Wall clock time and date at job start Tue Mar 31 2020 05:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00196 * 2 1 4 4 O 1.21550 * 119.99723 * 0.02562 * 3 2 1 5 5 C 1.47858 * 120.00061 * 179.97438 * 3 2 1 6 6 C 1.39673 * 120.08441 * 359.97438 * 5 3 2 7 7 C 1.38025 * 120.10555 * 180.02562 * 6 5 3 8 8 C 1.38142 * 120.28233 * 359.97438 * 7 6 5 9 9 C 1.39472 * 120.16123 * 0.02783 * 8 7 6 10 10 C 1.48336 * 120.05333 * 179.97438 * 9 8 7 11 11 C 1.39898 * 119.60350 * 4.72105 * 10 9 8 12 12 C 1.38695 * 119.46007 * 179.70350 * 11 10 9 13 13 C 1.38294 * 118.68711 * 0.56484 * 12 11 10 14 14 C 1.40676 * 119.18548 * 359.72526 * 13 12 11 15 15 C 1.41384 * 119.76649 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99852 * 359.97438 * 15 14 13 17 17 C 1.40013 * 119.99839 * 179.97438 * 15 14 13 18 18 N 1.30743 * 120.00269 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99586 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47325 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47023 * 120.00541 * 19 17 15 22 22 H 1.48499 * 109.46942 * 240.00122 * 19 17 15 23 23 N 1.32202 * 119.60680 * 184.99739 * 10 9 8 24 24 C 1.39145 * 119.89183 * 0.22360 * 9 8 7 25 25 H 1.09004 * 109.47051 * 299.99808 * 1 2 3 26 26 H 1.08998 * 109.47622 * 59.99829 * 1 2 3 27 27 H 1.09001 * 109.47649 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99574 * 179.97438 * 2 1 3 29 29 H 1.08004 * 119.94525 * 0.02562 * 6 5 3 30 30 H 1.07997 * 119.85984 * 179.97438 * 7 6 5 31 31 H 1.07995 * 119.92370 * 179.97438 * 8 7 6 32 32 H 1.08003 * 120.27021 * 0.02562 * 11 10 9 33 33 H 1.08004 * 120.65502 * 180.28335 * 12 11 10 34 34 H 1.08001 * 120.40438 * 179.70284 * 13 12 11 35 35 H 0.97005 * 119.99997 * 179.97438 * 18 17 15 36 36 H 1.08006 * 120.13888 * 179.74677 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2198 0.0005 5 6 3.6175 1.1671 0.0006 6 6 4.3176 -0.0415 0.0017 7 6 5.6979 -0.0420 0.0027 8 6 6.3949 1.1507 0.0022 9 6 5.7074 2.3642 0.0012 10 6 6.4583 3.6434 0.0012 11 6 7.8537 3.6257 -0.0979 12 6 8.5524 4.8238 -0.1038 13 6 7.8431 6.0064 0.0010 14 6 6.4410 5.9586 0.1040 15 6 5.7036 7.1601 0.2112 16 1 6.2170 8.1103 0.2142 17 6 4.3079 7.1182 0.3135 18 7 3.6863 5.9680 0.3094 19 14 3.3337 8.7059 0.4544 20 1 4.2656 9.8618 0.4353 21 1 2.3903 8.8108 -0.6876 22 1 2.5706 8.7070 1.7284 23 7 5.8014 4.7864 0.1003 24 6 4.3160 2.3729 0.0054 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9499 -0.8401 0.0004 29 1 3.7780 -0.9771 0.0017 30 1 6.2352 -0.9788 0.0040 31 1 7.4748 1.1435 0.0035 32 1 8.3822 2.6869 -0.1744 33 1 9.6294 4.8328 -0.1841 34 1 8.3595 6.9550 0.0040 35 1 2.7193 5.9390 0.3806 36 1 3.7796 3.3103 0.0087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240011812.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:07 Heat of formation + Delta-G solvation = 1.007471 kcal Electronic energy + Delta-G solvation = -20886.371319 eV Core-core repulsion = 17720.223621 eV Total energy + Delta-G solvation = -3166.147697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.20167 -40.21635 -38.88861 -35.77186 -35.55621 -33.49135 -32.58658 -31.86722 -30.47592 -28.10657 -27.28921 -24.83621 -24.17773 -22.94312 -22.20507 -21.18460 -19.53809 -18.77251 -17.30015 -17.20439 -16.96112 -16.25292 -16.24148 -16.18866 -15.87573 -15.04326 -14.97602 -14.55387 -14.51320 -14.26652 -14.00458 -13.76104 -13.30008 -13.10900 -12.88457 -12.81295 -12.71516 -12.53914 -12.29028 -11.98159 -11.64984 -11.32526 -11.07415 -10.55286 -10.24258 -9.94770 -9.80352 -9.50451 -9.00001 -8.29669 -6.53351 -0.18917 0.21573 1.01527 1.25184 1.35150 1.48719 1.51744 1.92694 2.18951 2.21751 2.77718 3.08276 3.68967 3.77357 3.97273 4.00365 4.23593 4.33965 4.36764 4.48180 4.59827 4.60966 4.74237 4.81218 4.91188 4.93021 4.96996 5.13857 5.17294 5.35789 5.38373 5.44415 5.56283 5.62059 5.77752 5.86714 6.02053 6.18828 6.25724 6.54354 6.73573 6.93619 7.22827 8.15354 8.41911 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013406 B = 0.006259 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.056611 B = 4472.567415 C = 6540.427889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.713 5.713 3 C 0.550 3.450 4 O -0.585 6.585 5 C -0.165 4.165 6 C -0.071 4.071 7 C -0.120 4.120 8 C -0.078 4.078 9 C -0.062 4.062 10 C 0.146 3.854 11 C -0.295 4.295 12 C -0.057 4.057 13 C -0.295 4.295 14 C 0.220 3.780 15 C -0.469 4.469 16 H 0.090 0.910 17 C 0.021 3.979 18 N -0.749 5.749 19 Si 0.983 3.017 20 H -0.248 1.248 21 H -0.270 1.270 22 H -0.269 1.269 23 N -0.505 5.505 24 C -0.057 4.057 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.123 0.877 28 H 0.420 0.580 29 H 0.172 0.828 30 H 0.180 0.820 31 H 0.150 0.850 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.111 0.889 35 H 0.273 0.727 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 -16.965 -0.445 17.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.367 5.367 3 C 0.338 3.662 4 O -0.465 6.465 5 C -0.168 4.168 6 C -0.090 4.090 7 C -0.137 4.137 8 C -0.097 4.097 9 C -0.063 4.063 10 C 0.003 3.997 11 C -0.318 4.318 12 C -0.081 4.081 13 C -0.318 4.318 14 C 0.095 3.905 15 C -0.500 4.500 16 H 0.108 0.892 17 C -0.200 4.200 18 N -0.370 5.370 19 Si 0.804 3.196 20 H -0.171 1.171 21 H -0.195 1.195 22 H -0.194 1.194 23 N -0.218 5.218 24 C -0.077 4.077 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.142 0.858 28 H 0.258 0.742 29 H 0.190 0.810 30 H 0.197 0.803 31 H 0.168 0.832 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.129 0.871 35 H 0.084 0.916 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.636 -16.292 -0.365 16.508 hybrid contribution 0.517 1.120 0.001 1.234 sum -2.119 -15.172 -0.364 15.324 Atomic orbital electron populations 1.21719 0.78249 1.04684 1.01267 1.45533 1.08448 1.07818 1.74873 1.18650 0.87855 0.84109 0.75555 1.90790 1.70856 1.33487 1.51403 1.19935 0.92443 0.94965 1.09453 1.21704 0.95122 0.96283 0.95898 1.21456 0.93701 0.98590 0.99995 1.21777 1.01460 0.90783 0.95723 1.18938 0.92479 0.92650 1.02248 1.20437 0.91269 0.92613 0.95382 1.21632 0.93644 0.98800 1.17721 1.21263 0.99643 0.91987 0.95201 1.22000 0.95035 0.98486 1.16246 1.19033 0.90157 0.91928 0.89430 1.19980 0.92371 0.93048 1.44613 0.89175 1.26999 0.99238 1.00908 0.92879 1.70211 1.09613 1.27777 1.29432 0.85145 0.78141 0.77796 0.78557 1.17076 1.19514 1.19422 1.68713 1.38234 0.96956 1.17937 1.21630 0.94384 0.98544 0.93145 0.93540 0.93502 0.85837 0.74190 0.81033 0.80292 0.83228 0.84367 0.84156 0.87131 0.91646 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.56 10.70 127.77 1.37 2.92 16 2 N -0.71 -15.76 5.66 -487.46 -2.76 -18.52 16 3 C 0.55 19.52 7.77 86.79 0.67 20.19 16 4 O -0.58 -27.57 16.34 -3.87 -0.06 -27.64 16 5 C -0.16 -5.79 5.87 -20.12 -0.12 -5.91 16 6 C -0.07 -1.62 9.54 22.57 0.22 -1.40 16 7 C -0.12 -2.58 10.02 22.20 0.22 -2.36 16 8 C -0.08 -2.38 9.41 22.54 0.21 -2.16 16 9 C -0.06 -2.70 5.87 -20.07 -0.12 -2.81 16 10 C 0.15 7.45 6.73 42.18 0.28 7.73 16 11 C -0.30 -12.89 9.47 22.78 0.22 -12.67 16 12 C -0.06 -2.49 10.15 22.39 0.23 -2.26 16 13 C -0.30 -14.96 9.83 22.88 0.22 -14.74 16 14 C 0.22 12.91 6.55 40.25 0.26 13.17 16 15 C -0.47 -27.01 9.14 23.48 0.21 -26.79 16 16 H 0.09 4.83 7.85 -2.91 -0.02 4.80 16 17 C 0.02 1.19 5.50 85.29 0.47 1.66 16 18 N -0.75 -44.57 11.15 21.83 0.24 -44.32 16 19 Si 0.98 41.84 29.56 68.60 2.03 43.87 16 20 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 N -0.51 -29.91 6.92 -178.19 -1.23 -31.14 16 24 C -0.06 -2.63 9.11 22.75 0.21 -2.43 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 27 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.42 5.39 6.86 -92.71 -0.64 4.75 16 29 H 0.17 1.96 6.39 -2.91 -0.02 1.94 16 30 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 31 H 0.15 3.78 6.18 -2.91 -0.02 3.76 16 32 H 0.14 4.76 6.19 -2.91 -0.02 4.74 16 33 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 34 H 0.11 5.15 8.06 -2.91 -0.02 5.12 16 35 H 0.27 15.43 8.29 -92.70 -0.77 14.66 16 36 H 0.11 6.52 6.81 -2.91 -0.02 6.50 16 Total: -1.00 -82.96 313.77 3.27 -79.70 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.49 Total: 25.92 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 4.56 Total: -27.87 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -3.75 Total: -93.98 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.06 Total: -27.64 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -82.96 3.27 -79.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240011812.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.704 kcal (2) G-P(sol) polarization free energy of solvation -82.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds