Wall clock time and date at job start Tue Mar 31 2020 05:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34774 * 120.00263 * 2 1 4 4 O 1.21543 * 119.99808 * 0.02562 * 3 2 1 5 5 C 1.47978 * 120.00491 * 179.97438 * 3 2 1 6 6 C 1.39536 * 119.56697 * 180.02562 * 5 3 2 7 7 C 1.38181 * 119.21521 * 179.78986 * 6 5 3 8 8 C 1.40095 * 118.36250 * 0.43121 * 7 6 5 9 9 C 1.47725 * 120.47038 * 179.80544 * 8 7 6 10 10 C 1.39244 * 120.34014 * 309.69803 * 9 8 7 11 11 C 1.38065 * 119.97960 * 180.02562 * 10 9 8 12 12 C 1.38942 * 120.68260 * 359.97438 * 11 10 9 13 13 C 1.36436 * 120.70401 * 0.02562 * 12 11 10 14 14 C 1.40766 * 119.98668 * 359.97438 * 13 12 11 15 15 C 1.40815 * 120.32983 * 179.97438 * 14 13 12 16 16 H 1.08009 * 119.99905 * 153.03391 * 15 14 13 17 17 C 1.40158 * 120.00461 * 333.02818 * 15 14 13 18 18 N 1.30719 * 120.00118 * 344.52823 * 17 15 14 19 19 Si 1.86802 * 120.00395 * 164.52666 * 17 15 14 20 20 H 1.48502 * 109.46944 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47062 * 120.00190 * 19 17 15 22 22 H 1.48493 * 109.47158 * 240.00318 * 19 17 15 23 23 C 1.40019 * 119.06309 * 359.52818 * 8 7 6 24 24 N 1.31275 * 120.68733 * 0.27167 * 23 8 7 25 25 H 1.08995 * 109.47214 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46946 * 300.00206 * 1 2 3 27 27 H 1.08996 * 109.46822 * 59.99918 * 1 2 3 28 28 H 0.96998 * 119.99885 * 179.97438 * 2 1 3 29 29 H 1.07993 * 120.39288 * 0.02562 * 6 5 3 30 30 H 1.07998 * 120.82084 * 180.23618 * 7 6 5 31 31 H 1.08003 * 120.00482 * 0.04534 * 10 9 8 32 32 H 1.07997 * 119.65863 * 180.27507 * 11 10 9 33 33 H 1.08005 * 119.64723 * 179.97438 * 12 11 10 34 34 H 1.07993 * 120.00347 * 180.02562 * 13 12 11 35 35 H 0.96993 * 120.00349 * 179.97438 * 18 17 15 36 36 H 1.08000 * 119.65595 * 180.25079 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5313 2.2198 0.0005 5 6 3.6188 1.1672 0.0006 6 6 4.3072 2.3809 0.0011 7 6 5.6890 2.3725 0.0061 8 6 6.3470 1.1357 0.0011 9 6 7.8229 1.0724 0.0018 10 6 8.5591 1.8131 -0.9192 11 6 9.9382 1.7480 -0.9123 12 6 10.6056 0.9485 0.0075 13 6 9.9121 0.2112 0.9222 14 6 8.5052 0.2559 0.9410 15 6 7.7822 -0.5026 1.8816 16 1 6.8040 -0.1753 2.2020 17 6 8.3317 -1.6822 2.4020 18 7 9.3555 -2.2418 1.8127 19 14 7.6010 -2.4549 3.9378 20 1 6.4569 -1.6336 4.4088 21 1 7.1286 -3.8275 3.6246 22 1 8.6362 -2.5181 5.0006 23 6 5.5860 -0.0397 0.0014 24 7 4.2743 0.0115 0.0010 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9500 -0.8400 0.0004 29 1 3.7666 3.3157 0.0015 30 1 6.2480 3.2965 0.0104 31 1 8.0514 2.4387 -1.6385 32 1 10.5042 2.3281 -1.6260 33 1 11.6849 0.9097 -0.0024 34 1 10.4424 -0.4061 1.6322 35 1 9.7361 -3.0580 2.1731 36 1 6.0834 -0.9983 0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239851721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:39 Heat of formation + Delta-G solvation = -6.023871 kcal Electronic energy + Delta-G solvation = -20836.331490 eV Core-core repulsion = 17669.878891 eV Total energy + Delta-G solvation = -3166.452599 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.54593 -40.15970 -39.02141 -35.72301 -35.61405 -34.10454 -32.92304 -31.45981 -30.40886 -28.00232 -27.12770 -25.07901 -24.30429 -22.69659 -22.09801 -21.39595 -19.43113 -19.12825 -17.67481 -17.53935 -16.79645 -16.42094 -16.36820 -15.93447 -15.85214 -15.30915 -15.07771 -14.53348 -14.46178 -14.33563 -13.98214 -13.73348 -13.50836 -13.17093 -13.08278 -13.02504 -12.82974 -12.53990 -12.18116 -11.56419 -11.45127 -11.38139 -11.09565 -10.83692 -10.54967 -10.27018 -10.00027 -9.32778 -9.07931 -8.66047 -6.34501 -0.38583 0.34477 0.94131 1.09504 1.38423 1.49367 1.50885 1.77065 2.17743 2.18579 2.72513 2.94673 3.21239 3.68943 3.90240 4.01255 4.09352 4.19453 4.41570 4.46145 4.51570 4.62246 4.66764 4.83393 4.90543 4.93157 5.08877 5.11323 5.26678 5.30632 5.37757 5.47535 5.65892 5.71075 6.00704 6.07234 6.19272 6.32708 6.37393 6.65291 6.83693 6.88856 6.99582 7.13244 8.26946 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.005618 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.214529 B = 4982.547525 C = 6498.869843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.711 5.711 3 C 0.575 3.425 4 O -0.571 6.571 5 C 0.024 3.976 6 C -0.104 4.104 7 C -0.096 4.096 8 C -0.011 4.011 9 C -0.204 4.204 10 C -0.070 4.070 11 C -0.240 4.240 12 C -0.102 4.102 13 C -0.182 4.182 14 C 0.108 3.892 15 C -0.472 4.472 16 H 0.072 0.928 17 C 0.046 3.954 18 N -0.811 5.811 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.264 1.264 22 H -0.264 1.264 23 C 0.105 3.895 24 N -0.460 5.460 25 H 0.111 0.889 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.419 0.581 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.291 0.709 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.374 1.158 -1.855 8.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.362 5.362 3 C 0.361 3.639 4 O -0.450 6.450 5 C -0.113 4.113 6 C -0.125 4.125 7 C -0.121 4.121 8 C -0.014 4.014 9 C -0.206 4.206 10 C -0.088 4.088 11 C -0.259 4.259 12 C -0.120 4.120 13 C -0.202 4.202 14 C 0.106 3.894 15 C -0.501 4.501 16 H 0.090 0.910 17 C -0.171 4.171 18 N -0.436 5.436 19 Si 0.787 3.213 20 H -0.190 1.190 21 H -0.188 1.188 22 H -0.189 1.189 23 C -0.056 4.056 24 N -0.171 5.171 25 H 0.130 0.870 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.255 0.745 29 H 0.172 0.828 30 H 0.173 0.827 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.235 0.895 -1.850 9.461 hybrid contribution 0.884 -0.201 0.704 1.147 sum -8.351 0.694 -1.147 8.458 Atomic orbital electron populations 1.21793 0.77604 1.04567 1.02018 1.45696 1.08821 1.08611 1.73030 1.17923 0.85895 0.84243 0.75855 1.90720 1.69553 1.32353 1.52410 1.21109 0.94057 0.90388 1.05772 1.22048 0.94318 0.99133 0.97018 1.21922 0.93641 0.98276 0.98301 1.20056 0.94166 0.93814 0.93343 1.18682 0.90022 1.09573 1.02358 1.20908 0.94001 0.97004 0.96861 1.20678 0.94134 1.06713 1.04358 1.20810 0.98949 0.96528 0.95752 1.21057 0.94441 1.02793 1.01874 1.17805 0.92194 0.89290 0.90148 1.19643 1.03425 1.05874 1.21135 0.90957 1.26571 0.94326 0.96895 0.99308 1.69788 1.20246 1.16856 1.36692 0.85383 0.79229 0.78543 0.78095 1.18966 1.18843 1.18877 1.22935 0.87902 0.98970 0.95811 1.67388 1.10487 1.28322 1.10951 0.87027 0.92508 0.92296 0.74476 0.82787 0.82716 0.86420 0.86226 0.87203 0.87915 0.89835 0.82785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.52 10.70 127.77 1.37 2.88 16 2 N -0.71 -17.96 5.70 -487.33 -2.78 -20.73 16 3 C 0.57 18.68 7.80 86.83 0.68 19.36 16 4 O -0.57 -20.83 16.31 -3.85 -0.06 -20.90 16 5 C 0.02 0.82 6.75 41.88 0.28 1.10 16 6 C -0.10 -3.43 9.61 22.57 0.22 -3.21 16 7 C -0.10 -3.28 9.68 22.71 0.22 -3.06 16 8 C -0.01 -0.46 4.94 -19.89 -0.10 -0.56 16 9 C -0.20 -8.98 5.54 -19.61 -0.11 -9.09 16 10 C -0.07 -2.77 9.54 22.47 0.21 -2.56 16 11 C -0.24 -9.45 10.03 22.40 0.22 -9.23 16 12 C -0.10 -4.36 9.96 22.02 0.22 -4.14 16 13 C -0.18 -8.86 8.61 22.47 0.19 -8.66 16 14 C 0.11 5.31 5.55 -21.12 -0.12 5.19 16 15 C -0.47 -23.17 7.12 23.37 0.17 -23.00 16 16 H 0.07 3.58 6.66 -2.91 -0.02 3.56 16 17 C 0.05 2.15 5.17 85.32 0.44 2.59 16 18 N -0.81 -39.07 10.98 21.86 0.24 -38.83 16 19 Si 0.97 36.46 29.59 68.60 2.03 38.49 16 20 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 21 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 22 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 23 C 0.10 4.17 9.19 85.21 0.78 4.95 16 24 N -0.46 -16.72 9.51 -183.82 -1.75 -18.47 16 25 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.42 9.74 8.14 -92.71 -0.76 8.99 16 29 H 0.15 4.51 7.63 -2.91 -0.02 4.49 16 30 H 0.16 4.55 8.06 -2.91 -0.02 4.52 16 31 H 0.12 4.00 8.05 -2.91 -0.02 3.98 16 32 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.11 4.12 8.06 -2.91 -0.02 4.09 16 34 H 0.10 5.23 6.26 -2.91 -0.02 5.22 16 35 H 0.29 12.68 8.29 -92.71 -0.77 11.91 16 36 H 0.15 6.54 7.31 -2.91 -0.02 6.52 16 Total: -1.00 -57.31 314.57 2.73 -54.58 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: 0.36 Total: 33.28 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 4.68 Total: -27.43 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -4.29 Total: -78.04 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.06 Total: -20.90 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -57.31 2.73 -54.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239851721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.559 kcal (2) G-P(sol) polarization free energy of solvation -57.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds