Wall clock time and date at job start Tue Mar 31 2020 05:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34771 * 120.00175 * 2 1 4 4 O 1.21540 * 120.00024 * 0.02562 * 3 2 1 5 5 C 1.48008 * 120.00296 * 180.02562 * 3 2 1 6 6 C 1.39520 * 119.57220 * 180.02562 * 5 3 2 7 7 C 1.38187 * 119.21332 * 179.97438 * 6 5 3 8 8 C 1.40048 * 118.36530 * 359.75372 * 7 6 5 9 9 C 1.47854 * 120.46308 * 180.23900 * 8 7 6 10 10 C 1.40001 * 119.88761 * 359.96111 * 9 8 7 11 11 C 1.36231 * 120.11424 * 179.75697 * 10 9 8 12 12 C 1.40959 * 119.88489 * 0.50959 * 11 10 9 13 13 C 1.40966 * 120.11478 * 179.71673 * 12 11 10 14 14 H 1.08002 * 120.00260 * 24.70773 * 13 12 11 15 15 C 1.40106 * 120.00273 * 204.70852 * 13 12 11 16 16 N 1.30741 * 119.99585 * 17.93265 * 15 13 12 17 17 Si 1.86799 * 120.00189 * 197.93473 * 15 13 12 18 18 H 1.48498 * 109.46997 * 90.00147 * 17 15 13 19 19 H 1.48502 * 109.47052 * 209.99947 * 17 15 13 20 20 H 1.48498 * 109.47147 * 329.99910 * 17 15 13 21 21 C 1.40962 * 119.77022 * 359.74499 * 12 11 10 22 22 C 1.36221 * 119.88307 * 359.97438 * 21 12 11 23 23 C 1.39957 * 119.06993 * 0.47210 * 8 7 6 24 24 N 1.31279 * 120.69810 * 359.51317 * 23 8 7 25 25 H 1.08995 * 109.47258 * 60.00042 * 1 2 3 26 26 H 1.09001 * 109.46916 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46784 * 299.99730 * 1 2 3 28 28 H 0.97005 * 119.99822 * 180.02562 * 2 1 3 29 29 H 1.08002 * 120.39395 * 359.97438 * 6 5 3 30 30 H 1.08003 * 120.82220 * 180.02562 * 7 6 5 31 31 H 1.07998 * 119.94552 * 359.97438 * 10 9 8 32 32 H 1.07996 * 120.05703 * 180.25305 * 11 10 9 33 33 H 0.97000 * 119.99638 * 179.97438 * 16 15 13 34 34 H 1.07996 * 120.05740 * 179.97438 * 21 12 11 35 35 H 1.08006 * 119.94423 * 180.02562 * 22 21 12 36 36 H 1.08004 * 119.65117 * 179.80002 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2197 0.0005 5 6 3.6190 1.1672 -0.0006 6 6 4.3075 2.3806 0.0000 7 6 5.6894 2.3720 0.0000 8 6 6.3470 1.1355 0.0047 9 6 7.8242 1.0722 0.0102 10 6 8.5732 2.2550 0.0099 11 6 9.9344 2.2021 0.0200 12 6 10.5887 0.9536 0.0199 13 6 11.9971 0.8931 0.0242 14 1 12.5718 1.7182 0.4185 15 6 12.6514 -0.2372 -0.4828 16 7 12.0116 -1.0669 -1.2648 17 14 14.4378 -0.5588 -0.0416 18 1 14.5023 -1.3820 1.1927 19 1 15.1000 -1.2842 -1.1555 20 1 15.1313 0.7339 0.1887 21 6 9.8299 -0.2344 0.0148 22 6 8.4692 -0.1705 0.0105 23 6 5.5864 -0.0393 -0.0008 24 7 4.2746 0.0116 -0.0007 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9500 -0.8401 -0.0004 29 1 3.7669 3.3156 0.0004 30 1 6.2485 3.2960 0.0008 31 1 8.0710 3.2111 0.0052 32 1 10.5112 3.1151 0.0239 33 1 12.4647 -1.8493 -1.6162 34 1 10.3264 -1.1934 0.0143 35 1 7.8868 -1.0800 0.0070 36 1 6.0839 -0.9979 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239844619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:36 Heat of formation + Delta-G solvation = 7.581711 kcal Electronic energy + Delta-G solvation = -20064.891816 eV Core-core repulsion = 16899.029199 eV Total energy + Delta-G solvation = -3165.862617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.21804 -38.81382 -37.55895 -34.60363 -34.31529 -32.38203 -31.57919 -29.75349 -29.29672 -27.20671 -25.44571 -23.64178 -23.01702 -21.08105 -20.54275 -20.13198 -18.26056 -17.60309 -16.46056 -15.95125 -15.44305 -15.24671 -15.12228 -14.83570 -14.16451 -13.61458 -13.60563 -13.36805 -13.09461 -12.89558 -12.70674 -12.38632 -12.36029 -12.04039 -11.77215 -11.45155 -11.28834 -11.04825 -10.74114 -10.17082 -9.99976 -9.73120 -9.70257 -9.40287 -9.15838 -9.09792 -8.85463 -7.84083 -7.32850 -7.12510 -4.64105 0.86630 1.65916 2.44329 2.84977 2.88360 2.91056 2.91794 3.25721 3.28240 3.65014 4.16621 4.47074 4.50460 5.02325 5.19075 5.31885 5.39394 5.40175 5.44005 5.44632 5.64322 5.82363 5.92152 6.10968 6.21082 6.39102 6.41665 6.52830 6.66386 6.72678 6.93598 7.03066 7.09334 7.30467 7.49795 7.60728 7.73140 7.82664 7.93387 8.10909 8.27855 8.36758 8.49310 8.62541 9.75453 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.048395 B = 0.002976 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.436523 B = 9406.174906 C = 9903.243255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.724 5.724 3 C 0.580 3.420 4 O -0.548 6.548 5 C 0.005 3.995 6 C -0.089 4.089 7 C -0.129 4.129 8 C 0.012 3.988 9 C -0.219 4.219 10 C -0.052 4.052 11 C -0.231 4.231 12 C 0.122 3.878 13 C -0.433 4.433 14 H 0.086 0.914 15 C 0.071 3.929 16 N -0.766 5.766 17 Si 0.916 3.084 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.174 4.174 22 C -0.066 4.066 23 C 0.064 3.936 24 N -0.449 5.449 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.412 0.588 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.289 0.711 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.920 -1.329 1.538 9.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.375 5.375 3 C 0.367 3.633 4 O -0.426 6.426 5 C -0.131 4.131 6 C -0.109 4.109 7 C -0.154 4.154 8 C 0.009 3.991 9 C -0.221 4.221 10 C -0.070 4.070 11 C -0.250 4.250 12 C 0.118 3.882 13 C -0.460 4.460 14 H 0.104 0.896 15 C -0.151 4.151 16 N -0.388 5.388 17 Si 0.739 3.261 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.193 4.193 22 C -0.085 4.085 23 C -0.099 4.099 24 N -0.159 5.159 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.247 0.753 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.138 0.862 35 H 0.114 0.886 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.889 -1.551 1.375 10.104 hybrid contribution 1.541 0.131 0.026 1.547 sum -8.348 -1.420 1.401 8.583 Atomic orbital electron populations 1.21526 0.79840 1.02062 1.02145 1.45621 1.07308 1.09368 1.75233 1.17975 0.86280 0.83561 0.75452 1.90734 1.69397 1.31467 1.50969 1.20573 0.93020 0.90057 1.09483 1.21833 0.94431 0.98568 0.96110 1.21565 0.93375 0.98374 1.02047 1.20192 0.94872 0.93168 0.90822 1.17906 0.88592 0.94028 1.21545 1.20429 0.94036 0.95604 0.96969 1.20708 0.93516 0.96979 1.13803 1.17800 0.93345 0.91112 0.85919 1.19879 0.92009 1.01702 1.32366 0.89556 1.26135 1.01649 0.94774 0.92516 1.69778 1.39121 1.10340 1.19601 0.86165 0.80613 0.79929 0.79385 1.18811 1.19894 1.18213 1.21011 0.92258 0.98941 1.07061 1.20530 0.94881 0.94914 0.98175 1.22755 0.88078 0.98444 1.00610 1.67244 1.10866 1.28364 1.09476 0.92335 0.90721 0.92345 0.75253 0.84571 0.84647 0.88727 0.88421 0.90002 0.86151 0.88646 0.82418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.70 59.85 0.64 1.49 16 2 N -0.72 -9.11 5.70 -68.00 -0.39 -9.50 16 3 C 0.58 9.36 7.80 -12.26 -0.10 9.26 16 4 O -0.55 -10.07 16.31 5.33 0.09 -9.98 16 5 C 0.00 0.08 6.75 -82.94 -0.56 -0.48 16 6 C -0.09 -1.45 9.61 -39.12 -0.38 -1.83 16 7 C -0.13 -2.16 9.52 -38.92 -0.37 -2.53 16 8 C 0.01 0.22 5.90 -104.64 -0.62 -0.40 16 9 C -0.22 -4.48 5.90 -104.64 -0.62 -5.10 16 10 C -0.05 -1.07 9.37 -39.64 -0.37 -1.44 16 11 C -0.23 -5.13 9.73 -39.27 -0.38 -5.51 16 12 C 0.12 2.92 5.57 -106.80 -0.60 2.33 16 13 C -0.43 -10.23 9.03 -37.85 -0.34 -10.57 16 14 H 0.09 1.94 7.91 -52.49 -0.42 1.53 16 15 C 0.07 1.59 5.13 -17.32 -0.09 1.50 16 16 N -0.77 -17.66 10.96 55.56 0.61 -17.05 16 17 Si 0.92 16.55 29.60 -169.99 -5.03 11.52 16 18 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 19 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 21 C -0.17 -4.06 8.63 -39.28 -0.34 -4.40 16 22 C -0.07 -1.41 9.37 -39.64 -0.37 -1.78 16 23 C 0.06 1.09 10.60 -17.14 -0.18 0.91 16 24 N -0.45 -7.48 9.51 -9.46 -0.09 -7.57 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.41 4.66 8.15 -40.82 -0.33 4.33 16 29 H 0.14 2.06 7.63 -52.49 -0.40 1.66 16 30 H 0.14 2.04 6.29 -52.48 -0.33 1.71 16 31 H 0.09 1.68 6.23 -52.49 -0.33 1.35 16 32 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.29 5.98 8.29 -40.82 -0.34 5.64 16 34 H 0.12 2.88 6.16 -52.49 -0.32 2.56 16 35 H 0.10 1.77 6.19 -52.48 -0.33 1.44 16 36 H 0.16 2.47 6.19 -52.48 -0.33 2.14 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -26.76 312.54 -8.37 -35.13 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -3.60 Total: 11.30 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -4.67 Total: -18.56 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.13 Total: -34.12 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.03 Total: 11.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.76 -8.37 -35.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239844619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.712 kcal (2) G-P(sol) polarization free energy of solvation -26.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds