Wall clock time and date at job start Tue Mar 31 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 119.99666 * 2 1 4 4 O 1.21570 * 120.00210 * 0.02562 * 3 2 1 5 5 C 1.47780 * 119.99915 * 180.02562 * 3 2 1 6 6 C 1.39682 * 120.02196 * 180.02562 * 5 3 2 7 7 C 1.37696 * 119.97430 * 180.02562 * 6 5 3 8 8 C 1.39487 * 120.02397 * 359.97438 * 7 6 5 9 9 C 1.48307 * 119.97393 * 179.97438 * 8 7 6 10 10 C 1.38915 * 119.60978 * 180.02562 * 9 8 7 11 11 C 1.40877 * 118.76004 * 179.97438 * 10 9 8 12 12 C 1.41515 * 120.98604 * 180.29269 * 11 10 9 13 13 H 1.07998 * 120.00111 * 330.74787 * 12 11 10 14 14 C 1.40057 * 119.99700 * 150.75435 * 12 11 10 15 15 N 1.30733 * 119.99879 * 161.50366 * 14 12 11 16 16 Si 1.86795 * 120.00121 * 341.50181 * 14 12 11 17 17 H 1.48502 * 109.47020 * 95.38309 * 16 14 12 18 18 H 1.48497 * 109.47424 * 215.38515 * 16 14 12 19 19 H 1.48497 * 109.47212 * 335.38934 * 16 14 12 20 20 C 1.41125 * 118.02307 * 0.02562 * 11 10 9 21 21 C 1.37793 * 119.07134 * 359.97438 * 20 11 10 22 22 N 1.31884 * 121.16328 * 359.97438 * 21 20 11 23 23 C 1.39485 * 120.04592 * 0.27588 * 8 7 6 24 24 C 1.37702 * 120.02176 * 359.48544 * 23 8 7 25 25 H 1.08997 * 109.47202 * 59.99850 * 1 2 3 26 26 H 1.09000 * 109.46810 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47289 * 299.99309 * 1 2 3 28 28 H 0.97000 * 120.00098 * 180.02562 * 2 1 3 29 29 H 1.08001 * 120.00877 * 0.02562 * 6 5 3 30 30 H 1.08001 * 119.98639 * 179.97438 * 7 6 5 31 31 H 1.08003 * 120.62543 * 359.97438 * 10 9 8 32 32 H 0.96996 * 120.00047 * 179.97438 * 15 14 12 33 33 H 1.07995 * 120.46673 * 179.97438 * 20 11 10 34 34 H 1.08002 * 119.42282 * 180.02562 * 21 20 11 35 35 H 1.07998 * 119.98307 * 179.74525 * 23 8 7 36 36 H 1.07995 * 120.00804 * 180.25714 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2200 0.0005 5 6 3.6166 1.1673 -0.0006 6 6 4.3154 2.3767 0.0000 7 6 5.6924 2.3756 -0.0011 8 6 6.3894 1.1674 -0.0022 9 6 7.8724 1.1675 -0.0039 10 6 8.5589 -0.0402 -0.0055 11 6 9.9675 -0.0192 -0.0077 12 6 10.7141 -1.2213 -0.0156 13 1 10.3065 -2.1131 0.4372 14 6 11.9816 -1.2545 -0.6104 15 7 12.8158 -2.2177 -0.3181 16 14 12.4802 0.0773 -1.8216 17 1 13.2415 1.1346 -1.1090 18 1 13.3313 -0.5141 -2.8851 19 1 11.2640 0.6703 -2.4335 20 6 10.6119 1.2364 -0.0076 21 6 9.8462 2.3820 -0.0059 22 7 8.5287 2.3222 -0.0049 23 6 5.6925 -0.0409 -0.0080 24 6 4.3155 -0.0420 -0.0020 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 3.7759 3.3123 0.0012 30 1 6.2329 3.3107 -0.0011 31 1 8.0228 -0.9778 -0.0051 32 1 13.6935 -2.2409 -0.7303 33 1 11.6901 1.2985 -0.0088 34 1 10.3334 3.3458 -0.0062 35 1 6.2332 -0.9758 -0.0130 36 1 3.7762 -0.9777 -0.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240565838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:15 Heat of formation + Delta-G solvation = 10.537902 kcal Electronic energy + Delta-G solvation = -20212.599259 eV Core-core repulsion = 17046.864832 eV Total energy + Delta-G solvation = -3165.734427 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15501 -39.03198 -37.71890 -34.80767 -34.21166 -32.29130 -31.57111 -30.77843 -29.09414 -26.86706 -26.10454 -23.84957 -22.75442 -21.44461 -20.92356 -20.22081 -18.31263 -17.74964 -16.27635 -16.01104 -15.48138 -15.31217 -15.04683 -14.87651 -14.37880 -13.91886 -13.77813 -13.46233 -13.37372 -13.08242 -13.00051 -12.88916 -12.51174 -12.14049 -11.82180 -11.62131 -11.09123 -10.94532 -10.82462 -10.72081 -10.02015 -9.95436 -9.53332 -9.37427 -9.10160 -8.83339 -8.42285 -8.27508 -7.55259 -7.18858 -4.84299 0.74714 1.57870 2.27751 2.46751 2.96316 3.06025 3.07609 3.08202 3.19306 3.80090 4.01983 4.48418 4.62404 4.82359 4.93348 5.05692 5.12755 5.26670 5.27538 5.52466 5.54894 5.60127 5.74226 5.92601 6.14791 6.17943 6.24242 6.34053 6.39338 6.46069 6.47913 6.78897 6.81023 6.95245 7.07286 7.11726 7.32024 7.50228 7.76282 8.07792 8.10339 8.29614 8.51854 9.17182 9.82039 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.034175 B = 0.003435 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.111102 B = 8148.440930 C = 8736.743150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.736 5.736 3 C 0.562 3.438 4 O -0.542 6.542 5 C -0.154 4.154 6 C -0.064 4.064 7 C -0.100 4.100 8 C 0.014 3.986 9 C 0.150 3.850 10 C -0.230 4.230 11 C 0.107 3.893 12 C -0.437 4.437 13 H 0.095 0.905 14 C 0.087 3.913 15 N -0.793 5.793 16 Si 0.914 3.086 17 H -0.266 1.266 18 H -0.287 1.287 19 H -0.245 1.245 20 C -0.284 4.284 21 C 0.121 3.879 22 N -0.562 5.562 23 C -0.119 4.119 24 C -0.088 4.088 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.402 0.598 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.114 0.886 32 H 0.290 0.710 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.761 0.811 -0.747 13.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.388 5.388 3 C 0.351 3.649 4 O -0.421 6.421 5 C -0.157 4.157 6 C -0.083 4.083 7 C -0.119 4.119 8 C 0.013 3.987 9 C 0.019 3.981 10 C -0.253 4.253 11 C 0.099 3.901 12 C -0.467 4.467 13 H 0.113 0.887 14 C -0.135 4.135 15 N -0.416 5.416 16 Si 0.739 3.261 17 H -0.192 1.192 18 H -0.214 1.214 19 H -0.168 1.168 20 C -0.306 4.306 21 C -0.033 4.033 22 N -0.277 5.277 23 C -0.138 4.138 24 C -0.107 4.107 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.237 0.763 29 H 0.150 0.850 30 H 0.159 0.841 31 H 0.132 0.868 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.147 0.853 35 H 0.153 0.847 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.490 2.163 -0.747 14.669 hybrid contribution 1.268 -0.924 -0.465 1.637 sum -13.221 1.239 -1.211 13.334 Atomic orbital electron populations 1.21526 0.79515 1.02152 1.02354 1.45730 1.07735 1.08853 1.76510 1.18414 0.87544 0.83480 0.75465 1.90750 1.70155 1.31240 1.49914 1.19799 0.91917 0.94813 1.09193 1.21186 0.93859 0.97297 0.95932 1.21343 0.92917 0.98949 0.98663 1.19049 0.91928 0.93001 0.94692 1.19199 0.90869 0.89828 0.98225 1.21944 0.94484 0.96771 1.12084 1.17862 0.91665 0.92879 0.87719 1.19523 0.98713 0.96873 1.31552 0.88662 1.26210 0.94822 0.96358 0.96122 1.69638 1.06634 1.30797 1.34559 0.86259 0.79942 0.80110 0.79749 1.19220 1.21436 1.16848 1.21996 0.99492 0.93865 1.15284 1.21915 0.89332 0.97027 0.95066 1.67325 1.09782 1.27891 1.22729 1.21253 0.93493 0.98345 1.00660 1.21061 0.94274 0.96401 0.98957 0.92210 0.90660 0.92212 0.76276 0.84961 0.84116 0.86825 0.89974 0.87275 0.85289 0.84668 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 10.70 59.85 0.64 1.33 16 2 N -0.74 -7.15 5.66 -68.07 -0.39 -7.53 16 3 C 0.56 7.69 7.77 -12.36 -0.10 7.60 16 4 O -0.54 -9.18 16.33 5.30 0.09 -9.10 16 5 C -0.15 -2.14 5.88 -104.92 -0.62 -2.76 16 6 C -0.06 -0.96 9.58 -39.24 -0.38 -1.33 16 7 C -0.10 -1.65 9.55 -39.31 -0.38 -2.02 16 8 C 0.01 0.26 5.88 -104.82 -0.62 -0.36 16 9 C 0.15 3.16 6.72 -83.05 -0.56 2.60 16 10 C -0.23 -5.06 9.25 -38.33 -0.35 -5.42 16 11 C 0.11 2.57 5.14 -106.56 -0.55 2.02 16 12 C -0.44 -11.05 9.63 -37.65 -0.36 -11.41 16 13 H 0.10 2.49 8.06 -52.49 -0.42 2.07 16 14 C 0.09 2.13 5.42 -17.34 -0.09 2.03 16 15 N -0.79 -19.79 13.92 55.55 0.77 -19.01 16 16 Si 0.91 19.59 24.54 -169.99 -4.17 15.42 16 17 H -0.27 -5.50 6.70 56.52 0.38 -5.12 16 18 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.25 -5.48 6.85 56.52 0.39 -5.09 16 20 C -0.28 -6.51 7.28 -38.65 -0.28 -6.80 16 21 C 0.12 2.59 11.15 -17.69 -0.20 2.40 16 22 N -0.56 -12.23 9.38 -9.95 -0.09 -12.33 16 23 C -0.12 -1.77 9.40 -39.31 -0.37 -2.14 16 24 C -0.09 -1.10 9.53 -39.24 -0.37 -1.47 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.40 2.83 6.85 -40.82 -0.28 2.55 16 29 H 0.13 1.89 7.64 -52.49 -0.40 1.49 16 30 H 0.14 2.33 7.52 -52.49 -0.39 1.94 16 31 H 0.11 2.25 6.17 -52.48 -0.32 1.93 16 32 H 0.29 6.50 8.29 -40.82 -0.34 6.16 16 33 H 0.11 2.45 4.77 -52.49 -0.25 2.20 16 34 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 35 H 0.14 1.88 6.15 -52.49 -0.32 1.56 16 36 H 0.12 1.05 6.39 -52.49 -0.34 0.72 16 LS Contribution 307.68 15.07 4.64 4.64 Total: -1.00 -29.49 307.68 -7.32 -36.81 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -3.59 Total: 6.85 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -4.58 Total: -15.75 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.29 Total: -38.87 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.17 Total: 15.42 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.49 -7.32 -36.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240565838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.351 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds