Wall clock time and date at job start Tue Mar 31 2020 05:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00408 * 2 1 4 4 O 1.21517 * 119.99970 * 359.97438 * 3 2 1 5 5 C 1.48168 * 120.00606 * 179.97438 * 3 2 1 6 6 C 1.39062 * 119.66076 * 179.97438 * 5 3 2 7 7 C 1.39940 * 118.88768 * 180.02562 * 6 5 3 8 8 C 1.48021 * 120.89008 * 180.02562 * 7 6 5 9 9 C 1.39922 * 119.87970 * 179.97438 * 8 7 6 10 10 C 1.36275 * 120.12280 * 180.02562 * 9 8 7 11 11 C 1.40923 * 119.87687 * 359.97438 * 10 9 8 12 12 C 1.41035 * 120.12221 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99324 * 335.62707 * 12 11 10 14 14 C 1.40062 * 120.00127 * 155.34485 * 12 11 10 15 15 N 1.30755 * 120.00078 * 341.96423 * 14 12 11 16 16 Si 1.86800 * 119.99936 * 161.96601 * 14 12 11 17 17 H 1.48501 * 109.47102 * 90.00164 * 16 14 12 18 18 H 1.48500 * 109.47208 * 210.00056 * 16 14 12 19 19 H 1.48503 * 109.46951 * 329.99909 * 16 14 12 20 20 C 1.40924 * 119.76124 * 0.27889 * 11 10 9 21 21 C 1.36274 * 119.87629 * 359.46075 * 20 11 10 22 22 C 1.39964 * 118.21608 * 0.27198 * 7 6 5 23 23 C 1.38272 * 119.18305 * 359.43856 * 22 7 6 24 24 N 1.31598 * 121.04984 * 0.57933 * 23 22 7 25 25 H 1.09003 * 109.46527 * 59.99924 * 1 2 3 26 26 H 1.08998 * 109.46898 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46926 * 300.00562 * 1 2 3 28 28 H 0.96996 * 120.00136 * 180.02562 * 2 1 3 29 29 H 1.07998 * 120.55638 * 0.02712 * 6 5 3 30 30 H 1.07999 * 119.93485 * 0.02562 * 9 8 7 31 31 H 1.07996 * 120.06041 * 179.97438 * 10 9 8 32 32 H 0.97001 * 120.00163 * 179.97438 * 15 14 12 33 33 H 1.08004 * 120.06408 * 179.72261 * 20 11 10 34 34 H 1.07997 * 119.94152 * 180.25145 * 21 20 11 35 35 H 1.07995 * 120.40325 * 179.70728 * 22 7 6 36 36 H 1.07998 * 119.47327 * 180.26877 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5314 2.2196 -0.0005 5 6 3.6206 1.1672 0.0006 6 6 4.3088 2.3756 0.0000 7 6 5.7080 2.3568 0.0000 8 6 6.4850 3.6167 0.0000 9 6 7.8835 3.5732 0.0006 10 6 8.6037 4.7301 0.0011 11 6 7.9374 5.9718 0.0006 12 6 8.6776 7.1723 0.0006 13 1 9.6861 7.1848 0.3870 14 6 8.1071 8.3469 -0.5059 15 7 7.0596 8.2814 -1.2857 16 14 8.8427 10.0070 -0.0674 17 1 9.8754 10.3713 -1.0704 18 1 7.7728 11.0368 -0.0622 19 1 9.4647 9.9327 1.2790 20 6 6.5287 6.0098 0.0054 21 6 5.8183 4.8469 -0.0005 22 6 6.3531 1.1147 -0.0053 23 6 5.5926 -0.0400 0.0016 24 7 4.2777 0.0132 0.0015 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.9500 -0.8400 -0.0004 29 1 3.7723 3.3129 -0.0004 30 1 8.3931 2.6210 0.0006 31 1 9.6831 4.6953 0.0020 32 1 6.6642 9.0949 -1.6362 33 1 6.0130 6.9587 0.0095 34 1 4.7387 4.8747 -0.0009 35 1 7.4316 1.0590 -0.0102 36 1 6.0855 -1.0010 0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241431285.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:40 Heat of formation + Delta-G solvation = -7.904356 kcal Electronic energy + Delta-G solvation = -20252.741814 eV Core-core repulsion = 17086.207671 eV Total energy + Delta-G solvation = -3166.534143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58082 -40.15776 -39.21378 -36.06361 -35.69928 -33.95680 -32.62966 -31.41175 -30.90763 -28.15105 -27.39909 -24.98630 -24.42987 -22.83507 -22.18217 -21.33764 -19.41220 -19.16884 -17.83393 -17.27549 -16.96415 -16.47234 -16.43004 -16.28400 -15.63956 -15.16315 -15.04702 -14.80672 -14.76347 -14.31621 -13.99673 -13.86019 -13.58888 -13.13522 -13.10433 -12.92294 -12.81897 -12.65812 -12.28345 -11.66968 -11.51918 -11.32693 -11.25426 -10.79795 -10.56264 -10.35293 -10.02998 -9.55894 -9.08518 -8.77278 -6.41058 -0.36989 -0.01534 1.05246 1.15190 1.36945 1.47264 1.53160 1.77971 2.11005 2.14498 2.61535 3.02091 3.20237 3.70643 3.80797 3.88475 4.12475 4.13494 4.30274 4.34198 4.45103 4.60013 4.68532 4.81725 4.88427 4.91944 4.99657 5.05404 5.11379 5.27758 5.33198 5.45097 5.61124 5.67666 5.91341 6.00714 6.14992 6.22811 6.35746 6.56302 6.78018 6.83536 6.90759 7.10648 8.16453 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.027483 B = 0.003515 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.555767 B = 7965.042508 C = 8899.238046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.703 5.703 3 C 0.566 3.434 4 O -0.576 6.576 5 C 0.067 3.933 6 C -0.151 4.151 7 C 0.036 3.964 8 C -0.219 4.219 9 C -0.051 4.051 10 C -0.246 4.246 11 C 0.093 3.907 12 C -0.476 4.476 13 H 0.089 0.911 14 C 0.033 3.967 15 N -0.808 5.808 16 Si 0.987 3.013 17 H -0.258 1.258 18 H -0.267 1.267 19 H -0.255 1.255 20 C -0.198 4.198 21 C -0.079 4.079 22 C -0.168 4.168 23 C 0.113 3.887 24 N -0.483 5.483 25 H 0.053 0.947 26 H 0.119 0.881 27 H 0.054 0.946 28 H 0.423 0.577 29 H 0.120 0.880 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.294 0.706 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.161 0.839 36 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 -14.295 1.823 14.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.354 5.354 3 C 0.352 3.648 4 O -0.455 6.455 5 C -0.069 4.069 6 C -0.172 4.172 7 C 0.028 3.972 8 C -0.221 4.221 9 C -0.069 4.069 10 C -0.265 4.265 11 C 0.090 3.910 12 C -0.504 4.504 13 H 0.107 0.893 14 C -0.185 4.185 15 N -0.432 5.432 16 Si 0.806 3.194 17 H -0.182 1.182 18 H -0.192 1.192 19 H -0.178 1.178 20 C -0.217 4.217 21 C -0.098 4.098 22 C -0.188 4.188 23 C -0.046 4.046 24 N -0.196 5.196 25 H 0.072 0.928 26 H 0.137 0.863 27 H 0.073 0.927 28 H 0.260 0.740 29 H 0.138 0.862 30 H 0.153 0.847 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.179 0.821 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.258 -14.215 1.666 15.248 hybrid contribution 0.697 1.745 -0.067 1.880 sum -4.561 -12.470 1.599 13.374 Atomic orbital electron populations 1.21810 0.77694 1.04818 1.01816 1.45588 1.08660 1.08301 1.72863 1.18134 0.86239 0.84338 0.76089 1.90756 1.69756 1.32999 1.51986 1.20793 0.93752 0.89942 1.02386 1.22077 0.94508 0.98930 1.01729 1.19335 0.91905 0.94100 0.91838 1.18205 0.93207 0.90630 1.20012 1.20721 0.92298 0.97950 0.95904 1.20950 0.98857 0.92439 1.14253 1.18120 0.92452 0.93589 0.86872 1.20056 1.01599 0.93578 1.35137 0.89338 1.26963 0.94426 1.05394 0.91695 1.69848 1.19222 1.32985 1.21125 0.85126 0.78909 0.75107 0.80216 1.18214 1.19183 1.17848 1.20940 0.94684 0.96823 1.09245 1.20730 0.98013 0.92889 0.98181 1.22680 1.02990 0.91564 1.01566 1.23242 0.88115 0.99657 0.93570 1.67480 1.11606 1.26753 1.13781 0.92796 0.86302 0.92726 0.73978 0.86178 0.84707 0.87076 0.89544 0.88173 0.88528 0.82130 0.77780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.39 10.70 127.77 1.37 2.76 16 2 N -0.70 -16.02 5.70 -487.16 -2.78 -18.80 16 3 C 0.57 18.51 7.81 86.88 0.68 19.19 16 4 O -0.58 -23.05 16.32 -3.77 -0.06 -23.12 16 5 C 0.07 2.25 6.75 41.84 0.28 2.53 16 6 C -0.15 -5.75 9.02 22.88 0.21 -5.55 16 7 C 0.04 1.32 5.91 -19.85 -0.12 1.20 16 8 C -0.22 -9.50 5.90 -19.87 -0.12 -9.62 16 9 C -0.05 -2.07 9.38 22.22 0.21 -1.87 16 10 C -0.25 -11.35 9.73 22.47 0.22 -11.13 16 11 C 0.09 4.85 5.57 -21.28 -0.12 4.73 16 12 C -0.48 -24.42 9.03 23.40 0.21 -24.21 16 13 H 0.09 4.27 7.91 -2.91 -0.02 4.24 16 14 C 0.03 1.59 5.13 85.30 0.44 2.03 16 15 N -0.81 -41.16 10.98 21.85 0.24 -40.92 16 16 Si 0.99 36.20 29.60 68.60 2.03 38.23 16 17 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 18 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 19 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 20 C -0.20 -10.46 8.63 22.47 0.19 -10.27 16 21 C -0.08 -3.85 9.38 22.22 0.21 -3.65 16 22 C -0.17 -4.69 9.51 22.70 0.22 -4.48 16 23 C 0.11 2.62 11.17 84.74 0.95 3.56 16 24 N -0.48 -13.19 9.52 -185.23 -1.76 -14.96 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.42 7.68 8.15 -92.71 -0.76 6.92 16 29 H 0.12 5.03 5.90 -2.91 -0.02 5.02 16 30 H 0.14 4.31 6.26 -2.91 -0.02 4.30 16 31 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 32 H 0.29 13.47 8.29 -92.71 -0.77 12.70 16 33 H 0.10 5.56 6.18 -2.91 -0.02 5.54 16 34 H 0.10 4.50 6.27 -2.91 -0.02 4.48 16 35 H 0.16 3.62 6.31 -2.91 -0.02 3.60 16 36 H 0.21 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -65.56 312.86 2.87 -62.69 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.38 Total: 31.63 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 4.82 Total: -34.76 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -4.30 Total: -74.68 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.06 Total: -23.12 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 2.03 Total: 38.23 kcal Total: -65.56 2.87 -62.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241431285.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.788 kcal (2) G-P(sol) polarization free energy of solvation -65.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds