Wall clock time and date at job start Tue Mar 31 2020 05:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99371 * 2 1 4 4 O 1.21567 * 120.00304 * 359.97438 * 3 2 1 5 5 C 1.47764 * 119.99633 * 179.97438 * 3 2 1 6 6 C 1.39746 * 119.99844 * 179.97438 * 5 3 2 7 7 C 1.37613 * 119.99556 * 180.02562 * 6 5 3 8 8 C 1.39733 * 120.00439 * 359.97134 * 7 6 5 9 9 C 1.47897 * 120.00198 * 180.02562 * 8 7 6 10 10 C 1.39912 * 119.45276 * 179.97438 * 9 8 7 11 11 C 1.36611 * 119.47004 * 180.02562 * 10 9 8 12 12 C 1.41318 * 118.40592 * 0.25030 * 11 10 9 13 13 C 1.41003 * 120.55216 * 179.74649 * 12 11 10 14 14 H 1.07998 * 119.99705 * 155.67306 * 13 12 11 15 15 C 1.40104 * 119.99927 * 335.67186 * 13 12 11 16 16 N 1.30731 * 120.00415 * 343.28856 * 15 13 12 17 17 Si 1.86803 * 119.99706 * 163.28663 * 15 13 12 18 18 H 1.48502 * 109.47269 * 60.00141 * 17 15 13 19 19 H 1.48501 * 109.47283 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47160 * 299.99945 * 17 15 13 21 21 C 1.41005 * 118.88819 * 359.51126 * 12 11 10 22 22 N 1.31211 * 120.40771 * 0.50089 * 21 12 11 23 23 C 1.39736 * 119.99926 * 0.30001 * 8 7 6 24 24 C 1.37620 * 120.00065 * 359.44933 * 23 8 7 25 25 H 1.09005 * 109.46986 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47751 * 299.99969 * 1 2 3 27 27 H 1.09002 * 109.47334 * 60.00959 * 1 2 3 28 28 H 0.96993 * 120.00236 * 179.97438 * 2 1 3 29 29 H 1.07998 * 119.99552 * 359.97438 * 6 5 3 30 30 H 1.08000 * 119.99690 * 179.97438 * 7 6 5 31 31 H 1.08004 * 120.26535 * 0.02562 * 10 9 8 32 32 H 1.08001 * 120.80020 * 179.97438 * 11 10 9 33 33 H 0.97003 * 120.00508 * 180.02562 * 16 15 13 34 34 H 1.08004 * 119.79592 * 180.24081 * 21 12 11 35 35 H 1.08000 * 119.99751 * 179.69563 * 23 8 7 36 36 H 1.08000 * 120.00292 * 180.27425 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1387 1.1673 0.0000 4 8 1.5309 2.2201 -0.0005 5 6 3.6164 1.1674 0.0006 6 6 4.3150 2.3776 0.0000 7 6 5.6912 2.3776 0.0000 8 6 6.3899 1.1676 0.0012 9 6 7.8689 1.1676 0.0018 10 6 8.5569 -0.0506 0.0034 11 6 9.9230 -0.0510 0.0045 12 6 10.5956 1.1918 0.0093 13 6 12.0046 1.2443 0.0159 14 1 12.5143 2.1165 -0.3659 15 6 12.7434 0.1648 0.5178 16 7 12.1607 -0.7341 1.2671 17 14 14.5612 0.0100 0.1162 18 1 15.2834 1.2050 0.6218 19 1 15.1087 -1.2099 0.7621 20 1 14.7364 -0.0885 -1.3551 21 6 9.8341 2.3785 0.0022 22 7 8.5230 2.3263 0.0013 23 6 5.6913 -0.0426 -0.0040 24 6 4.3151 -0.0428 0.0012 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 1.9500 -0.8400 0.0004 29 1 3.7749 3.3129 -0.0012 30 1 6.2311 3.3130 -0.0008 31 1 8.0123 -0.9833 0.0039 32 1 10.4758 -0.9788 0.0062 33 1 12.6723 -1.4813 1.6149 34 1 10.3330 3.3364 0.0018 35 1 6.2314 -0.9779 -0.0081 36 1 3.7752 -0.9781 0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240564778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:12 Heat of formation + Delta-G solvation = 6.490981 kcal Electronic energy + Delta-G solvation = -20052.205208 eV Core-core repulsion = 16886.295294 eV Total energy + Delta-G solvation = -3165.909914 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.93670 -38.79863 -37.49456 -34.66653 -34.43682 -31.88929 -31.14148 -30.36801 -29.40408 -27.11511 -25.52599 -23.30509 -22.66388 -21.24922 -20.91010 -20.04680 -18.09343 -17.63308 -16.28469 -15.98376 -15.56818 -15.16707 -14.89694 -14.68167 -14.08957 -13.73638 -13.59378 -13.26109 -13.18823 -12.82317 -12.79553 -12.41953 -12.24837 -11.92095 -11.80750 -11.49530 -11.45391 -11.02537 -10.78767 -10.65572 -10.05496 -9.84186 -9.66837 -9.23450 -8.81883 -8.63070 -8.48025 -8.21714 -7.45138 -7.12720 -4.69750 1.01076 1.81297 2.40938 2.83666 2.86781 2.88304 2.92313 3.22642 3.29807 3.62933 4.15861 4.52760 4.81915 5.03019 5.11946 5.26866 5.34870 5.40563 5.50793 5.62270 5.79728 5.81476 5.96113 6.15601 6.31368 6.38153 6.46859 6.55755 6.59779 6.68059 6.73022 6.85390 7.03003 7.15568 7.28272 7.46932 7.55498 7.63154 7.74412 8.17230 8.27123 8.35438 8.46536 9.42001 9.72656 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.051091 B = 0.002954 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.909542 B = 9475.661294 C = 9946.941074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.738 5.738 3 C 0.564 3.436 4 O -0.548 6.548 5 C -0.182 4.182 6 C -0.053 4.053 7 C -0.127 4.127 8 C 0.056 3.944 9 C -0.025 4.025 10 C -0.114 4.114 11 C -0.148 4.148 12 C 0.071 3.929 13 C -0.425 4.425 14 H 0.089 0.911 15 C 0.070 3.930 16 N -0.770 5.770 17 Si 0.919 3.081 18 H -0.260 1.260 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.014 4.014 22 N -0.442 5.442 23 C -0.148 4.148 24 C -0.078 4.078 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.401 0.599 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.290 0.710 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.771 -4.478 -1.541 10.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.391 5.391 3 C 0.354 3.646 4 O -0.426 6.426 5 C -0.185 4.185 6 C -0.072 4.072 7 C -0.146 4.146 8 C 0.055 3.945 9 C -0.157 4.157 10 C -0.135 4.135 11 C -0.173 4.173 12 C 0.066 3.934 13 C -0.453 4.453 14 H 0.107 0.893 15 C -0.151 4.151 16 N -0.393 5.393 17 Si 0.742 3.258 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.184 1.184 21 C -0.181 4.181 22 N -0.149 5.149 23 C -0.167 4.167 24 C -0.097 4.097 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.236 0.764 29 H 0.145 0.855 30 H 0.153 0.847 31 H 0.121 0.879 32 H 0.146 0.854 33 H 0.101 0.899 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.694 -3.217 -1.385 11.253 hybrid contribution 1.581 -1.530 -0.003 2.200 sum -9.113 -4.746 -1.388 10.369 Atomic orbital electron populations 1.21495 0.79793 1.01938 1.02241 1.45726 1.07542 1.08908 1.76917 1.18448 0.87678 0.83307 0.75169 1.90730 1.70274 1.31292 1.50337 1.19622 0.91545 0.94765 1.12576 1.21105 0.93884 0.97014 0.95192 1.21256 0.92823 0.98835 1.01699 1.18937 0.91967 0.92521 0.91058 1.18744 0.90672 0.89257 1.17043 1.21317 0.95284 0.96770 1.00095 1.21341 0.92581 0.98872 1.04477 1.18660 0.94352 0.92241 0.88192 1.19751 0.91221 1.01881 1.32456 0.89260 1.26153 1.02274 0.94329 0.92385 1.69737 1.39454 1.09671 1.20392 0.86167 0.80350 0.79019 0.80278 1.18456 1.19937 1.18362 1.22489 0.88421 0.97145 1.10038 1.66898 1.10839 1.28733 1.08443 1.21096 0.93366 0.97990 1.04290 1.20961 0.94279 0.96081 0.98358 0.90838 0.92341 0.92336 0.76417 0.85466 0.84665 0.87918 0.85441 0.89888 0.85112 0.85554 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.70 59.85 0.64 1.42 16 2 N -0.74 -8.05 5.66 -68.07 -0.39 -8.43 16 3 C 0.56 8.53 7.77 -12.37 -0.10 8.44 16 4 O -0.55 -10.05 16.33 5.31 0.09 -9.96 16 5 C -0.18 -2.83 5.88 -104.88 -0.62 -3.45 16 6 C -0.05 -0.90 9.58 -39.25 -0.38 -1.27 16 7 C -0.13 -2.35 9.55 -39.25 -0.38 -2.72 16 8 C 0.06 1.10 5.88 -104.82 -0.62 0.48 16 9 C -0.02 -0.56 6.74 -82.76 -0.56 -1.11 16 10 C -0.11 -2.52 9.38 -39.54 -0.37 -2.89 16 11 C -0.15 -3.55 8.74 -39.00 -0.34 -3.89 16 12 C 0.07 1.73 5.59 -106.63 -0.60 1.14 16 13 C -0.42 -10.03 9.07 -37.84 -0.34 -10.38 16 14 H 0.09 1.97 7.90 -52.49 -0.41 1.56 16 15 C 0.07 1.57 5.19 -17.32 -0.09 1.48 16 16 N -0.77 -17.74 10.90 55.56 0.61 -17.13 16 17 Si 0.92 16.46 29.59 -169.99 -5.03 11.43 16 18 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 19 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 20 H -0.26 -4.64 7.11 56.52 0.40 -4.23 16 21 C -0.01 -0.33 10.97 -16.77 -0.18 -0.52 16 22 N -0.44 -10.44 9.37 -9.11 -0.09 -10.52 16 23 C -0.15 -2.42 9.40 -39.25 -0.37 -2.79 16 24 C -0.08 -1.09 9.52 -39.25 -0.37 -1.46 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.40 3.29 6.85 -40.82 -0.28 3.01 16 29 H 0.13 2.06 7.64 -52.49 -0.40 1.66 16 30 H 0.14 2.54 7.51 -52.49 -0.39 2.14 16 31 H 0.10 1.95 6.13 -52.48 -0.32 1.63 16 32 H 0.13 3.07 6.20 -52.49 -0.33 2.74 16 33 H 0.29 6.01 8.29 -40.82 -0.34 5.67 16 34 H 0.13 2.83 8.06 -52.48 -0.42 2.41 16 35 H 0.13 1.87 6.13 -52.49 -0.32 1.55 16 36 H 0.12 1.16 6.39 -52.49 -0.34 0.82 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -28.51 312.65 -8.38 -36.89 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -3.62 Total: 10.55 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -4.66 Total: -17.53 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.14 Total: -36.09 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 16.46 SS G_CDS: -5.03 Total: 11.43 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.51 -8.38 -36.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240564778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.378 kcal (2) G-P(sol) polarization free energy of solvation -28.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds