Wall clock time and date at job start Tue Mar 31 2020 05:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00408 * 2 1 4 4 O 1.21517 * 119.99970 * 359.97438 * 3 2 1 5 5 C 1.48168 * 120.00606 * 179.97438 * 3 2 1 6 6 C 1.39062 * 119.66076 * 179.97438 * 5 3 2 7 7 C 1.39940 * 118.88768 * 180.02562 * 6 5 3 8 8 C 1.48021 * 120.89008 * 180.02562 * 7 6 5 9 9 C 1.39922 * 119.87970 * 179.97438 * 8 7 6 10 10 C 1.36275 * 120.12280 * 180.02562 * 9 8 7 11 11 C 1.40923 * 119.87687 * 359.97438 * 10 9 8 12 12 C 1.41035 * 120.12221 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99324 * 335.62707 * 12 11 10 14 14 C 1.40062 * 120.00127 * 155.34485 * 12 11 10 15 15 N 1.30755 * 120.00078 * 341.96423 * 14 12 11 16 16 Si 1.86800 * 119.99936 * 161.96601 * 14 12 11 17 17 H 1.48501 * 109.47102 * 90.00164 * 16 14 12 18 18 H 1.48500 * 109.47208 * 210.00056 * 16 14 12 19 19 H 1.48503 * 109.46951 * 329.99909 * 16 14 12 20 20 C 1.40924 * 119.76124 * 0.27889 * 11 10 9 21 21 C 1.36274 * 119.87629 * 359.46075 * 20 11 10 22 22 C 1.39964 * 118.21608 * 0.27198 * 7 6 5 23 23 C 1.38272 * 119.18305 * 359.43856 * 22 7 6 24 24 N 1.31598 * 121.04984 * 0.57933 * 23 22 7 25 25 H 1.09003 * 109.46527 * 59.99924 * 1 2 3 26 26 H 1.08998 * 109.46898 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46926 * 300.00562 * 1 2 3 28 28 H 0.96996 * 120.00136 * 180.02562 * 2 1 3 29 29 H 1.07998 * 120.55638 * 0.02712 * 6 5 3 30 30 H 1.07999 * 119.93485 * 0.02562 * 9 8 7 31 31 H 1.07996 * 120.06041 * 179.97438 * 10 9 8 32 32 H 0.97001 * 120.00163 * 179.97438 * 15 14 12 33 33 H 1.08004 * 120.06408 * 179.72261 * 20 11 10 34 34 H 1.07997 * 119.94152 * 180.25145 * 21 20 11 35 35 H 1.07995 * 120.40325 * 179.70728 * 22 7 6 36 36 H 1.07998 * 119.47327 * 180.26877 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5314 2.2196 -0.0005 5 6 3.6206 1.1672 0.0006 6 6 4.3088 2.3756 0.0000 7 6 5.7080 2.3568 0.0000 8 6 6.4850 3.6167 0.0000 9 6 7.8835 3.5732 0.0006 10 6 8.6037 4.7301 0.0011 11 6 7.9374 5.9718 0.0006 12 6 8.6776 7.1723 0.0006 13 1 9.6861 7.1848 0.3870 14 6 8.1071 8.3469 -0.5059 15 7 7.0596 8.2814 -1.2857 16 14 8.8427 10.0070 -0.0674 17 1 9.8754 10.3713 -1.0704 18 1 7.7728 11.0368 -0.0622 19 1 9.4647 9.9327 1.2790 20 6 6.5287 6.0098 0.0054 21 6 5.8183 4.8469 -0.0005 22 6 6.3531 1.1147 -0.0053 23 6 5.5926 -0.0400 0.0016 24 7 4.2777 0.0132 0.0015 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.9500 -0.8400 -0.0004 29 1 3.7723 3.3129 -0.0004 30 1 8.3931 2.6210 0.0006 31 1 9.6831 4.6953 0.0020 32 1 6.6642 9.0949 -1.6362 33 1 6.0130 6.9587 0.0095 34 1 4.7387 4.8747 -0.0009 35 1 7.4316 1.0590 -0.0102 36 1 6.0855 -1.0010 0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241431285.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:41 Heat of formation + Delta-G solvation = 8.975467 kcal Electronic energy + Delta-G solvation = -20252.009850 eV Core-core repulsion = 17086.207671 eV Total energy + Delta-G solvation = -3165.802179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.24158 -38.77333 -37.57279 -34.65060 -34.28117 -32.41815 -31.26787 -29.69473 -29.24095 -27.11972 -25.72840 -23.66605 -22.95613 -21.28054 -20.54487 -19.95474 -17.83477 -17.65934 -16.45340 -15.88745 -15.41645 -15.26085 -15.11691 -14.85165 -14.10983 -13.67175 -13.63548 -13.60810 -13.19405 -12.72129 -12.68266 -12.36543 -12.33722 -11.91575 -11.49576 -11.43298 -11.24386 -11.01136 -10.75493 -10.16856 -9.97027 -9.71863 -9.53507 -9.22743 -9.17670 -9.14427 -8.81026 -7.77117 -7.35605 -7.07019 -4.59252 1.00068 1.43240 2.59959 2.88902 2.92226 2.96640 2.97862 3.23078 3.24684 3.70560 4.19270 4.39440 4.53410 4.99848 5.14585 5.30672 5.40401 5.46623 5.50744 5.53729 5.65968 5.78809 5.96012 6.14413 6.28699 6.37449 6.41433 6.55986 6.73554 6.80098 6.98596 7.06659 7.16091 7.37392 7.47232 7.66232 7.79667 7.90874 8.00342 8.07008 8.33434 8.35101 8.56517 8.69337 9.83279 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027483 B = 0.003515 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.555767 B = 7965.042508 C = 8899.238046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.722 5.722 3 C 0.574 3.426 4 O -0.535 6.535 5 C 0.073 3.927 6 C -0.134 4.134 7 C 0.061 3.939 8 C -0.222 4.222 9 C -0.051 4.051 10 C -0.233 4.233 11 C 0.123 3.877 12 C -0.437 4.437 13 H 0.085 0.915 14 C 0.072 3.928 15 N -0.768 5.768 16 Si 0.914 3.086 17 H -0.266 1.266 18 H -0.272 1.272 19 H -0.257 1.257 20 C -0.174 4.174 21 C -0.065 4.065 22 C -0.184 4.184 23 C 0.102 3.898 24 N -0.500 5.500 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.412 0.588 29 H 0.142 0.858 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.288 0.712 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.134 0.866 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.594 -10.842 1.571 11.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.374 5.374 3 C 0.360 3.640 4 O -0.411 6.411 5 C -0.063 4.063 6 C -0.156 4.156 7 C 0.054 3.946 8 C -0.224 4.224 9 C -0.070 4.070 10 C -0.252 4.252 11 C 0.120 3.880 12 C -0.464 4.464 13 H 0.103 0.897 14 C -0.150 4.150 15 N -0.390 5.390 16 Si 0.737 3.263 17 H -0.191 1.191 18 H -0.197 1.197 19 H -0.181 1.181 20 C -0.193 4.193 21 C -0.084 4.084 22 C -0.204 4.204 23 C -0.056 4.056 24 N -0.214 5.214 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.247 0.753 29 H 0.160 0.840 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.138 0.862 34 H 0.113 0.887 35 H 0.152 0.848 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.764 -10.704 1.414 12.239 hybrid contribution 1.030 1.093 0.007 1.502 sum -4.733 -9.611 1.421 10.808 Atomic orbital electron populations 1.21547 0.79690 1.02084 1.02332 1.45614 1.07369 1.09235 1.75189 1.18072 0.86297 0.83710 0.75891 1.90773 1.69175 1.31404 1.49727 1.20696 0.93115 0.90044 1.02423 1.22129 0.94145 0.98761 1.00523 1.19345 0.91979 0.93752 0.89549 1.17892 0.92424 0.90103 1.21998 1.20374 0.92616 0.96814 0.97162 1.20693 0.97953 0.92466 1.14086 1.17783 0.92265 0.92144 0.85843 1.19824 1.01011 0.92540 1.33026 0.89664 1.26110 0.94255 1.02080 0.92515 1.69789 1.17612 1.31819 1.19804 0.86205 0.79684 0.79891 0.80521 1.19114 1.19700 1.18082 1.21001 0.94156 0.96986 1.07141 1.20568 0.97748 0.92293 0.97810 1.22313 1.01431 0.92625 1.04070 1.22402 0.88863 0.98131 0.96220 1.67347 1.10743 1.28142 1.15145 0.92220 0.90683 0.92219 0.75285 0.84032 0.88752 0.88451 0.90063 0.86235 0.88656 0.84835 0.83001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.70 59.85 0.64 1.49 16 2 N -0.72 -9.07 5.70 -67.94 -0.39 -9.46 16 3 C 0.57 9.62 7.81 -12.18 -0.10 9.52 16 4 O -0.53 -10.50 16.32 5.35 0.09 -10.41 16 5 C 0.07 1.27 6.75 -83.07 -0.56 0.71 16 6 C -0.13 -2.55 9.02 -38.64 -0.35 -2.90 16 7 C 0.06 1.17 5.91 -104.60 -0.62 0.55 16 8 C -0.22 -4.82 5.90 -104.63 -0.62 -5.43 16 9 C -0.05 -1.08 9.38 -39.66 -0.37 -1.45 16 10 C -0.23 -5.32 9.73 -39.27 -0.38 -5.70 16 11 C 0.12 3.07 5.57 -106.80 -0.59 2.48 16 12 C -0.44 -10.68 9.03 -37.84 -0.34 -11.02 16 13 H 0.09 1.97 7.91 -52.48 -0.42 1.56 16 14 C 0.07 1.67 5.13 -17.33 -0.09 1.58 16 15 N -0.77 -18.48 10.98 55.55 0.61 -17.87 16 16 Si 0.91 17.14 29.60 -169.99 -5.03 12.11 16 17 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 18 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 19 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 20 C -0.17 -4.30 8.63 -39.27 -0.34 -4.64 16 21 C -0.07 -1.50 9.38 -39.66 -0.37 -1.88 16 22 C -0.18 -2.96 9.51 -38.92 -0.37 -3.33 16 23 C 0.10 1.46 11.17 -17.64 -0.20 1.26 16 24 N -0.50 -7.80 9.52 -9.90 -0.09 -7.89 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.41 4.46 8.15 -40.82 -0.33 4.12 16 29 H 0.14 2.79 5.90 -52.49 -0.31 2.48 16 30 H 0.09 1.69 6.26 -52.49 -0.33 1.36 16 31 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.29 6.25 8.29 -40.82 -0.34 5.92 16 33 H 0.12 3.04 6.18 -52.48 -0.32 2.72 16 34 H 0.10 2.05 6.27 -52.49 -0.33 1.72 16 35 H 0.13 1.89 6.31 -52.49 -0.33 1.56 16 36 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -28.08 312.86 -8.38 -36.46 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -3.62 Total: 11.11 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -4.66 Total: -18.76 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.13 Total: -35.22 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.08 -8.38 -36.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241431285.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.432 kcal (2) G-P(sol) polarization free energy of solvation -28.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds