Wall clock time and date at job start Tue Mar 31 2020 05:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00196 * 2 1 4 4 O 1.21550 * 119.99723 * 0.02562 * 3 2 1 5 5 C 1.47858 * 120.00061 * 179.97438 * 3 2 1 6 6 C 1.39673 * 120.08441 * 359.97438 * 5 3 2 7 7 C 1.38025 * 120.10555 * 180.02562 * 6 5 3 8 8 C 1.38142 * 120.28233 * 359.97438 * 7 6 5 9 9 C 1.39472 * 120.16123 * 0.02783 * 8 7 6 10 10 C 1.48336 * 120.05333 * 179.97438 * 9 8 7 11 11 C 1.39898 * 119.60350 * 4.72105 * 10 9 8 12 12 C 1.38695 * 119.46007 * 179.70350 * 11 10 9 13 13 C 1.38294 * 118.68711 * 0.56484 * 12 11 10 14 14 C 1.40676 * 119.18548 * 359.72526 * 13 12 11 15 15 C 1.41384 * 119.76649 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99852 * 359.97438 * 15 14 13 17 17 C 1.40013 * 119.99839 * 179.97438 * 15 14 13 18 18 N 1.30743 * 120.00269 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99586 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47325 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47023 * 120.00541 * 19 17 15 22 22 H 1.48499 * 109.46942 * 240.00122 * 19 17 15 23 23 N 1.32202 * 119.60680 * 184.99739 * 10 9 8 24 24 C 1.39145 * 119.89183 * 0.22360 * 9 8 7 25 25 H 1.09004 * 109.47051 * 299.99808 * 1 2 3 26 26 H 1.08998 * 109.47622 * 59.99829 * 1 2 3 27 27 H 1.09001 * 109.47649 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99574 * 179.97438 * 2 1 3 29 29 H 1.08004 * 119.94525 * 0.02562 * 6 5 3 30 30 H 1.07997 * 119.85984 * 179.97438 * 7 6 5 31 31 H 1.07995 * 119.92370 * 179.97438 * 8 7 6 32 32 H 1.08003 * 120.27021 * 0.02562 * 11 10 9 33 33 H 1.08004 * 120.65502 * 180.28335 * 12 11 10 34 34 H 1.08001 * 120.40438 * 179.70284 * 13 12 11 35 35 H 0.97005 * 119.99997 * 179.97438 * 18 17 15 36 36 H 1.08006 * 120.13888 * 179.74677 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2198 0.0005 5 6 3.6175 1.1671 0.0006 6 6 4.3176 -0.0415 0.0017 7 6 5.6979 -0.0420 0.0027 8 6 6.3949 1.1507 0.0022 9 6 5.7074 2.3642 0.0012 10 6 6.4583 3.6434 0.0012 11 6 7.8537 3.6257 -0.0979 12 6 8.5524 4.8238 -0.1038 13 6 7.8431 6.0064 0.0010 14 6 6.4410 5.9586 0.1040 15 6 5.7036 7.1601 0.2112 16 1 6.2170 8.1103 0.2142 17 6 4.3079 7.1182 0.3135 18 7 3.6863 5.9680 0.3094 19 14 3.3337 8.7059 0.4544 20 1 4.2656 9.8618 0.4353 21 1 2.3903 8.8108 -0.6876 22 1 2.5706 8.7070 1.7284 23 7 5.8014 4.7864 0.1003 24 6 4.3160 2.3729 0.0054 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9499 -0.8401 0.0004 29 1 3.7780 -0.9771 0.0017 30 1 6.2352 -0.9788 0.0040 31 1 7.4748 1.1435 0.0035 32 1 8.3822 2.6869 -0.1744 33 1 9.6294 4.8328 -0.1841 34 1 8.3595 6.9550 0.0040 35 1 2.7193 5.9390 0.3806 36 1 3.7796 3.3103 0.0087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240011812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:07 Heat of formation + Delta-G solvation = 22.854818 kcal Electronic energy + Delta-G solvation = -20885.423947 eV Core-core repulsion = 17720.223621 eV Total energy + Delta-G solvation = -3165.200325 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.84829 -38.55909 -37.38472 -34.52238 -33.69388 -31.92040 -31.02024 -30.24375 -28.82485 -26.88741 -25.55991 -23.43872 -22.62987 -21.23101 -20.72353 -19.78224 -17.96948 -17.12177 -15.94974 -15.78421 -15.39306 -15.02239 -14.59409 -14.49652 -14.36322 -13.54416 -13.43637 -13.19409 -13.07262 -12.70146 -12.57810 -12.33415 -12.11459 -11.78057 -11.19221 -11.18350 -11.04314 -10.79707 -10.69247 -10.37557 -9.89600 -9.67419 -9.48161 -9.08771 -8.90670 -8.52809 -8.09015 -7.63518 -7.28761 -6.40007 -4.52453 1.15584 1.67206 2.72898 2.94915 3.13271 3.17452 3.18760 3.31875 3.38646 3.97803 4.32374 4.83685 4.88849 5.04514 5.17161 5.20941 5.48039 5.48345 5.65491 5.76672 5.89739 5.91368 6.05983 6.19625 6.33956 6.42149 6.45126 6.66497 6.71356 6.76988 6.80473 7.13789 7.14457 7.31093 7.46808 7.55010 7.59999 7.69073 7.99911 8.21772 8.43655 8.65836 8.90132 10.02645 10.32503 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013406 B = 0.006259 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.056611 B = 4472.567415 C = 6540.427889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.740 5.740 3 C 0.558 3.442 4 O -0.523 6.523 5 C -0.153 4.153 6 C -0.099 4.099 7 C -0.139 4.139 8 C -0.086 4.086 9 C -0.024 4.024 10 C 0.172 3.828 11 C -0.303 4.303 12 C -0.059 4.059 13 C -0.272 4.272 14 C 0.255 3.745 15 C -0.429 4.429 16 H 0.085 0.915 17 C 0.068 3.932 18 N -0.709 5.709 19 Si 0.907 3.093 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.273 1.273 23 N -0.467 5.467 24 C -0.019 4.019 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.399 0.601 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.277 0.723 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.241 -12.844 -0.373 13.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.393 5.393 3 C 0.346 3.654 4 O -0.399 6.399 5 C -0.156 4.156 6 C -0.118 4.118 7 C -0.157 4.157 8 C -0.105 4.105 9 C -0.025 4.025 10 C 0.027 3.973 11 C -0.326 4.326 12 C -0.083 4.083 13 C -0.295 4.295 14 C 0.130 3.870 15 C -0.460 4.460 16 H 0.103 0.897 17 C -0.158 4.158 18 N -0.330 5.330 19 Si 0.731 3.269 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.198 1.198 23 N -0.179 5.179 24 C -0.039 4.039 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.233 0.767 29 H 0.134 0.866 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.853 -12.093 -0.290 12.695 hybrid contribution 0.803 0.135 -0.002 0.814 sum -3.050 -11.958 -0.293 12.344 Atomic orbital electron populations 1.21487 0.79772 1.01753 1.02404 1.45714 1.07490 1.08691 1.77433 1.18443 0.87592 0.83491 0.75878 1.90816 1.69845 1.30974 1.48291 1.19837 0.92174 0.94677 1.08957 1.21130 0.94605 0.96195 0.99871 1.20841 0.93749 0.97797 1.03334 1.21490 1.00332 0.91583 0.97133 1.18879 0.92680 0.92189 0.98715 1.19656 0.89531 0.91974 0.96114 1.21149 0.94338 0.96981 1.20176 1.20776 0.97540 0.92955 0.97043 1.21792 0.95797 0.96721 1.15149 1.18509 0.88450 0.91333 0.88691 1.19652 0.91293 0.92677 1.42346 0.89716 1.26052 0.98513 0.97403 0.93835 1.70010 1.09885 1.25467 1.27608 0.86283 0.79861 0.82080 0.78693 1.18499 1.19782 1.19810 1.68718 1.36674 0.95932 1.16606 1.21958 0.93638 0.98724 0.89536 0.92280 0.92296 0.90965 0.76691 0.86589 0.85928 0.85416 0.88456 0.88452 0.88233 0.91129 0.81398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 10.70 59.85 0.64 1.56 16 2 N -0.74 -9.05 5.66 -68.04 -0.39 -9.43 16 3 C 0.56 9.76 7.77 -12.32 -0.10 9.67 16 4 O -0.52 -11.45 16.34 5.32 0.09 -11.37 16 5 C -0.15 -2.71 5.87 -105.01 -0.62 -3.33 16 6 C -0.10 -1.35 9.54 -39.12 -0.37 -1.72 16 7 C -0.14 -1.90 10.02 -39.69 -0.40 -2.30 16 8 C -0.09 -1.44 9.41 -39.16 -0.37 -1.81 16 9 C -0.02 -0.50 5.87 -104.95 -0.62 -1.12 16 10 C 0.17 4.21 6.73 -82.93 -0.56 3.65 16 11 C -0.30 -6.75 9.47 -38.79 -0.37 -7.12 16 12 C -0.06 -1.32 10.15 -39.39 -0.40 -1.72 16 13 C -0.27 -6.67 9.83 -38.64 -0.38 -7.05 16 14 C 0.26 7.01 6.55 -85.01 -0.56 6.46 16 15 C -0.43 -11.53 9.14 -37.72 -0.34 -11.87 16 16 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 17 C 0.07 1.76 5.50 -17.35 -0.10 1.67 16 18 N -0.71 -19.24 11.15 55.55 0.62 -18.62 16 19 Si 0.91 19.13 29.56 -169.99 -5.02 14.10 16 20 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 N -0.47 -12.86 6.92 -7.67 -0.05 -12.91 16 24 C -0.02 -0.42 9.11 -38.83 -0.35 -0.77 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.40 3.53 6.86 -40.82 -0.28 3.25 16 29 H 0.12 1.10 6.39 -52.48 -0.34 0.76 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.13 1.91 6.18 -52.49 -0.32 1.59 16 32 H 0.10 1.85 6.19 -52.48 -0.32 1.52 16 33 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 34 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 35 H 0.28 7.06 8.29 -40.82 -0.34 6.72 16 36 H 0.17 4.29 6.81 -52.48 -0.36 3.93 16 LS Contribution 313.77 15.07 4.73 4.73 Total: -1.00 -32.23 313.77 -8.62 -40.85 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -3.70 Total: 8.46 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -4.88 Total: -15.81 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.18 Total: -40.96 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.23 -8.62 -40.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240011812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.701 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds