Wall clock time and date at job start Tue Mar 31 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34776 * 120.00207 * 2 1 4 4 O 1.21535 * 119.99805 * 359.97438 * 3 2 1 5 5 C 1.48031 * 120.00083 * 180.02562 * 3 2 1 6 6 C 1.39448 * 119.59244 * 179.97438 * 5 3 2 7 7 C 1.38296 * 119.18186 * 180.02562 * 6 5 3 8 8 C 1.39759 * 118.38715 * 0.02562 * 7 6 5 9 9 C 1.48286 * 120.44022 * 179.97438 * 8 7 6 10 10 C 1.39786 * 120.00944 * 359.72264 * 9 8 7 11 11 C 1.38366 * 120.37682 * 180.29279 * 10 9 8 12 12 C 1.37732 * 120.38608 * 359.96454 * 11 10 9 13 13 C 1.40760 * 120.00650 * 0.03604 * 12 11 10 14 14 C 1.41422 * 120.18564 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00266 * 204.49245 * 14 13 12 16 16 C 1.39941 * 120.00277 * 24.49101 * 14 13 12 17 17 N 1.30826 * 119.99652 * 17.90269 * 16 14 13 18 18 Si 1.86797 * 120.00102 * 197.90546 * 16 14 13 19 19 H 1.48498 * 109.46983 * 90.00116 * 18 16 14 20 20 H 1.48497 * 109.46906 * 210.00109 * 18 16 14 21 21 H 1.48502 * 109.47265 * 329.99976 * 18 16 14 22 22 C 1.38809 * 120.00473 * 179.97438 * 9 8 7 23 23 C 1.39707 * 119.11480 * 0.27361 * 8 7 6 24 24 N 1.31340 * 120.73572 * 359.42273 * 23 8 7 25 25 H 1.08999 * 109.47334 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47004 * 300.00303 * 1 2 3 27 27 H 1.09003 * 109.47308 * 59.99904 * 1 2 3 28 28 H 0.96997 * 119.99430 * 179.97438 * 2 1 3 29 29 H 1.07999 * 120.40886 * 0.03979 * 6 5 3 30 30 H 1.07997 * 120.79951 * 180.02562 * 7 6 5 31 31 H 1.08000 * 119.80998 * 0.28232 * 10 9 8 32 32 H 1.07996 * 119.80870 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.99786 * 180.02562 * 12 11 10 34 34 H 0.96995 * 119.99988 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.19490 * 359.74374 * 22 9 8 36 36 H 1.08006 * 119.62551 * 179.70543 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5313 2.2197 -0.0005 5 6 3.6193 1.1671 -0.0006 6 6 4.3079 2.3797 -0.0011 7 6 5.6909 2.3698 -0.0022 8 6 6.3465 1.1355 -0.0032 9 6 7.8280 1.0717 -0.0050 10 6 8.5785 2.2510 -0.0114 11 6 9.9612 2.2003 -0.0192 12 6 10.6139 0.9875 -0.0199 13 6 9.8742 -0.2100 -0.0135 14 6 10.5405 -1.4575 -0.0137 15 1 10.0423 -2.3358 -0.3969 16 6 11.8453 -1.5539 0.4827 17 7 12.3233 -0.6109 1.2534 18 14 12.9046 -3.0288 0.0448 19 1 13.6643 -2.7410 -1.1983 20 1 13.8543 -3.3026 1.1531 21 1 12.0374 -4.2153 -0.1684 22 6 8.4698 -0.1591 -0.0055 23 6 5.5874 -0.0374 -0.0090 24 7 4.2750 0.0124 -0.0020 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.9499 -0.8401 0.0004 29 1 3.7680 3.3150 -0.0005 30 1 6.2505 3.2934 -0.0022 31 1 8.0762 3.2071 -0.0105 32 1 10.5320 3.1171 -0.0246 33 1 11.6934 0.9553 -0.0256 34 1 13.2278 -0.6775 1.5972 35 1 7.8932 -1.0723 -0.0004 36 1 6.0856 -0.9957 -0.0147 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239851110.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:37 Heat of formation + Delta-G solvation = -5.479741 kcal Electronic energy + Delta-G solvation = -20142.753604 eV Core-core repulsion = 16976.324600 eV Total energy + Delta-G solvation = -3166.429004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68672 -40.22134 -39.07294 -35.86203 -35.68061 -33.94874 -33.07064 -31.75801 -30.26759 -27.85671 -27.28790 -25.19576 -24.69072 -22.46084 -22.15103 -21.57749 -19.51513 -19.15551 -17.82875 -17.29923 -16.70342 -16.48754 -16.48023 -16.41223 -15.75117 -15.07615 -14.97621 -14.92182 -14.62797 -14.35828 -14.01430 -13.85100 -13.47556 -13.19799 -13.09097 -13.01029 -12.73509 -12.58346 -12.13957 -11.65855 -11.54333 -11.30175 -11.20693 -10.93445 -10.58024 -10.50971 -10.16767 -9.43031 -8.85708 -8.63910 -6.35255 -0.64607 0.19921 0.97270 1.03610 1.40498 1.51157 1.52835 1.80413 2.12251 2.21666 2.67710 2.93695 3.07947 3.72321 3.76303 3.78184 3.90569 3.97177 4.23667 4.43535 4.46398 4.62081 4.64289 4.72354 4.90421 4.95374 4.99063 5.09022 5.10642 5.26633 5.33986 5.43919 5.55644 5.65423 5.93797 6.06210 6.11937 6.28980 6.35074 6.66148 6.71414 6.93026 6.99077 7.08065 8.33210 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029912 B = 0.003326 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.847062 B = 8417.136858 C = 9265.404297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.709 5.709 3 C 0.572 3.428 4 O -0.568 6.568 5 C 0.038 3.962 6 C -0.104 4.104 7 C -0.081 4.081 8 C -0.049 4.049 9 C -0.044 4.044 10 C -0.214 4.214 11 C -0.111 4.111 12 C -0.179 4.179 13 C 0.076 3.924 14 C -0.499 4.499 15 H 0.079 0.921 16 C 0.036 3.964 17 N -0.826 5.826 18 Si 0.979 3.021 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.257 1.257 22 C -0.211 4.211 23 C 0.093 3.907 24 N -0.454 5.454 25 H 0.112 0.888 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.420 0.580 29 H 0.159 0.841 30 H 0.163 0.837 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.288 0.712 35 H 0.110 0.890 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.165 0.228 -1.949 13.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.359 5.359 3 C 0.358 3.642 4 O -0.447 6.447 5 C -0.099 4.099 6 C -0.125 4.125 7 C -0.106 4.106 8 C -0.051 4.051 9 C -0.045 4.045 10 C -0.232 4.232 11 C -0.129 4.129 12 C -0.198 4.198 13 C 0.074 3.926 14 C -0.528 4.528 15 H 0.097 0.903 16 C -0.178 4.178 17 N -0.452 5.452 18 Si 0.801 3.199 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.181 1.181 22 C -0.231 4.231 23 C -0.067 4.067 24 N -0.165 5.165 25 H 0.131 0.869 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.257 0.743 29 H 0.177 0.823 30 H 0.180 0.820 31 H 0.145 0.855 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -13.987 0.242 -1.794 14.104 hybrid contribution 1.627 -0.170 0.032 1.636 sum -12.360 0.072 -1.762 12.485 Atomic orbital electron populations 1.21807 0.77573 1.04662 1.02054 1.45690 1.08847 1.08596 1.72812 1.17934 0.85851 0.84323 0.76105 1.90744 1.69474 1.32390 1.52138 1.21177 0.94184 0.90391 1.04145 1.22144 0.94240 0.99472 0.96616 1.21920 0.93738 0.98612 0.96327 1.20273 0.93778 0.94859 0.96237 1.18405 0.89915 0.94013 1.02189 1.20841 0.93401 0.96789 1.12216 1.20937 0.94725 0.97026 1.00237 1.21469 0.99499 0.92449 1.06412 1.17887 0.91824 0.93854 0.89024 1.19836 0.99339 0.95612 1.38038 0.90319 1.26708 0.98930 1.00417 0.91786 1.69861 1.17422 1.34748 1.23160 0.85234 0.77834 0.78036 0.78836 1.18852 1.19518 1.18098 1.21294 0.94034 0.95991 1.11751 1.23063 0.88329 0.98991 0.96320 1.67443 1.10211 1.28264 1.10601 0.86944 0.92418 0.92366 0.74325 0.82341 0.81952 0.85501 0.86612 0.87992 0.90154 0.87199 0.81097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.70 127.77 1.37 2.59 16 2 N -0.71 -14.80 5.70 -487.27 -2.78 -17.57 16 3 C 0.57 15.96 7.81 86.84 0.68 16.64 16 4 O -0.57 -18.51 16.31 -3.83 -0.06 -18.57 16 5 C 0.04 1.12 6.75 41.89 0.28 1.40 16 6 C -0.10 -2.87 9.62 22.58 0.22 -2.65 16 7 C -0.08 -2.31 9.52 22.65 0.22 -2.10 16 8 C -0.05 -1.66 5.90 -19.88 -0.12 -1.78 16 9 C -0.04 -1.79 5.87 -20.09 -0.12 -1.91 16 10 C -0.21 -8.39 9.45 22.67 0.21 -8.17 16 11 C -0.11 -4.79 10.01 22.18 0.22 -4.57 16 12 C -0.18 -8.96 8.69 22.77 0.20 -8.77 16 13 C 0.08 3.91 5.57 -21.32 -0.12 3.79 16 14 C -0.50 -25.73 9.05 23.47 0.21 -25.52 16 15 H 0.08 3.89 7.91 -2.91 -0.02 3.87 16 16 C 0.04 1.78 5.14 85.26 0.44 2.21 16 17 N -0.83 -41.94 10.96 21.83 0.24 -41.70 16 18 Si 0.98 36.99 29.60 68.60 2.03 39.02 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 21 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 22 C -0.21 -9.58 9.18 22.97 0.21 -9.37 16 23 C 0.09 2.95 10.59 85.12 0.90 3.85 16 24 N -0.45 -13.39 9.52 -184.09 -1.75 -15.14 16 25 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.42 7.68 8.15 -92.71 -0.76 6.92 16 29 H 0.16 3.87 7.63 -2.91 -0.02 3.85 16 30 H 0.16 3.92 6.29 -2.91 -0.02 3.90 16 31 H 0.13 4.05 6.24 -2.91 -0.02 4.03 16 32 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 33 H 0.10 5.39 6.15 -2.91 -0.02 5.37 16 34 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 35 H 0.11 4.57 6.21 -2.91 -0.02 4.56 16 36 H 0.17 5.16 6.21 -2.91 -0.02 5.14 16 Total: -1.00 -60.91 312.80 2.86 -58.05 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.38 Total: 30.24 kcal Atomic # 6 Polarization: -39.14 SS G_CDS: 4.80 Total: -34.34 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -4.29 Total: -74.41 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.06 Total: -18.57 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.02 kcal Total: -60.91 2.86 -58.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239851110.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.575 kcal (2) G-P(sol) polarization free energy of solvation -60.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds