Wall clock time and date at job start Tue Mar 31 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34776 * 119.99967 * 2 1 4 4 O 1.21552 * 119.99670 * 359.97438 * 3 2 1 5 5 C 1.47855 * 119.99973 * 179.97438 * 3 2 1 6 6 C 1.39660 * 120.08748 * 0.02562 * 5 3 2 7 7 C 1.38015 * 120.10381 * 180.02562 * 6 5 3 8 8 C 1.38157 * 120.27646 * 359.97438 * 7 6 5 9 9 C 1.39440 * 120.16527 * 359.95492 * 8 7 6 10 10 C 1.48377 * 120.04764 * 180.02562 * 9 8 7 11 11 C 1.38891 * 119.61566 * 4.97853 * 10 9 8 12 12 C 1.40850 * 118.76188 * 180.02562 * 11 10 9 13 13 C 1.41530 * 120.98385 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00250 * 330.86474 * 13 12 11 15 15 C 1.40048 * 119.99920 * 150.86777 * 13 12 11 16 16 N 1.30731 * 119.99899 * 161.62372 * 15 13 12 17 17 Si 1.86805 * 119.99931 * 341.61677 * 15 13 12 18 18 H 1.48499 * 109.47031 * 95.39505 * 17 15 13 19 19 H 1.48502 * 109.46992 * 215.39464 * 17 15 13 20 20 H 1.48504 * 109.47110 * 335.39565 * 17 15 13 21 21 C 1.41138 * 118.03034 * 359.97438 * 12 11 10 22 22 C 1.37748 * 119.06567 * 0.02581 * 21 12 11 23 23 N 1.31917 * 121.15557 * 359.97438 * 22 21 12 24 24 C 1.39109 * 119.89649 * 0.27962 * 9 8 7 25 25 H 1.09001 * 109.46998 * 299.99833 * 1 2 3 26 26 H 1.08996 * 109.46968 * 60.00142 * 1 2 3 27 27 H 1.08994 * 109.46909 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99974 * 179.97438 * 2 1 3 29 29 H 1.08008 * 119.94542 * 359.97438 * 6 5 3 30 30 H 1.08006 * 119.86334 * 179.97438 * 7 6 5 31 31 H 1.07999 * 119.92140 * 179.97438 * 8 7 6 32 32 H 1.08002 * 120.61944 * 359.97438 * 11 10 9 33 33 H 0.97002 * 119.99704 * 180.02562 * 16 15 13 34 34 H 1.07991 * 120.46640 * 179.97438 * 21 12 11 35 35 H 1.07999 * 119.41785 * 179.97438 * 22 21 12 36 36 H 1.07997 * 120.13563 * 179.72281 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5311 2.2198 -0.0005 5 6 3.6175 1.1672 0.0006 6 6 4.3177 -0.0412 0.0006 7 6 5.6978 -0.0416 0.0016 8 6 6.3947 1.1513 0.0022 9 6 5.7072 2.3644 0.0007 10 6 6.4583 3.6441 0.0007 11 6 7.8432 3.6271 -0.1026 12 6 8.5381 4.8522 -0.1002 13 6 9.9492 4.8897 -0.2025 14 1 10.5400 4.0683 0.1751 15 6 10.5794 5.9920 -0.7934 16 7 11.8502 6.2110 -0.5786 17 14 9.6042 7.1491 -1.8886 18 1 9.1318 8.3074 -1.0883 19 1 10.4702 7.6316 -2.9943 20 1 8.4353 6.4283 -2.4537 21 6 7.7855 6.0414 0.0072 22 6 6.4140 5.9588 0.1051 23 7 5.7984 4.7921 0.0995 24 6 4.3161 2.3731 0.0046 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.9501 -0.8400 0.0004 29 1 3.7782 -0.9769 0.0006 30 1 6.2353 -0.9784 0.0021 31 1 7.4747 1.1443 0.0034 32 1 8.3774 2.6918 -0.1824 33 1 12.2866 6.9747 -0.9876 34 1 8.2781 7.0024 0.0133 35 1 5.8326 6.8652 0.1880 36 1 3.7797 3.3104 0.0080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240012777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:10 Heat of formation + Delta-G solvation = 11.784596 kcal Electronic energy + Delta-G solvation = -20362.204524 eV Core-core repulsion = 17196.524158 eV Total energy + Delta-G solvation = -3165.680366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.13183 -38.95128 -37.72508 -34.77275 -34.15667 -32.26088 -31.56775 -30.84593 -28.78244 -26.98813 -25.99843 -23.79679 -22.77917 -21.82700 -20.63406 -20.18363 -18.38844 -17.16962 -16.26472 -16.09453 -15.68437 -15.26790 -15.09311 -14.82684 -14.34062 -13.91237 -13.74720 -13.49017 -13.33940 -13.02714 -12.91399 -12.87724 -12.48330 -12.13474 -11.62312 -11.44073 -11.27720 -10.96032 -10.76130 -10.68090 -9.96376 -9.90514 -9.48719 -9.32893 -9.14263 -8.78792 -8.35935 -8.20507 -7.50541 -7.13975 -4.79266 0.90151 1.35729 2.41411 2.54520 3.00024 3.06927 3.09078 3.12110 3.23242 3.84743 4.03173 4.53201 4.65429 4.79378 4.92944 5.03002 5.17496 5.30019 5.33201 5.45859 5.58074 5.61304 5.79306 5.89994 6.09929 6.21904 6.30349 6.37658 6.43002 6.46468 6.53378 6.80392 6.84478 7.00509 7.09105 7.15767 7.35610 7.55809 7.82301 8.12954 8.16178 8.35295 8.57279 9.24761 9.87012 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.033154 B = 0.003705 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.328212 B = 7556.517561 C = 8180.089347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.737 5.737 3 C 0.561 3.439 4 O -0.533 6.533 5 C -0.150 4.150 6 C -0.096 4.096 7 C -0.131 4.131 8 C -0.081 4.081 9 C -0.024 4.024 10 C 0.157 3.843 11 C -0.235 4.235 12 C 0.108 3.892 13 C -0.438 4.438 14 H 0.095 0.905 15 C 0.087 3.913 16 N -0.795 5.795 17 Si 0.913 3.087 18 H -0.267 1.267 19 H -0.288 1.288 20 H -0.245 1.245 21 C -0.284 4.284 22 C 0.122 3.878 23 N -0.562 5.562 24 C -0.028 4.028 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.400 0.600 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.289 0.711 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.271 -12.301 -0.327 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.390 5.390 3 C 0.349 3.651 4 O -0.410 6.410 5 C -0.153 4.153 6 C -0.115 4.115 7 C -0.149 4.149 8 C -0.100 4.100 9 C -0.025 4.025 10 C 0.025 3.975 11 C -0.258 4.258 12 C 0.100 3.900 13 C -0.468 4.468 14 H 0.113 0.887 15 C -0.134 4.134 16 N -0.418 5.418 17 Si 0.739 3.261 18 H -0.192 1.192 19 H -0.215 1.215 20 H -0.168 1.168 21 C -0.307 4.307 22 C -0.033 4.033 23 N -0.277 5.277 24 C -0.047 4.047 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.235 0.765 29 H 0.137 0.863 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.131 0.869 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.147 0.853 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.397 -11.447 -0.275 17.624 hybrid contribution 1.063 0.206 -0.499 1.193 sum -12.334 -11.241 -0.774 16.706 Atomic orbital electron populations 1.21522 0.79513 1.02034 1.02457 1.45713 1.07682 1.08706 1.76884 1.18403 0.87489 0.83530 0.75697 1.90783 1.69979 1.31157 1.49072 1.19779 0.92147 0.94636 1.08715 1.21166 0.94662 0.96266 0.99420 1.20935 0.93714 0.98066 1.02167 1.21574 1.00873 0.91382 0.96214 1.18784 0.92482 0.92169 0.99068 1.19139 0.90154 0.90421 0.97740 1.21880 0.92997 0.98277 1.12625 1.17856 0.93677 0.90766 0.87664 1.19507 0.89892 1.04191 1.33210 0.88702 1.26197 0.95088 0.96808 0.95350 1.69641 1.11809 1.26295 1.34094 0.86272 0.80355 0.80096 0.79391 1.19238 1.21480 1.16845 1.21985 0.95201 0.98515 1.14998 1.21913 0.91848 0.94465 0.95025 1.67349 1.40199 0.97444 1.22706 1.21481 0.93286 0.97834 0.92124 0.92176 0.92188 0.90741 0.76476 0.86253 0.85430 0.84782 0.86918 0.90040 0.87306 0.85312 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 10.70 59.85 0.64 1.36 16 2 N -0.74 -7.36 5.66 -68.04 -0.39 -7.75 16 3 C 0.56 8.23 7.77 -12.32 -0.10 8.14 16 4 O -0.53 -9.94 16.34 5.32 0.09 -9.85 16 5 C -0.15 -2.22 5.87 -105.01 -0.62 -2.84 16 6 C -0.10 -1.11 9.54 -39.13 -0.37 -1.48 16 7 C -0.13 -1.57 10.02 -39.69 -0.40 -1.97 16 8 C -0.08 -1.24 9.41 -39.16 -0.37 -1.61 16 9 C -0.02 -0.45 5.87 -104.95 -0.62 -1.06 16 10 C 0.16 3.46 6.72 -83.04 -0.56 2.90 16 11 C -0.24 -5.34 9.24 -38.35 -0.35 -5.70 16 12 C 0.11 2.68 5.13 -106.55 -0.55 2.13 16 13 C -0.44 -11.33 9.63 -37.65 -0.36 -11.70 16 14 H 0.10 2.53 8.06 -52.49 -0.42 2.11 16 15 C 0.09 2.19 5.42 -17.34 -0.09 2.09 16 16 N -0.79 -20.21 13.92 55.55 0.77 -19.43 16 17 Si 0.91 20.10 24.54 -169.99 -4.17 15.93 16 18 H -0.27 -5.66 6.70 56.52 0.38 -5.28 16 19 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.25 -5.64 6.85 56.52 0.39 -5.25 16 21 C -0.28 -6.75 7.29 -38.66 -0.28 -7.03 16 22 C 0.12 2.74 11.15 -17.69 -0.20 2.54 16 23 N -0.56 -12.95 9.40 -9.94 -0.09 -13.04 16 24 C -0.03 -0.50 9.11 -38.84 -0.35 -0.86 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.40 2.73 6.85 -40.82 -0.28 2.45 16 29 H 0.12 0.89 6.39 -52.48 -0.34 0.56 16 30 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.13 1.92 6.19 -52.49 -0.32 1.59 16 32 H 0.11 2.30 6.20 -52.49 -0.33 1.98 16 33 H 0.29 6.62 8.29 -40.82 -0.34 6.28 16 34 H 0.11 2.52 4.76 -52.49 -0.25 2.27 16 35 H 0.13 2.48 8.06 -52.49 -0.42 2.05 16 36 H 0.15 2.95 7.12 -52.49 -0.37 2.58 16 LS Contribution 307.81 15.07 4.64 4.64 Total: -1.00 -30.77 307.81 -7.32 -38.09 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -3.60 Total: 6.49 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -4.58 Total: -15.08 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.29 Total: -40.22 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.17 Total: 15.93 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.77 -7.32 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240012777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.876 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds