Wall clock time and date at job start Tue Mar 31 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34771 * 120.00130 * 2 1 4 4 O 1.21546 * 120.00281 * 359.97438 * 3 2 1 5 5 C 1.47864 * 119.99678 * 179.97438 * 3 2 1 6 6 C 1.39658 * 120.08883 * 359.97438 * 5 3 2 7 7 C 1.38021 * 120.09457 * 180.02562 * 6 5 3 8 8 C 1.38160 * 120.27327 * 359.73791 * 7 6 5 9 9 C 1.39398 * 120.17138 * 0.51673 * 8 7 6 10 10 C 1.48433 * 120.05008 * 179.76345 * 9 8 7 11 11 C 1.39700 * 120.41159 * 179.44342 * 10 9 8 12 12 N 1.31910 * 121.15274 * 180.27157 * 11 10 9 13 13 C 1.31525 * 122.11734 * 0.02562 * 12 11 10 14 14 C 1.40766 * 120.66839 * 359.97438 * 13 12 11 15 15 C 1.41435 * 120.60783 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99602 * 335.73661 * 15 14 13 17 17 C 1.39935 * 120.00090 * 155.74345 * 15 14 13 18 18 N 1.30833 * 119.99766 * 343.63895 * 17 15 14 19 19 Si 1.86797 * 120.00113 * 163.64787 * 17 15 14 20 20 H 1.48495 * 109.47381 * 89.99673 * 19 17 15 21 21 H 1.48503 * 109.46945 * 209.99823 * 19 17 15 22 22 H 1.48506 * 109.47119 * 329.99356 * 19 17 15 23 23 C 1.39134 * 120.40881 * 359.72096 * 10 9 8 24 24 C 1.39091 * 119.90536 * 359.48441 * 9 8 7 25 25 H 1.08994 * 109.47796 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47231 * 300.00823 * 1 2 3 27 27 H 1.09002 * 109.46719 * 60.00023 * 1 2 3 28 28 H 0.97003 * 119.99331 * 179.97438 * 2 1 3 29 29 H 1.07999 * 119.94951 * 0.03775 * 6 5 3 30 30 H 1.08000 * 119.85684 * 180.02562 * 7 6 5 31 31 H 1.08002 * 119.91289 * 180.27599 * 8 7 6 32 32 H 1.08000 * 119.42561 * 0.25579 * 11 10 9 33 33 H 1.08002 * 119.66719 * 179.97438 * 13 12 11 34 34 H 0.97001 * 119.99570 * 180.02562 * 18 17 15 35 35 H 1.07997 * 120.94869 * 359.75053 * 23 10 9 36 36 H 1.07998 * 120.14246 * 180.27025 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5313 2.2198 -0.0005 5 6 3.6175 1.1670 0.0006 6 6 4.3176 -0.0414 0.0017 7 6 5.6978 -0.0417 0.0027 8 6 6.3945 1.1514 -0.0027 9 6 5.7072 2.3641 0.0015 10 6 6.4585 3.6443 0.0009 11 6 5.7773 4.8640 -0.0065 12 7 6.4302 6.0102 -0.0125 13 6 7.7442 6.0664 -0.0122 14 6 8.5134 4.8875 -0.0049 15 6 9.9264 4.9495 -0.0052 16 1 10.4285 5.8227 -0.3949 17 6 10.6738 3.8794 0.4993 18 7 10.0985 2.9769 1.2518 19 14 12.4929 3.7396 0.0985 20 1 13.2838 4.4554 1.1314 21 1 12.8865 2.3078 0.0776 22 1 12.7544 4.3442 -1.2325 23 6 7.8498 3.6444 0.0020 24 6 4.3163 2.3729 0.0004 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.9499 -0.8401 0.0004 29 1 3.7782 -0.9770 0.0015 30 1 6.2353 -0.9784 0.0031 31 1 7.4745 1.1444 -0.0064 32 1 4.6973 4.8686 -0.0077 33 1 8.2382 7.0268 -0.0177 34 1 10.6167 2.2354 1.6018 35 1 8.4052 2.7182 0.0073 36 1 3.7799 3.3103 -0.0007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240015871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:20 Heat of formation + Delta-G solvation = 8.587644 kcal Electronic energy + Delta-G solvation = -20509.758320 eV Core-core repulsion = 17343.939323 eV Total energy + Delta-G solvation = -3165.818996 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.08469 -38.77671 -37.59584 -34.74818 -34.17310 -32.55228 -31.07986 -30.37644 -28.57350 -26.90518 -25.72847 -23.61998 -22.72178 -21.69127 -20.73047 -19.93021 -18.07361 -17.11164 -16.35701 -16.00211 -15.52633 -15.23937 -15.01544 -14.83897 -14.54474 -13.78590 -13.51575 -13.32097 -13.23225 -12.83730 -12.68519 -12.47309 -12.05541 -12.01813 -11.68926 -11.39902 -11.29004 -11.01448 -10.81424 -10.61461 -10.06053 -9.83033 -9.48126 -9.38745 -9.26250 -8.71119 -8.19144 -7.94797 -7.34433 -6.92326 -4.58101 1.01802 1.42758 2.56028 2.77285 2.97052 3.00980 3.12557 3.12679 3.18722 3.78874 4.16489 4.56277 4.70294 4.92038 5.06322 5.11951 5.32291 5.38982 5.57925 5.58497 5.63384 5.67759 5.95597 6.03603 6.14505 6.24826 6.45733 6.48712 6.55203 6.64674 6.71630 6.96141 7.04016 7.09509 7.21301 7.38598 7.59024 7.75250 7.82106 8.18554 8.31921 8.57885 8.60843 9.54339 9.97639 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026730 B = 0.004000 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.242129 B = 6997.589286 C = 7961.693935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.737 5.737 3 C 0.561 3.439 4 O -0.536 6.536 5 C -0.142 4.142 6 C -0.106 4.106 7 C -0.126 4.126 8 C -0.086 4.086 9 C -0.013 4.013 10 C -0.098 4.098 11 C -0.020 4.020 12 N -0.469 5.469 13 C -0.013 4.013 14 C 0.060 3.940 15 C -0.449 4.449 16 H 0.084 0.916 17 C 0.074 3.926 18 N -0.793 5.793 19 Si 0.913 3.087 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.114 4.114 24 C -0.058 4.058 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.401 0.599 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.284 0.716 35 H 0.134 0.866 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.048 -11.884 -1.672 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.389 5.389 3 C 0.350 3.650 4 O -0.413 6.413 5 C -0.145 4.145 6 C -0.124 4.124 7 C -0.144 4.144 8 C -0.104 4.104 9 C -0.014 4.014 10 C -0.100 4.100 11 C -0.178 4.178 12 N -0.176 5.176 13 C -0.174 4.174 14 C 0.056 3.944 15 C -0.478 4.478 16 H 0.102 0.898 17 C -0.144 4.144 18 N -0.418 5.418 19 Si 0.736 3.264 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.139 4.139 24 C -0.077 4.077 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.236 0.764 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.153 0.847 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.095 0.905 35 H 0.152 0.848 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.949 -10.566 -1.533 13.931 hybrid contribution 1.566 -1.484 0.019 2.157 sum -7.384 -12.050 -1.514 14.213 Atomic orbital electron populations 1.21522 0.79542 1.02028 1.02442 1.45712 1.07670 1.08753 1.76799 1.18426 0.87530 0.83506 0.75586 1.90768 1.70054 1.31178 1.49309 1.19687 0.91920 0.94612 1.08306 1.21097 0.94622 0.96142 1.00588 1.20965 0.93694 0.98153 1.01557 1.21626 1.01088 0.91465 0.96264 1.18969 0.92182 0.93393 0.96838 1.19413 0.94290 0.91739 1.04598 1.21858 0.98009 0.87238 1.10660 1.66973 1.10884 1.29351 1.10370 1.22603 0.88758 0.97300 1.08754 1.18470 0.94491 0.91653 0.89795 1.19555 0.90738 1.02495 1.35053 0.89771 1.25969 1.01594 0.94486 0.92360 1.69779 1.38872 1.10689 1.22414 0.86230 0.81356 0.78446 0.80325 1.19294 1.19958 1.18289 1.21834 0.91061 0.99302 1.01712 1.21378 0.93301 0.97566 0.95466 0.90755 0.92187 0.92186 0.76433 0.86416 0.85704 0.84748 0.85810 0.85453 0.90522 0.84837 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.70 59.85 0.64 1.39 16 2 N -0.74 -7.69 5.66 -68.04 -0.39 -8.08 16 3 C 0.56 8.43 7.77 -12.32 -0.10 8.34 16 4 O -0.54 -10.02 16.34 5.33 0.09 -9.93 16 5 C -0.14 -2.19 5.87 -105.01 -0.62 -2.81 16 6 C -0.11 -1.33 9.54 -39.13 -0.37 -1.70 16 7 C -0.13 -1.71 10.02 -39.69 -0.40 -2.10 16 8 C -0.09 -1.48 9.43 -39.18 -0.37 -1.85 16 9 C -0.01 -0.25 5.87 -104.95 -0.62 -0.87 16 10 C -0.10 -2.25 5.88 -104.82 -0.62 -2.87 16 11 C -0.02 -0.47 10.60 -16.97 -0.18 -0.65 16 12 N -0.47 -11.72 10.32 -12.29 -0.13 -11.85 16 13 C -0.01 -0.33 10.96 -16.73 -0.18 -0.51 16 14 C 0.06 1.55 5.59 -106.71 -0.60 0.95 16 15 C -0.45 -11.18 9.09 -37.73 -0.34 -11.52 16 16 H 0.08 1.99 7.90 -52.48 -0.41 1.58 16 17 C 0.07 1.73 5.20 -17.34 -0.09 1.64 16 18 N -0.79 -18.94 10.90 55.55 0.61 -18.33 16 19 Si 0.91 17.43 29.59 -169.99 -5.03 12.40 16 20 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 23 C -0.11 -2.80 8.16 -38.24 -0.31 -3.11 16 24 C -0.06 -1.06 8.98 -38.84 -0.35 -1.41 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.40 2.97 6.86 -40.82 -0.28 2.69 16 29 H 0.12 1.00 6.39 -52.49 -0.34 0.67 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.13 2.37 6.25 -52.49 -0.33 2.04 16 32 H 0.12 2.66 6.20 -52.49 -0.33 2.34 16 33 H 0.13 2.93 8.06 -52.49 -0.42 2.51 16 34 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 35 H 0.13 3.23 4.44 -52.49 -0.23 3.00 16 36 H 0.14 2.59 5.80 -52.49 -0.30 2.29 16 LS Contribution 310.45 15.07 4.68 4.68 Total: -1.00 -29.98 310.45 -8.14 -38.12 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -3.47 Total: 10.07 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -4.50 Total: -17.08 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.09 Total: -38.26 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.98 -8.14 -38.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240015871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.707 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds