Wall clock time and date at job start Tue Mar 31 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21292 * 120.00494 * 2 1 4 4 N 1.34779 * 119.99894 * 179.97438 * 2 1 3 5 5 C 1.39522 * 120.00158 * 185.56694 * 4 2 1 6 6 C 1.38720 * 120.15902 * 19.57684 * 5 4 2 7 7 C 1.38138 * 120.07707 * 180.02562 * 6 5 4 8 8 C 1.38561 * 120.40201 * 0.02562 * 7 6 5 9 9 C 1.37844 * 120.31880 * 359.70125 * 8 7 6 10 10 C 1.39684 * 119.91464 * 0.55657 * 9 8 7 11 11 C 1.47660 * 120.19894 * 179.74141 * 10 9 8 12 12 C 1.39423 * 120.78941 * 64.72563 * 11 10 9 13 13 N 1.31637 * 120.64579 * 180.02562 * 12 11 10 14 14 C 1.32243 * 122.51248 * 359.97438 * 13 12 11 15 15 C 1.36441 * 121.53746 * 359.97438 * 14 13 12 16 16 C 1.41136 * 119.11738 * 0.02562 * 15 14 13 17 17 C 1.40857 * 121.11792 * 179.72213 * 16 15 14 18 18 H 1.07994 * 120.00144 * 154.47273 * 17 16 15 19 19 C 1.40166 * 119.99605 * 334.48008 * 17 16 15 20 20 N 1.30703 * 119.99682 * 159.48685 * 19 17 16 21 21 Si 1.86797 * 120.00100 * 339.47918 * 19 17 16 22 22 H 1.48503 * 109.46924 * 95.20922 * 21 19 17 23 23 H 1.48502 * 109.47224 * 215.20559 * 21 19 17 24 24 H 1.48498 * 109.47068 * 335.21267 * 21 19 17 25 25 H 1.08998 * 109.47118 * 240.00264 * 1 2 3 26 26 H 1.09003 * 109.47060 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46875 * 119.99406 * 1 2 3 28 28 H 0.97000 * 120.00256 * 5.57545 * 4 2 1 29 29 H 1.08000 * 119.96283 * 0.03756 * 6 5 4 30 30 H 1.07999 * 119.79992 * 180.02562 * 7 6 5 31 31 H 1.08000 * 119.84166 * 180.02562 * 8 7 6 32 32 H 1.07991 * 120.04462 * 180.27323 * 9 8 7 33 33 H 1.08001 * 119.67913 * 0.02562 * 12 11 10 34 34 H 1.08007 * 119.23484 * 180.02562 * 14 13 12 35 35 H 1.08002 * 120.44194 * 180.02562 * 15 14 13 36 36 H 0.96996 * 119.99479 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5711 -1.1701 0.1177 6 6 4.2296 -0.0621 0.6306 7 6 5.6062 -0.0665 0.7454 8 6 6.3392 -1.1739 0.3501 9 6 5.7014 -2.2860 -0.1565 10 6 4.3103 -2.2937 -0.2835 11 6 3.6211 -3.4794 -0.8307 12 6 3.6494 -4.6975 -0.1529 13 7 3.0344 -5.7529 -0.6436 14 6 2.3669 -5.7199 -1.7847 15 6 2.2764 -4.5779 -2.5259 16 6 2.9114 -3.4059 -2.0618 17 6 2.8500 -2.2054 -2.7960 18 1 2.9565 -1.2571 -2.2902 19 6 2.6506 -2.2415 -4.1829 20 7 2.1990 -1.1850 -4.8059 21 14 3.0305 -3.7995 -5.1409 22 1 1.7879 -4.5964 -5.3028 23 1 3.5659 -3.4400 -6.4786 24 1 4.0397 -4.6008 -4.4027 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5137 -0.8900 28 1 1.6993 -2.0053 -0.0807 29 1 3.6653 0.8050 0.9407 30 1 6.1142 0.7984 1.1457 31 1 7.4151 -1.1678 0.4443 32 1 6.2767 -3.1483 -0.4591 33 1 4.1811 -4.7760 0.7839 34 1 1.8813 -6.6177 -2.1379 35 1 1.7263 -4.5708 -3.4552 36 1 2.0614 -1.2099 -5.7657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239782389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:29 Heat of formation + Delta-G solvation = -0.735352 kcal Electronic energy + Delta-G solvation = -21940.050802 eV Core-core repulsion = 18773.827531 eV Total energy + Delta-G solvation = -3166.223272 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.66704 -40.33764 -39.00388 -36.11198 -35.63557 -33.73962 -32.81034 -31.76846 -30.21210 -29.16360 -27.71514 -24.66567 -23.76674 -23.36204 -21.81340 -21.30398 -19.66319 -18.69270 -17.93787 -17.71570 -17.10984 -16.66387 -16.25198 -16.06059 -15.63912 -15.37947 -15.08433 -14.77356 -14.44584 -14.29067 -14.16392 -13.80365 -13.45828 -13.40367 -13.08052 -12.91968 -12.75072 -12.57691 -12.50047 -12.18880 -11.62605 -11.41119 -11.23300 -10.64912 -10.20991 -10.08419 -9.72808 -9.35066 -9.04938 -8.71006 -6.68551 0.26909 0.53852 0.75683 0.80751 1.22679 1.38104 1.44339 1.67079 2.02404 2.27427 2.61011 3.03435 3.48270 3.77663 3.89128 4.11452 4.20584 4.31996 4.35694 4.43749 4.57443 4.60183 4.64634 4.70485 4.75372 4.81372 5.00672 5.08987 5.17497 5.28739 5.35681 5.49300 5.58529 5.70797 5.74194 5.77170 6.08482 6.23961 6.29817 6.51374 6.59261 6.66402 7.14089 7.59519 7.99486 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.008225 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.155651 B = 3403.589470 C = 3987.944348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.502 3.498 3 O -0.573 6.573 4 N -0.648 5.648 5 C 0.141 3.859 6 C -0.163 4.163 7 C -0.116 4.116 8 C -0.139 4.139 9 C -0.107 4.107 10 C -0.039 4.039 11 C -0.224 4.224 12 C 0.139 3.861 13 N -0.583 5.583 14 C 0.117 3.883 15 C -0.301 4.301 16 C 0.111 3.889 17 C -0.441 4.441 18 H 0.073 0.927 19 C 0.055 3.945 20 N -0.816 5.816 21 Si 0.964 3.036 22 H -0.249 1.249 23 H -0.281 1.281 24 H -0.260 1.260 25 H 0.119 0.881 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.415 0.585 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.129 0.871 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.110 0.890 36 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 -1.773 6.290 6.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.293 3.707 3 O -0.453 6.453 4 N -0.289 5.289 5 C 0.045 3.955 6 C -0.184 4.184 7 C -0.134 4.134 8 C -0.157 4.157 9 C -0.125 4.125 10 C -0.042 4.042 11 C -0.229 4.229 12 C -0.017 4.017 13 N -0.298 5.298 14 C -0.033 4.033 15 C -0.323 4.323 16 C 0.103 3.897 17 C -0.470 4.470 18 H 0.091 0.909 19 C -0.165 4.165 20 N -0.439 5.439 21 Si 0.788 3.212 22 H -0.174 1.174 23 H -0.208 1.208 24 H -0.184 1.184 25 H 0.137 0.863 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.251 0.749 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.167 0.833 32 H 0.147 0.853 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.127 0.873 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.122 -1.638 6.547 6.750 hybrid contribution -0.242 0.254 -1.449 1.491 sum -0.120 -1.384 5.098 5.284 Atomic orbital electron populations 1.21925 0.87606 1.06583 1.06057 1.21735 0.92635 0.82378 0.73928 1.90562 1.71389 1.32761 1.50626 1.43453 1.05435 1.10260 1.69767 1.18137 0.83349 0.95573 0.98431 1.21590 0.95975 0.98520 1.02272 1.21305 0.92864 0.99124 1.00142 1.21265 1.00899 0.92927 1.00627 1.21285 0.92371 0.99333 0.99529 1.18421 0.93291 0.93118 0.99358 1.19539 1.08424 0.94645 1.00323 1.22608 0.94196 0.87245 0.97602 1.67522 1.15733 1.31034 1.15475 1.22110 0.94101 0.96853 0.90284 1.21725 1.10296 0.96051 1.04245 1.17948 0.87991 0.92106 0.91687 1.19516 1.40843 0.94047 0.92641 0.90893 1.26928 0.90176 1.00215 0.99188 1.69676 1.29182 1.32308 1.12781 0.85532 0.80605 0.78421 0.76684 1.17415 1.20819 1.18433 0.86304 0.88001 0.88640 0.74879 0.84501 0.83870 0.83292 0.85261 0.83222 0.82877 0.87252 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 10.32 71.24 0.74 -3.40 16 2 C 0.50 18.46 7.78 87.66 0.68 19.15 16 3 O -0.57 -24.90 13.98 -3.07 -0.04 -24.94 16 4 N -0.65 -24.62 3.92 -302.78 -1.19 -25.81 16 5 C 0.14 5.71 5.36 38.55 0.21 5.92 16 6 C -0.16 -6.32 8.77 22.36 0.20 -6.12 16 7 C -0.12 -3.77 10.03 22.32 0.22 -3.54 16 8 C -0.14 -4.27 10.03 22.25 0.22 -4.04 16 9 C -0.11 -3.77 9.75 22.53 0.22 -3.55 16 10 C -0.04 -1.56 4.75 -19.92 -0.09 -1.65 16 11 C -0.22 -9.42 4.47 -19.49 -0.09 -9.51 16 12 C 0.14 5.40 10.92 85.01 0.93 6.33 16 13 N -0.58 -23.43 10.32 -196.13 -2.02 -25.46 16 14 C 0.12 4.59 11.08 84.21 0.93 5.52 16 15 C -0.30 -12.89 7.27 22.56 0.16 -12.72 16 16 C 0.11 5.07 4.66 -20.92 -0.10 4.97 16 17 C -0.44 -22.28 8.62 23.38 0.20 -22.08 16 18 H 0.07 4.08 5.82 -2.91 -0.02 4.06 16 19 C 0.06 2.71 5.41 85.33 0.46 3.17 16 20 N -0.82 -41.39 13.92 21.86 0.30 -41.09 16 21 Si 0.96 39.81 24.51 68.60 1.68 41.49 16 22 H -0.25 -9.47 6.64 99.48 0.66 -8.81 16 23 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.26 -11.30 6.87 99.48 0.68 -10.61 16 25 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.10 2.38 8.12 -2.39 -0.02 2.36 16 27 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.41 15.11 7.43 -92.71 -0.69 14.42 16 29 H 0.14 5.54 5.41 -2.91 -0.02 5.52 16 30 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 31 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 32 H 0.13 4.19 8.06 -2.92 -0.02 4.16 16 33 H 0.15 5.07 8.06 -2.91 -0.02 5.05 16 34 H 0.15 4.97 8.06 -2.91 -0.02 4.95 16 35 H 0.11 4.59 4.45 -2.91 -0.01 4.58 16 36 H 0.30 13.59 8.29 -92.71 -0.77 12.83 16 Total: -1.00 -61.59 302.58 4.00 -57.58 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: 0.37 Total: 39.79 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 4.90 Total: -21.57 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -2.91 Total: -92.35 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.04 Total: -24.94 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 1.68 Total: 41.49 kcal Total: -61.59 4.00 -57.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239782389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.847 kcal (2) G-P(sol) polarization free energy of solvation -61.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds