0.145 4.145 9 C -0.100 4.100 10 C -0.012 4.012 11 C -0.231 4.231 12 C 0.141 3.859 13 N -0.583 5.583 14 C 0.118 3.882 15 C -0.290 4.290 16 C 0.117 3.883 17 C -0.417 4.417 18 H 0.104 0.896 19 C 0.086 3.914 20 N -0.776 5.776 21 Si 0.916 3.084 22 H -0.267 1.267 23 H -0.288 1.288 24 H -0.245 1.245 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.414 0.586 29 H 0.147 0.853 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.107 0.893 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.636 -0.295 5.620 5.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.302 3.698 3 O -0.413 6.413 4 N -0.290 5.290 5 C 0.062 3.938 6 C -0.164 4.164 7 C -0.139 4.139 8 C -0.164 4.164 9 C -0.118 4.118 10 C -0.015 4.015 11 C -0.237 4.237 12 C -0.014 4.014 13 N -0.297 5.297 14 C -0.032 4.032 15 C -0.313 4.313 16 C 0.109 3.891 17 C -0.446 4.446 18 H 0.122 0.878 19 C -0.138 4.138 20 N -0.398 5.398 21 Si 0.742 3.258 22 H -0.193 1.193 23 H -0.216 1.216 24 H -0.168 1.168 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.251 0.749 29 H 0.165 0.835 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.125 0.875 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.379 -0.152 5.868 5.883 hybrid contribution -0.162 -0.177 -1.408 1.428 sum -0.541 -0.329 4.460 4.505 Atomic orbital electron populations 1.21900 0.91481 1.05338 1.04498 1.20816 0.90717 0.83151 0.75121 1.90591 1.70188 1.31691 1.48852 1.43381 1.05631 1.09987 1.70014 1.17900 0.82584 0.95277 0.98050 1.21478 0.94735 0.98894 1.01277 1.20914 0.93656 0.97948 1.01362 1.20899 0.99109 0.94106 1.02270 1.21029 0.92974 0.98155 0.99681 1.18298 0.92277 0.93110 0.97805 1.19349 1.09392 0.93815 1.01125 1.22241 0.94423 0.87786 0.96960 1.67428 1.16080 1.30806 1.15426 1.21649 0.94628 0.96124 0.90809 1.21599 1.10052 0.95894 1.03723 1.17802 0.87962 0.92225 0.91144 1.19677 1.38217 0.94625 0.92055 0.87849 1.26358 0.90546 0.98144 0.98786 1.69650 1.27244 1.30796 1.12070 0.86249 0.80658 0.81142 0.77725 1.19299 1.21558 1.16775 0.89572 0.89018 0.88810 0.74930 0.83547 0.86828 0.86963 0.86379 0.85582 0.86037 0.87516 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.32 36.00 0.37 -1.87 16 2 C 0.51 9.20 7.78 -10.99 -0.09 9.11 16 3 O -0.54 -11.22 13.98 5.55 0.08 -11.14 16 4 N -0.65 -12.02 3.92 -9.64 -0.04 -12.06 16 5 C 0.16 3.14 5.36 -83.38 -0.45 2.70 16 6 C -0.14 -2.76 8.77 -39.44 -0.35 -3.10 16 7 C -0.12 -2.04 10.03 -39.50 -0.40 -2.44 16 8 C -0.14 -2.40 10.03 -39.61 -0.40 -2.80 16 9 C -0.10 -1.83 9.75 -39.19 -0.38 -2.21 16 10 C -0.01 -0.24 4.75 -104.71 -0.50 -0.73 16 11 C -0.23 -4.93 4.47 -104.05 -0.47 -5.40 16 12 C 0.14 2.89 10.92 -17.19 -0.19 2.70 16 13 N -0.58 -12.43 10.32 -13.34 -0.14 -12.56 16 14 C 0.12 2.45 11.08 -18.02 -0.20 2.25 16 15 C -0.29 -6.41 7.27 -39.13 -0.28 -6.69 16 16 C 0.12 2.68 4.66 -106.25 -0.49 2.18 16 17 C -0.42 -10.29 8.62 -37.87 -0.33 -10.61 16 18 H 0.10 2.76 5.82 -52.49 -0.31 2.46 16 19 C 0.09 2.08 5.41 -17.31 -0.09 1.99 16 20 N -0.78 -19.20 13.92 55.56 0.77 -18.43 16 21 Si 0.92 19.53 24.51 -169.99 -4.17 15.36 16 22 H -0.27 -5.43 6.64 56.52 0.38 -5.06 16 23 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.24 -5.47 6.87 56.52 0.39 -5.08 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.09 1.10 8.12 -51.93 -0.42 0.68 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.41 7.38 7.43 -40.82 -0.30 7.08 16 29 H 0.15 2.87 5.41 -52.49 -0.28 2.59 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 33 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 34 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 35 H 0.11 2.32 4.45 -52.49 -0.23 2.09 16 36 H 0.29 6.50 8.29 -40.82 -0.34 6.16 16 LS Contribution 302.58 15.07 4.56 4.56 Total: -1.00 -28.25 302.58 -6.84 -35.09 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -3.68 Total: 14.11 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -4.23 Total: -14.93 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.60 Total: -43.05 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.17 Total: 15.36 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.25 -6.84 -35.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239782389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.992 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds