Wall clock time and date at job start Tue Mar 31 2020 05:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34774 * 120.00263 * 2 1 4 4 O 1.21543 * 119.99808 * 0.02562 * 3 2 1 5 5 C 1.47978 * 120.00491 * 179.97438 * 3 2 1 6 6 C 1.39536 * 119.56697 * 180.02562 * 5 3 2 7 7 C 1.38181 * 119.21521 * 179.78986 * 6 5 3 8 8 C 1.40095 * 118.36250 * 0.43121 * 7 6 5 9 9 C 1.47725 * 120.47038 * 179.80544 * 8 7 6 10 10 C 1.39244 * 120.34014 * 309.69803 * 9 8 7 11 11 C 1.38065 * 119.97960 * 180.02562 * 10 9 8 12 12 C 1.38942 * 120.68260 * 359.97438 * 11 10 9 13 13 C 1.36436 * 120.70401 * 0.02562 * 12 11 10 14 14 C 1.40766 * 119.98668 * 359.97438 * 13 12 11 15 15 C 1.40815 * 120.32983 * 179.97438 * 14 13 12 16 16 H 1.08009 * 119.99905 * 153.03391 * 15 14 13 17 17 C 1.40158 * 120.00461 * 333.02818 * 15 14 13 18 18 N 1.30719 * 120.00118 * 344.52823 * 17 15 14 19 19 Si 1.86802 * 120.00395 * 164.52666 * 17 15 14 20 20 H 1.48502 * 109.46944 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47062 * 120.00190 * 19 17 15 22 22 H 1.48493 * 109.47158 * 240.00318 * 19 17 15 23 23 C 1.40019 * 119.06309 * 359.52818 * 8 7 6 24 24 N 1.31275 * 120.68733 * 0.27167 * 23 8 7 25 25 H 1.08995 * 109.47214 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46946 * 300.00206 * 1 2 3 27 27 H 1.08996 * 109.46822 * 59.99918 * 1 2 3 28 28 H 0.96998 * 119.99885 * 179.97438 * 2 1 3 29 29 H 1.07993 * 120.39288 * 0.02562 * 6 5 3 30 30 H 1.07998 * 120.82084 * 180.23618 * 7 6 5 31 31 H 1.08003 * 120.00482 * 0.04534 * 10 9 8 32 32 H 1.07997 * 119.65863 * 180.27507 * 11 10 9 33 33 H 1.08005 * 119.64723 * 179.97438 * 12 11 10 34 34 H 1.07993 * 120.00347 * 180.02562 * 13 12 11 35 35 H 0.96993 * 120.00349 * 179.97438 * 18 17 15 36 36 H 1.08000 * 119.65595 * 180.25079 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5313 2.2198 0.0005 5 6 3.6188 1.1672 0.0006 6 6 4.3072 2.3809 0.0011 7 6 5.6890 2.3725 0.0061 8 6 6.3470 1.1357 0.0011 9 6 7.8229 1.0724 0.0018 10 6 8.5591 1.8131 -0.9192 11 6 9.9382 1.7480 -0.9123 12 6 10.6056 0.9485 0.0075 13 6 9.9121 0.2112 0.9222 14 6 8.5052 0.2559 0.9410 15 6 7.7822 -0.5026 1.8816 16 1 6.8040 -0.1753 2.2020 17 6 8.3317 -1.6822 2.4020 18 7 9.3555 -2.2418 1.8127 19 14 7.6010 -2.4549 3.9378 20 1 6.4569 -1.6336 4.4088 21 1 7.1286 -3.8275 3.6246 22 1 8.6362 -2.5181 5.0006 23 6 5.5860 -0.0397 0.0014 24 7 4.2743 0.0115 0.0010 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9500 -0.8400 0.0004 29 1 3.7666 3.3157 0.0015 30 1 6.2480 3.2965 0.0104 31 1 8.0514 2.4387 -1.6385 32 1 10.5042 2.3281 -1.6260 33 1 11.6849 0.9097 -0.0024 34 1 10.4424 -0.4061 1.6322 35 1 9.7361 -3.0580 2.1731 36 1 6.0834 -0.9983 0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239851721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:39 Heat of formation + Delta-G solvation = 8.523706 kcal Electronic energy + Delta-G solvation = -20835.700660 eV Core-core repulsion = 17669.878891 eV Total energy + Delta-G solvation = -3165.821769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.12847 -38.73572 -37.41643 -34.52423 -33.92865 -32.58661 -31.44220 -29.77471 -28.89137 -26.80136 -25.49776 -23.66557 -22.81099 -21.04844 -20.66102 -19.89389 -18.08052 -17.46636 -16.29261 -15.91041 -15.25977 -15.16726 -14.98966 -14.56245 -14.32700 -13.73375 -13.60377 -13.19787 -12.91606 -12.78516 -12.51803 -12.45207 -12.29407 -11.86017 -11.59372 -11.39686 -11.23451 -10.89222 -10.60028 -10.06857 -9.90186 -9.71942 -9.41368 -9.36644 -9.09256 -9.05543 -8.53425 -7.61040 -7.42186 -6.97966 -4.58372 1.08024 1.80456 2.57230 2.74651 2.97480 3.03205 3.08344 3.20073 3.35148 3.77651 4.39928 4.44609 4.58986 5.12524 5.30346 5.39956 5.45674 5.51535 5.52009 5.66864 5.70826 5.97873 6.07801 6.26719 6.29805 6.46165 6.48158 6.58205 6.73836 6.87441 6.99978 7.13928 7.22796 7.35526 7.57949 7.67962 7.79921 7.90168 8.03187 8.21644 8.38196 8.46951 8.61825 8.71500 9.92685 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.005618 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.214529 B = 4982.547525 C = 6498.869843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.722 5.722 3 C 0.579 3.421 4 O -0.548 6.548 5 C 0.026 3.974 6 C -0.105 4.105 7 C -0.109 4.109 8 C 0.010 3.990 9 C -0.202 4.202 10 C -0.064 4.064 11 C -0.241 4.241 12 C -0.097 4.097 13 C -0.155 4.155 14 C 0.135 3.865 15 C -0.450 4.450 16 H 0.083 0.917 17 C 0.078 3.922 18 N -0.781 5.781 19 Si 0.906 3.094 20 H -0.258 1.258 21 H -0.271 1.271 22 H -0.270 1.270 23 C 0.112 3.888 24 N -0.463 5.463 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.413 0.587 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.285 0.715 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 0.578 -1.416 7.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.374 5.374 3 C 0.366 3.634 4 O -0.425 6.425 5 C -0.110 4.110 6 C -0.126 4.126 7 C -0.134 4.134 8 C 0.007 3.993 9 C -0.204 4.204 10 C -0.082 4.082 11 C -0.260 4.260 12 C -0.116 4.116 13 C -0.174 4.174 14 C 0.132 3.868 15 C -0.478 4.478 16 H 0.101 0.899 17 C -0.142 4.142 18 N -0.404 5.404 19 Si 0.729 3.271 20 H -0.182 1.182 21 H -0.196 1.196 22 H -0.195 1.195 23 C -0.050 4.050 24 N -0.174 5.174 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.249 0.751 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.987 0.349 -1.401 8.116 hybrid contribution 0.596 -0.099 0.675 0.906 sum -7.391 0.250 -0.726 7.431 Atomic orbital electron populations 1.21528 0.79857 1.02074 1.02105 1.45634 1.07315 1.09448 1.75006 1.18003 0.86335 0.83575 0.75471 1.90731 1.69413 1.31472 1.50890 1.20712 0.93101 0.90261 1.06936 1.21831 0.94481 0.98533 0.97744 1.21731 0.93330 0.98400 0.99925 1.20069 0.94906 0.92802 0.91485 1.18421 0.88822 1.10298 1.02838 1.20573 0.93707 0.97055 0.96884 1.20303 0.93790 1.07364 1.04586 1.20533 0.97751 0.97058 0.96212 1.21073 0.94166 1.01429 1.00764 1.17507 0.91764 0.88275 0.89222 1.19646 1.03496 1.04892 1.19799 0.89933 1.25964 0.94063 0.96844 0.97301 1.69752 1.19074 1.16163 1.35458 0.86272 0.80245 0.79366 0.81170 1.18173 1.19605 1.19504 1.23134 0.87380 0.99389 0.95053 1.67400 1.11183 1.27945 1.10882 0.90710 0.92342 0.92358 0.75095 0.84613 0.84833 0.89054 0.89169 0.89239 0.86246 0.90422 0.81341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 10.70 59.85 0.64 1.56 16 2 N -0.72 -9.85 5.70 -68.00 -0.39 -10.24 16 3 C 0.58 9.88 7.80 -12.27 -0.10 9.79 16 4 O -0.55 -10.44 16.31 5.33 0.09 -10.36 16 5 C 0.03 0.47 6.75 -82.95 -0.56 -0.09 16 6 C -0.10 -1.82 9.61 -39.12 -0.38 -2.20 16 7 C -0.11 -1.94 9.68 -38.91 -0.38 -2.32 16 8 C 0.01 0.20 4.94 -104.66 -0.52 -0.32 16 9 C -0.20 -4.44 5.54 -104.24 -0.58 -5.02 16 10 C -0.06 -1.32 9.54 -39.27 -0.37 -1.70 16 11 C -0.24 -4.98 10.03 -39.38 -0.39 -5.37 16 12 C -0.10 -2.09 9.96 -39.97 -0.40 -2.49 16 13 C -0.16 -3.68 8.61 -39.28 -0.34 -4.02 16 14 C 0.14 3.23 5.55 -106.56 -0.59 2.64 16 15 C -0.45 -10.67 7.12 -37.89 -0.27 -10.94 16 16 H 0.08 1.97 6.66 -52.48 -0.35 1.62 16 17 C 0.08 1.78 5.17 -17.30 -0.09 1.69 16 18 N -0.78 -18.23 10.98 55.56 0.61 -17.62 16 19 Si 0.91 17.46 29.59 -169.99 -5.03 12.43 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 21 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 C 0.11 2.21 9.19 -17.12 -0.16 2.05 16 24 N -0.46 -8.54 9.51 -9.45 -0.09 -8.63 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.41 5.21 8.14 -40.82 -0.33 4.88 16 29 H 0.14 2.15 7.63 -52.49 -0.40 1.75 16 30 H 0.13 2.14 8.06 -52.49 -0.42 1.71 16 31 H 0.09 1.68 8.05 -52.48 -0.42 1.26 16 32 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 34 H 0.12 2.91 6.26 -52.49 -0.33 2.58 16 35 H 0.28 6.04 8.29 -40.82 -0.34 5.70 16 36 H 0.17 3.43 7.31 -52.49 -0.38 3.05 16 LS Contribution 314.57 15.07 4.74 4.74 Total: -1.00 -26.54 314.57 -8.43 -34.98 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -3.89 Total: 11.42 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -4.48 Total: -16.72 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.13 Total: -36.49 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.54 -8.43 -34.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239851721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.503 kcal (2) G-P(sol) polarization free energy of solvation -26.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds