Wall clock time and date at job start Tue Mar 31 2020 05:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86793 * 119.99827 * 2 1 4 4 H 1.48504 * 109.47128 * 269.99897 * 3 2 1 5 5 H 1.48493 * 109.47456 * 29.99904 * 3 2 1 6 6 H 1.48504 * 109.46844 * 149.99937 * 3 2 1 7 7 C 1.39995 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99886 * 163.18595 * 7 2 1 9 9 C 1.41029 * 119.99964 * 343.19077 * 7 2 1 10 10 C 1.41331 * 120.54941 * 335.64504 * 9 7 2 11 11 C 1.36559 * 118.41949 * 180.02562 * 10 9 7 12 12 C 1.39971 * 119.46669 * 0.02562 * 11 10 9 13 13 C 1.47841 * 119.45497 * 180.02562 * 12 11 10 14 14 C 1.40067 * 120.86801 * 359.69037 * 13 12 11 15 15 N 1.32017 * 119.00674 * 179.76508 * 14 13 12 16 16 C 1.32620 * 120.90298 * 0.52700 * 15 14 13 17 17 N 1.38142 * 119.04369 * 179.70568 * 16 15 14 18 18 C 1.47486 * 111.00162 * 264.04720 * 17 16 15 19 19 C 1.53507 * 87.93258 * 138.70219 * 18 17 16 20 20 C 1.47475 * 111.00355 * 0.02562 * 17 16 15 21 21 N 1.32621 * 121.91197 * 359.72586 * 16 15 14 22 22 C 1.32022 * 120.90077 * 359.97438 * 21 16 15 23 23 N 1.33061 * 121.08464 * 359.97438 * 12 11 10 24 24 C 1.31266 * 121.72114 * 359.97438 * 23 12 11 25 25 H 0.96996 * 119.99972 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.79158 * 0.04578 * 10 9 7 27 27 H 1.07996 * 120.26445 * 179.97438 * 11 10 9 28 28 H 1.08002 * 120.49481 * 0.03233 * 14 13 12 29 29 H 1.08996 * 113.48126 * 253.47718 * 18 17 16 30 30 H 1.09005 * 113.46994 * 23.94185 * 18 17 16 31 31 H 1.09001 * 114.17239 * 220.32829 * 19 18 17 32 32 H 1.08999 * 114.34238 * 87.63889 * 19 18 17 33 33 H 1.09006 * 113.47778 * 336.06764 * 20 17 16 34 34 H 1.09006 * 113.47573 * 106.46993 * 20 17 16 35 35 H 1.07999 * 120.48910 * 179.97438 * 22 21 16 36 36 H 1.07995 * 119.80037 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6526 0.7000 6 1 3.5397 1.4401 0.7001 7 6 2.0082 -1.2124 0.0005 8 1 3.0535 -1.2325 -0.2700 9 6 1.3482 -2.4075 0.3543 10 6 0.1980 -2.3771 1.1750 11 6 -0.4064 -3.5602 1.4910 12 6 0.1250 -4.7579 0.9987 13 6 -0.5298 -6.0385 1.3405 14 6 -1.6693 -6.0682 2.1545 15 7 -2.2272 -7.2319 2.4327 16 6 -1.7172 -8.3617 1.9614 17 7 -2.3285 -9.5584 2.2816 18 6 -1.6731 -10.1935 3.4402 19 6 -3.0705 -10.5599 3.9593 20 6 -3.5068 -9.3370 3.1403 21 7 -0.6370 -8.3761 1.1921 22 6 -0.0238 -7.2541 0.8634 23 7 1.2092 -4.7627 0.2274 24 6 1.8249 -3.6519 -0.1048 25 1 -0.4850 0.8400 0.0004 26 1 -0.1938 -1.4405 1.5432 27 1 -1.2868 -3.5716 2.1164 28 1 -2.0878 -5.1524 2.5452 29 1 -1.0672 -11.0600 3.1753 30 1 -1.1435 -9.4877 4.0801 31 1 -3.1915 -10.4423 5.0362 32 1 -3.4547 -11.5084 3.5841 33 1 -3.4667 -8.4025 3.7002 34 1 -4.4550 -9.4766 2.6210 35 1 0.8557 -7.2736 0.2368 36 1 2.7024 -3.6919 -0.7330 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242699343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:02 Heat of formation + Delta-G solvation = 123.805831 kcal Electronic energy + Delta-G solvation = -20436.263968 eV Core-core repulsion = 17307.733959 eV Total energy + Delta-G solvation = -3128.530010 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26619 -39.30551 -38.26152 -34.57019 -33.38169 -32.50665 -30.89625 -30.11563 -28.12862 -26.15574 -25.41846 -24.14299 -23.01907 -21.60558 -21.01090 -19.97017 -17.91197 -17.64625 -17.08240 -16.18225 -15.87254 -15.46639 -14.75250 -14.72016 -14.39086 -13.92314 -13.49814 -13.26894 -12.82446 -12.67155 -12.58258 -12.17584 -12.02937 -11.86985 -11.58806 -11.44448 -11.39115 -10.89420 -10.79952 -10.58408 -10.44118 -10.09231 -9.97162 -9.61955 -8.98003 -8.67736 -8.53530 -8.23881 -7.50832 -7.17157 -4.73628 1.03635 1.53105 2.47547 2.78666 2.84838 2.88483 3.00053 3.55801 3.60492 4.01783 4.24481 4.41822 4.53274 4.75896 4.95926 5.06942 5.21725 5.31951 5.43190 5.46456 5.54274 5.62451 5.65718 5.81416 5.88762 5.96731 6.04887 6.24332 6.46117 6.58826 6.61677 6.70691 6.76391 6.99081 7.08114 7.33297 7.54559 7.62761 7.66988 8.12250 8.31024 8.40794 8.49848 9.33486 9.68697 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.051249 B = 0.003141 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.223418 B = 8910.973869 C = 9284.873111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.422 4.422 8 H 0.090 0.910 9 C 0.069 3.931 10 C -0.144 4.144 11 C -0.117 4.117 12 C -0.011 4.011 13 C -0.084 4.084 14 C 0.136 3.864 15 N -0.537 5.537 16 C 0.406 3.594 17 N -0.412 5.412 18 C 0.022 3.978 19 C -0.148 4.148 20 C 0.013 3.987 21 N -0.505 5.505 22 C 0.157 3.843 23 N -0.446 5.446 24 C -0.010 4.010 25 H 0.290 0.710 26 H 0.129 0.871 27 H 0.101 0.899 28 H 0.166 0.834 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.176 0.824 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.467 -7.251 6.322 10.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.152 4.152 3 Si 0.741 3.259 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.450 4.450 8 H 0.108 0.892 9 C 0.064 3.936 10 C -0.168 4.168 11 C -0.137 4.137 12 C -0.144 4.144 13 C -0.089 4.089 14 C -0.032 4.032 15 N -0.254 5.254 16 C 0.051 3.949 17 N -0.134 5.134 18 C -0.106 4.106 19 C -0.186 4.186 20 C -0.116 4.116 21 N -0.220 5.220 22 C -0.011 4.011 23 N -0.153 5.153 24 C -0.177 4.177 25 H 0.101 0.899 26 H 0.146 0.854 27 H 0.119 0.881 28 H 0.183 0.817 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.193 0.807 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.900 -9.116 5.598 11.386 hybrid contribution 0.447 3.098 0.457 3.164 sum -3.454 -6.018 6.055 9.209 Atomic orbital electron populations 1.69779 1.07964 1.30512 1.30886 1.26158 0.94925 1.02246 0.91903 0.86118 0.80634 0.79357 0.79760 1.18941 1.19667 1.17967 1.19769 0.98151 0.90830 1.36275 0.89167 1.18652 0.92003 0.93751 0.89155 1.21319 0.98616 0.96990 0.99877 1.21236 0.99153 0.93299 1.00021 1.18310 0.98315 0.89666 1.08155 1.20352 0.95821 0.95008 0.97760 1.23071 0.91447 0.95145 0.93562 1.68089 1.33838 0.99124 1.24360 1.21505 0.90252 0.89843 0.93341 1.65990 1.05547 1.13669 1.28178 1.23666 0.97365 0.99607 0.89995 1.23177 0.95888 0.99272 1.00273 1.23786 0.94537 0.99144 0.94157 1.67936 1.09109 1.31880 1.13061 1.23315 0.97506 0.85702 0.94621 1.66864 1.06433 1.32226 1.09773 1.22470 1.02588 0.87631 1.05036 0.89885 0.85352 0.88055 0.81722 0.89031 0.91186 0.90150 0.88748 0.88088 0.89632 0.80740 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.50 10.91 55.55 0.61 -16.90 16 2 C 0.07 1.52 5.18 -17.32 -0.09 1.43 16 3 Si 0.92 16.25 29.59 -169.99 -5.03 11.22 16 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 5 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 6 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 7 C -0.42 -9.79 9.06 -37.87 -0.34 -10.13 16 8 H 0.09 1.96 7.90 -52.49 -0.41 1.54 16 9 C 0.07 1.67 5.59 -106.64 -0.60 1.07 16 10 C -0.14 -3.37 8.74 -39.01 -0.34 -3.71 16 11 C -0.12 -2.52 9.40 -39.54 -0.37 -2.89 16 12 C -0.01 -0.23 6.74 -82.76 -0.56 -0.79 16 13 C -0.08 -1.66 5.91 -104.60 -0.62 -2.28 16 14 C 0.14 2.43 10.68 -16.79 -0.18 2.25 16 15 N -0.54 -9.50 8.16 -13.62 -0.11 -9.62 16 16 C 0.41 7.35 6.76 -322.86 -2.18 5.17 16 17 N -0.41 -6.37 6.50 -184.91 -1.20 -7.57 16 18 C 0.02 0.27 7.66 -7.53 -0.06 0.21 16 19 C -0.15 -1.40 8.47 -26.20 -0.22 -1.62 16 20 C 0.01 0.16 7.36 -7.53 -0.06 0.10 16 21 N -0.50 -9.76 10.45 -13.62 -0.14 -9.90 16 22 C 0.16 3.05 10.85 -16.79 -0.18 2.87 16 23 N -0.45 -10.22 9.48 -9.11 -0.09 -10.31 16 24 C -0.01 -0.24 10.97 -16.77 -0.18 -0.43 16 25 H 0.29 5.93 8.30 -40.82 -0.34 5.59 16 26 H 0.13 3.04 6.20 -52.49 -0.33 2.71 16 27 H 0.10 1.88 6.23 -52.49 -0.33 1.55 16 28 H 0.17 2.57 6.28 -52.49 -0.33 2.24 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.90 7.89 -51.93 -0.41 0.49 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.33 6.61 -51.93 -0.34 0.98 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.18 3.25 7.62 -52.49 -0.40 2.85 16 36 H 0.13 2.77 8.06 -52.49 -0.42 2.35 16 LS Contribution 307.46 15.07 4.63 4.63 Total: -1.00 -26.72 307.46 -11.11 -37.83 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -3.80 Total: 9.35 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -5.98 Total: -8.74 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.94 Total: -54.29 kcal Atomic # 14 Polarization: 16.25 SS G_CDS: -5.03 Total: 11.22 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.72 -11.11 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242699343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.635 kcal (2) G-P(sol) polarization free energy of solvation -26.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds