Wall clock time and date at job start Tue Mar 31 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 120.00207 * 2 1 4 4 O 1.21535 * 119.99805 * 359.97438 * 3 2 1 5 5 C 1.48031 * 120.00083 * 180.02562 * 3 2 1 6 6 C 1.39448 * 119.59244 * 179.97438 * 5 3 2 7 7 C 1.38296 * 119.18186 * 180.02562 * 6 5 3 8 8 C 1.39759 * 118.38715 * 0.02562 * 7 6 5 9 9 C 1.48286 * 120.44022 * 179.97438 * 8 7 6 10 10 C 1.39786 * 120.00944 * 359.72264 * 9 8 7 11 11 C 1.38366 * 120.37682 * 180.29279 * 10 9 8 12 12 C 1.37732 * 120.38608 * 359.96454 * 11 10 9 13 13 C 1.40760 * 120.00650 * 0.03604 * 12 11 10 14 14 C 1.41422 * 120.18564 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00266 * 204.49245 * 14 13 12 16 16 C 1.39941 * 120.00277 * 24.49101 * 14 13 12 17 17 N 1.30826 * 119.99652 * 17.90269 * 16 14 13 18 18 Si 1.86797 * 120.00102 * 197.90546 * 16 14 13 19 19 H 1.48498 * 109.46983 * 90.00116 * 18 16 14 20 20 H 1.48497 * 109.46906 * 210.00109 * 18 16 14 21 21 H 1.48502 * 109.47265 * 329.99976 * 18 16 14 22 22 C 1.38809 * 120.00473 * 179.97438 * 9 8 7 23 23 C 1.39707 * 119.11480 * 0.27361 * 8 7 6 24 24 N 1.31340 * 120.73572 * 359.42273 * 23 8 7 25 25 H 1.08999 * 109.47334 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47004 * 300.00303 * 1 2 3 27 27 H 1.09003 * 109.47308 * 59.99904 * 1 2 3 28 28 H 0.96997 * 119.99430 * 179.97438 * 2 1 3 29 29 H 1.07999 * 120.40886 * 0.03979 * 6 5 3 30 30 H 1.07997 * 120.79951 * 180.02562 * 7 6 5 31 31 H 1.08000 * 119.80998 * 0.28232 * 10 9 8 32 32 H 1.07996 * 119.80870 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.99786 * 180.02562 * 12 11 10 34 34 H 0.96995 * 119.99988 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.19490 * 359.74374 * 22 9 8 36 36 H 1.08006 * 119.62551 * 179.70543 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5313 2.2197 -0.0005 5 6 3.6193 1.1671 -0.0006 6 6 4.3079 2.3797 -0.0011 7 6 5.6909 2.3698 -0.0022 8 6 6.3465 1.1355 -0.0032 9 6 7.8280 1.0717 -0.0050 10 6 8.5785 2.2510 -0.0114 11 6 9.9612 2.2003 -0.0192 12 6 10.6139 0.9875 -0.0199 13 6 9.8742 -0.2100 -0.0135 14 6 10.5405 -1.4575 -0.0137 15 1 10.0423 -2.3358 -0.3969 16 6 11.8453 -1.5539 0.4827 17 7 12.3233 -0.6109 1.2534 18 14 12.9046 -3.0288 0.0448 19 1 13.6643 -2.7410 -1.1983 20 1 13.8543 -3.3026 1.1531 21 1 12.0374 -4.2153 -0.1684 22 6 8.4698 -0.1591 -0.0055 23 6 5.5874 -0.0374 -0.0090 24 7 4.2750 0.0124 -0.0020 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.9499 -0.8401 0.0004 29 1 3.7680 3.3150 -0.0005 30 1 6.2505 3.2934 -0.0022 31 1 8.0762 3.2071 -0.0105 32 1 10.5320 3.1171 -0.0246 33 1 11.6934 0.9553 -0.0256 34 1 13.2278 -0.6775 1.5972 35 1 7.8932 -1.0723 -0.0004 36 1 6.0856 -0.9957 -0.0147 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239851110.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:37 Heat of formation + Delta-G solvation = 10.403447 kcal Electronic energy + Delta-G solvation = -20142.064857 eV Core-core repulsion = 16976.324600 eV Total energy + Delta-G solvation = -3165.740257 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44711 -38.96794 -37.47177 -34.72823 -34.10647 -32.51944 -31.74790 -30.03529 -28.84993 -26.81995 -25.55990 -23.92470 -23.32505 -21.06788 -20.53963 -20.20458 -18.36755 -17.48955 -16.54271 -15.77809 -15.39055 -15.23325 -15.18278 -14.99002 -14.45538 -13.77837 -13.66739 -13.38791 -13.13009 -12.98340 -12.82984 -12.48952 -12.43331 -11.81973 -11.72082 -11.38391 -11.18001 -10.88677 -10.59024 -10.30177 -9.96274 -9.76565 -9.69924 -9.37269 -9.26658 -9.23399 -9.00899 -7.67888 -7.23819 -6.89313 -4.51158 0.67456 1.44363 2.50080 2.67441 3.00622 3.04038 3.05614 3.13202 3.20901 3.83947 4.11793 4.26625 4.53630 4.89298 5.07857 5.12967 5.14572 5.22572 5.32418 5.52395 5.55337 5.62418 5.84581 6.13757 6.16847 6.26978 6.27808 6.35357 6.69230 6.78017 6.90936 7.05506 7.14365 7.34456 7.37232 7.61851 7.82309 7.86350 7.90119 8.07682 8.19085 8.44856 8.72914 8.76580 10.05790 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029912 B = 0.003326 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.847062 B = 8417.136858 C = 9265.404297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.721 5.721 3 C 0.578 3.422 4 O -0.542 6.542 5 C 0.038 3.962 6 C -0.103 4.103 7 C -0.095 4.095 8 C -0.025 4.025 9 C -0.050 4.050 10 C -0.214 4.214 11 C -0.108 4.108 12 C -0.147 4.147 13 C 0.105 3.895 14 C -0.463 4.463 15 H 0.080 0.920 16 C 0.076 3.924 17 N -0.792 5.792 18 Si 0.910 3.090 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.261 1.261 22 C -0.196 4.196 23 C 0.093 3.907 24 N -0.456 5.456 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.413 0.587 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.282 0.718 35 H 0.100 0.900 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.438 0.168 -1.737 11.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.372 5.372 3 C 0.364 3.636 4 O -0.419 6.419 5 C -0.099 4.099 6 C -0.123 4.123 7 C -0.120 4.120 8 C -0.027 4.027 9 C -0.051 4.051 10 C -0.233 4.233 11 C -0.127 4.127 12 C -0.166 4.166 13 C 0.103 3.897 14 C -0.492 4.492 15 H 0.098 0.902 16 C -0.142 4.142 17 N -0.417 5.417 18 Si 0.734 3.266 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.185 1.185 22 C -0.216 4.216 23 C -0.068 4.068 24 N -0.167 5.167 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.249 0.751 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.139 0.861 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.239 0.209 -1.582 12.343 hybrid contribution 1.358 -0.242 -0.034 1.380 sum -10.881 -0.033 -1.616 11.000 Atomic orbital electron populations 1.21560 0.79554 1.02270 1.02270 1.45630 1.07502 1.09312 1.74790 1.17949 0.86118 0.83746 0.75795 1.90754 1.69222 1.31409 1.50519 1.20819 0.93430 0.90126 1.05520 1.21948 0.94436 0.98880 0.97077 1.21722 0.93432 0.98691 0.98125 1.20395 0.95338 0.93482 0.93472 1.18172 0.88152 0.94660 1.04119 1.20440 0.93818 0.95295 1.13783 1.20649 0.93705 0.97081 1.01232 1.21512 1.00160 0.91271 1.03705 1.17543 0.90479 0.93482 0.88203 1.19588 0.97924 0.95356 1.36318 0.90165 1.25915 0.98215 0.97651 0.92431 1.69801 1.16824 1.32897 1.22224 0.86283 0.79691 0.81551 0.79083 1.19210 1.20276 1.18512 1.21104 0.94662 0.94508 1.11295 1.22966 0.88004 0.98913 0.96870 1.67396 1.10776 1.28204 1.10365 0.90549 0.92204 0.92198 0.75109 0.83987 0.83940 0.88870 0.88868 0.86125 0.90679 0.88180 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.70 59.85 0.64 1.41 16 2 N -0.72 -8.39 5.70 -67.98 -0.39 -8.78 16 3 C 0.58 8.65 7.81 -12.24 -0.10 8.56 16 4 O -0.54 -9.33 16.31 5.34 0.09 -9.24 16 5 C 0.04 0.60 6.75 -82.99 -0.56 0.04 16 6 C -0.10 -1.55 9.62 -39.11 -0.38 -1.92 16 7 C -0.09 -1.48 9.52 -38.99 -0.37 -1.85 16 8 C -0.02 -0.44 5.90 -104.65 -0.62 -1.05 16 9 C -0.05 -1.03 5.87 -104.97 -0.62 -1.65 16 10 C -0.21 -4.37 9.45 -38.96 -0.37 -4.74 16 11 C -0.11 -2.35 10.01 -39.72 -0.40 -2.75 16 12 C -0.15 -3.57 8.69 -38.81 -0.34 -3.91 16 13 C 0.11 2.61 5.57 -106.87 -0.60 2.01 16 14 C -0.46 -11.48 9.05 -37.73 -0.34 -11.82 16 15 H 0.08 1.90 7.91 -52.49 -0.42 1.49 16 16 C 0.08 1.80 5.14 -17.34 -0.09 1.72 16 17 N -0.79 -19.43 10.96 55.55 0.61 -18.82 16 18 Si 0.91 17.72 29.60 -169.99 -5.03 12.69 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 22 C -0.20 -4.38 9.18 -38.50 -0.35 -4.73 16 23 C 0.09 1.54 10.59 -17.21 -0.18 1.36 16 24 N -0.46 -7.15 9.52 -9.54 -0.09 -7.24 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.41 4.30 8.15 -40.82 -0.33 3.97 16 29 H 0.14 1.94 7.63 -52.49 -0.40 1.54 16 30 H 0.14 1.99 6.29 -52.49 -0.33 1.66 16 31 H 0.09 1.64 6.24 -52.49 -0.33 1.32 16 32 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.12 3.03 6.15 -52.49 -0.32 2.70 16 34 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 35 H 0.10 2.04 6.21 -52.49 -0.33 1.71 16 36 H 0.17 2.56 6.21 -52.48 -0.33 2.24 16 LS Contribution 312.80 15.07 4.71 4.71 Total: -1.00 -27.76 312.80 -8.37 -36.13 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -3.61 Total: 9.89 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -4.66 Total: -19.33 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.13 Total: -34.85 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.76 -8.37 -36.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239851110.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.529 kcal (2) G-P(sol) polarization free energy of solvation -27.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds