Wall clock time and date at job start Tue Mar 31 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 119.99666 * 2 1 4 4 O 1.21570 * 120.00210 * 0.02562 * 3 2 1 5 5 C 1.47780 * 119.99915 * 180.02562 * 3 2 1 6 6 C 1.39682 * 120.02196 * 180.02562 * 5 3 2 7 7 C 1.37696 * 119.97430 * 180.02562 * 6 5 3 8 8 C 1.39487 * 120.02397 * 359.97438 * 7 6 5 9 9 C 1.48307 * 119.97393 * 179.97438 * 8 7 6 10 10 C 1.38915 * 119.60978 * 180.02562 * 9 8 7 11 11 C 1.40877 * 118.76004 * 179.97438 * 10 9 8 12 12 C 1.41515 * 120.98604 * 180.29269 * 11 10 9 13 13 H 1.07998 * 120.00111 * 330.74787 * 12 11 10 14 14 C 1.40057 * 119.99700 * 150.75435 * 12 11 10 15 15 N 1.30733 * 119.99879 * 161.50366 * 14 12 11 16 16 Si 1.86795 * 120.00121 * 341.50181 * 14 12 11 17 17 H 1.48502 * 109.47020 * 95.38309 * 16 14 12 18 18 H 1.48497 * 109.47424 * 215.38515 * 16 14 12 19 19 H 1.48497 * 109.47212 * 335.38934 * 16 14 12 20 20 C 1.41125 * 118.02307 * 0.02562 * 11 10 9 21 21 C 1.37793 * 119.07134 * 359.97438 * 20 11 10 22 22 N 1.31884 * 121.16328 * 359.97438 * 21 20 11 23 23 C 1.39485 * 120.04592 * 0.27588 * 8 7 6 24 24 C 1.37702 * 120.02176 * 359.48544 * 23 8 7 25 25 H 1.08997 * 109.47202 * 59.99850 * 1 2 3 26 26 H 1.09000 * 109.46810 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47289 * 299.99309 * 1 2 3 28 28 H 0.97000 * 120.00098 * 180.02562 * 2 1 3 29 29 H 1.08001 * 120.00877 * 0.02562 * 6 5 3 30 30 H 1.08001 * 119.98639 * 179.97438 * 7 6 5 31 31 H 1.08003 * 120.62543 * 359.97438 * 10 9 8 32 32 H 0.96996 * 120.00047 * 179.97438 * 15 14 12 33 33 H 1.07995 * 120.46673 * 179.97438 * 20 11 10 34 34 H 1.08002 * 119.42282 * 180.02562 * 21 20 11 35 35 H 1.07998 * 119.98307 * 179.74525 * 23 8 7 36 36 H 1.07995 * 120.00804 * 180.25714 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2200 0.0005 5 6 3.6166 1.1673 -0.0006 6 6 4.3154 2.3767 0.0000 7 6 5.6924 2.3756 -0.0011 8 6 6.3894 1.1674 -0.0022 9 6 7.8724 1.1675 -0.0039 10 6 8.5589 -0.0402 -0.0055 11 6 9.9675 -0.0192 -0.0077 12 6 10.7141 -1.2213 -0.0156 13 1 10.3065 -2.1131 0.4372 14 6 11.9816 -1.2545 -0.6104 15 7 12.8158 -2.2177 -0.3181 16 14 12.4802 0.0773 -1.8216 17 1 13.2415 1.1346 -1.1090 18 1 13.3313 -0.5141 -2.8851 19 1 11.2640 0.6703 -2.4335 20 6 10.6119 1.2364 -0.0076 21 6 9.8462 2.3820 -0.0059 22 7 8.5287 2.3222 -0.0049 23 6 5.6925 -0.0409 -0.0080 24 6 4.3155 -0.0420 -0.0020 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 3.7759 3.3123 0.0012 30 1 6.2329 3.3107 -0.0011 31 1 8.0228 -0.9778 -0.0051 32 1 13.6935 -2.2409 -0.7303 33 1 11.6901 1.2985 -0.0088 34 1 10.3334 3.3458 -0.0062 35 1 6.2332 -0.9758 -0.0130 36 1 3.7762 -0.9777 -0.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240565838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:15 Heat of formation + Delta-G solvation = -8.415455 kcal Electronic energy + Delta-G solvation = -20213.421138 eV Core-core repulsion = 17046.864832 eV Total energy + Delta-G solvation = -3166.556306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.30725 -40.53146 -39.03022 -36.00957 -35.74159 -33.73552 -33.26223 -31.99597 -30.50399 -27.90996 -27.77651 -25.14169 -24.14571 -22.82299 -22.43713 -21.41266 -19.63270 -19.18319 -17.83204 -17.23439 -16.95876 -16.57783 -16.27050 -16.25914 -15.76180 -15.25028 -15.16605 -14.86349 -14.76476 -14.64151 -14.17005 -14.05058 -13.59963 -13.26548 -13.20962 -13.06695 -12.83627 -12.57477 -12.43647 -12.03984 -11.71992 -11.28277 -11.14046 -10.60138 -10.21879 -10.15965 -10.00591 -9.98590 -9.07965 -9.01673 -6.73777 -0.53902 0.42120 0.67135 0.78074 1.25059 1.38639 1.45472 1.85021 2.06647 2.21036 2.56816 2.91637 3.37964 3.53024 3.71137 3.87031 3.98194 4.12406 4.36022 4.39766 4.49180 4.53469 4.64417 4.65289 4.71338 4.79313 4.94041 4.98404 5.04101 5.22427 5.24282 5.28532 5.36262 5.38075 5.62996 5.71038 5.84669 6.02375 6.20682 6.48007 6.48390 6.65255 7.15315 7.46112 8.04635 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.034175 B = 0.003435 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.111102 B = 8148.440930 C = 8736.743150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.718 5.718 3 C 0.559 3.441 4 O -0.581 6.581 5 C -0.148 4.148 6 C -0.070 4.070 7 C -0.102 4.102 8 C -0.018 4.018 9 C 0.152 3.848 10 C -0.246 4.246 11 C 0.094 3.906 12 C -0.470 4.470 13 H 0.069 0.931 14 C 0.056 3.944 15 N -0.828 5.828 16 Si 0.963 3.037 17 H -0.252 1.252 18 H -0.273 1.273 19 H -0.261 1.261 20 C -0.299 4.299 21 C 0.120 3.880 22 N -0.567 5.567 23 C -0.117 4.117 24 C -0.070 4.070 25 H 0.052 0.948 26 H 0.115 0.885 27 H 0.052 0.948 28 H 0.418 0.582 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.299 0.701 33 H 0.113 0.887 34 H 0.164 0.836 35 H 0.145 0.855 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.653 0.784 -1.213 15.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.370 5.370 3 C 0.347 3.653 4 O -0.462 6.462 5 C -0.152 4.152 6 C -0.089 4.089 7 C -0.121 4.121 8 C -0.019 4.019 9 C 0.021 3.979 10 C -0.268 4.268 11 C 0.086 3.914 12 C -0.500 4.500 13 H 0.088 0.912 14 C -0.162 4.162 15 N -0.453 5.453 16 Si 0.786 3.214 17 H -0.177 1.177 18 H -0.200 1.200 19 H -0.185 1.185 20 C -0.321 4.321 21 C -0.035 4.035 22 N -0.281 5.281 23 C -0.135 4.135 24 C -0.088 4.088 25 H 0.071 0.929 26 H 0.133 0.867 27 H 0.071 0.929 28 H 0.256 0.744 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.181 0.819 35 H 0.162 0.838 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.379 2.084 -1.203 16.555 hybrid contribution 1.570 -0.886 -0.268 1.822 sum -14.810 1.198 -1.472 14.931 Atomic orbital electron populations 1.21744 0.78006 1.04603 1.01696 1.45671 1.08751 1.08278 1.74286 1.18401 0.87316 0.84072 0.75515 1.90741 1.70659 1.32839 1.51981 1.20016 0.92510 0.94953 1.07706 1.21240 0.93273 0.98270 0.96131 1.21251 0.93470 0.98306 0.99032 1.19052 0.90236 0.94698 0.97951 1.19685 0.92749 0.89208 0.96286 1.22152 0.94004 0.98037 1.12625 1.18066 0.92705 0.92960 0.87700 1.19505 0.99983 0.96720 1.33784 0.91243 1.26798 0.94488 0.97995 0.96930 1.69649 1.07446 1.32286 1.35941 0.85512 0.79225 0.78375 0.78264 1.17654 1.19975 1.18479 1.22141 0.99940 0.94012 1.16010 1.22455 0.89296 0.98064 0.93731 1.67463 1.10036 1.28308 1.22322 1.21425 0.94580 0.97632 0.99888 1.21424 0.93266 0.97713 0.96416 0.92897 0.86677 0.92901 0.74422 0.84679 0.84879 0.85394 0.88988 0.86942 0.81898 0.83767 0.81350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.70 127.77 1.37 2.38 16 2 N -0.72 -11.26 5.66 -487.53 -2.76 -14.02 16 3 C 0.56 13.85 7.77 86.77 0.67 14.53 16 4 O -0.58 -18.86 16.33 -3.94 -0.06 -18.93 16 5 C -0.15 -3.75 5.88 -20.06 -0.12 -3.87 16 6 C -0.07 -2.02 9.58 22.49 0.22 -1.81 16 7 C -0.10 -3.28 9.55 22.44 0.21 -3.06 16 8 C -0.02 -0.63 5.88 -20.00 -0.12 -0.75 16 9 C 0.15 6.35 6.72 41.84 0.28 6.63 16 10 C -0.25 -10.89 9.25 23.08 0.21 -10.67 16 11 C 0.09 4.57 5.14 -21.12 -0.11 4.46 16 12 C -0.47 -24.63 9.63 23.52 0.23 -24.40 16 13 H 0.07 3.85 8.06 -2.91 -0.02 3.83 16 14 C 0.06 2.82 5.42 85.30 0.46 3.28 16 15 N -0.83 -42.25 13.92 21.84 0.30 -41.95 16 16 Si 0.96 40.22 24.54 68.60 1.68 41.90 16 17 H -0.25 -9.82 6.70 99.48 0.67 -9.15 16 18 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 19 H -0.26 -11.44 6.85 99.48 0.68 -10.76 16 20 C -0.30 -13.63 7.28 22.87 0.17 -13.46 16 21 C 0.12 4.97 11.15 84.58 0.94 5.91 16 22 N -0.57 -24.21 9.38 -185.38 -1.74 -25.95 16 23 C -0.12 -3.22 9.40 22.44 0.21 -3.01 16 24 C -0.07 -1.49 9.53 22.49 0.21 -1.27 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.42 3.81 6.85 -92.71 -0.63 3.18 16 29 H 0.14 3.77 7.64 -2.91 -0.02 3.75 16 30 H 0.13 4.39 7.52 -2.91 -0.02 4.37 16 31 H 0.13 5.10 6.17 -2.91 -0.02 5.09 16 32 H 0.30 13.60 8.29 -92.71 -0.77 12.83 16 33 H 0.11 4.97 4.77 -2.91 -0.01 4.96 16 34 H 0.16 5.52 8.06 -2.91 -0.02 5.49 16 35 H 0.14 3.70 6.15 -2.91 -0.02 3.68 16 36 H 0.17 1.97 6.39 -2.91 -0.02 1.95 16 Total: -1.00 -65.57 307.68 2.70 -62.87 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.43 Total: 21.19 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 4.85 Total: -25.11 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -4.20 Total: -81.92 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.06 Total: -18.93 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.68 Total: 41.90 kcal Total: -65.57 2.70 -62.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240565838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.452 kcal (2) G-P(sol) polarization free energy of solvation -65.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds