Wall clock time and date at job start Tue Mar 31 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86802 * 120.00439 * 2 1 4 4 H 1.48500 * 109.47486 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47103 * 300.00133 * 3 2 1 6 6 H 1.48494 * 109.47300 * 59.99925 * 3 2 1 7 7 C 1.40011 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99931 * 180.02562 * 7 2 1 9 9 C 1.41362 * 120.00333 * 359.97438 * 7 2 1 10 10 C 1.40699 * 119.77083 * 180.02562 * 9 7 2 11 11 C 1.38281 * 119.19727 * 180.02562 * 10 9 7 12 12 C 1.38690 * 118.69509 * 0.02562 * 11 10 9 13 13 C 1.39928 * 119.46390 * 359.97438 * 12 11 10 14 14 C 1.48219 * 119.61256 * 179.97438 * 13 12 11 15 15 C 1.39818 * 120.84853 * 180.02562 * 14 13 12 16 16 N 1.32080 * 119.03738 * 180.25673 * 15 14 13 17 17 C 1.32564 * 120.87902 * 359.43430 * 16 15 14 18 18 N 1.38230 * 119.07124 * 180.29465 * 17 16 15 19 19 C 1.47487 * 111.00042 * 264.30346 * 18 17 16 20 20 C 1.53510 * 87.93124 * 138.70285 * 19 18 17 21 21 C 1.47484 * 111.00037 * 0.27548 * 18 17 16 22 22 N 1.32578 * 121.86106 * 0.57632 * 17 16 15 23 23 C 1.32075 * 120.87350 * 359.71823 * 22 17 16 24 24 N 1.32269 * 120.77762 * 0.26076 * 13 12 11 25 25 H 0.97011 * 119.99553 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.40025 * 0.02644 * 10 9 7 27 27 H 1.08001 * 120.64833 * 179.97438 * 11 10 9 28 28 H 1.08003 * 120.26785 * 180.02562 * 12 11 10 29 29 H 1.08002 * 120.47532 * 359.97280 * 15 14 13 30 30 H 1.08997 * 113.47526 * 253.46797 * 19 18 17 31 31 H 1.08998 * 113.47680 * 23.93763 * 19 18 17 32 32 H 1.09003 * 114.16870 * 220.33220 * 20 19 18 33 33 H 1.09000 * 114.34532 * 87.63580 * 20 19 18 34 34 H 1.09001 * 113.47222 * 336.06431 * 21 18 17 35 35 H 1.08996 * 113.47272 * 106.47227 * 21 18 17 36 36 H 1.08000 * 120.48060 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8829 2.3964 1.2124 7 6 2.0074 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0001 9 6 1.3007 -2.4368 -0.0005 10 6 2.0090 -3.6524 -0.0005 11 6 1.3057 -4.8430 -0.0011 12 6 -0.0804 -4.7976 -0.0022 13 6 -0.7284 -3.5574 -0.0021 14 6 -2.2097 -3.5050 -0.0038 15 6 -2.8838 -2.2800 -0.0044 16 7 -4.2045 -2.2751 -0.0007 17 6 -4.8892 -3.4102 -0.0079 18 7 -6.2706 -3.3614 -0.0099 19 6 -6.8060 -3.4865 1.3587 20 6 -7.8237 -2.3944 1.0007 21 6 -6.7502 -1.9667 -0.0100 22 7 -4.2864 -4.5911 -0.0075 23 6 -2.9686 -4.6793 -0.0056 24 7 -0.0347 -2.4313 -0.0062 25 1 -0.4850 0.8402 -0.0004 26 1 3.0890 -3.6556 -0.0001 27 1 1.8257 -5.7896 -0.0015 28 1 -0.6551 -5.7121 -0.0022 29 1 -2.3323 -1.3514 -0.0031 30 1 -7.2620 -4.4559 1.5596 31 1 -6.0986 -3.1845 2.1309 32 1 -8.0006 -1.6711 1.7967 33 1 -8.7415 -2.7671 0.5460 34 1 -6.0278 -1.2592 0.3970 35 1 -7.1580 -1.6479 -0.9692 36 1 -2.4842 -5.6446 -0.0049 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242701793.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:39 Heat of formation + Delta-G solvation = 136.633772 kcal Electronic energy + Delta-G solvation = -20925.188170 eV Core-core repulsion = 17797.214422 eV Total energy + Delta-G solvation = -3127.973748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29661 -39.28993 -38.08306 -33.95669 -33.35944 -32.59847 -30.66927 -29.99682 -27.76251 -26.19957 -25.70588 -23.93966 -23.25637 -21.37170 -20.85804 -19.92901 -17.89775 -17.69450 -16.89996 -15.89604 -15.83865 -15.07958 -14.71596 -14.60995 -14.23972 -14.01463 -13.48408 -13.04677 -13.03091 -12.58091 -12.37733 -12.21426 -12.03955 -11.47899 -11.33085 -11.18803 -10.92210 -10.86995 -10.77804 -10.47686 -10.41457 -10.02828 -9.98977 -9.53852 -9.03629 -8.63305 -8.23305 -7.81243 -7.42802 -6.59245 -4.68107 1.01340 1.55935 2.64527 2.88505 3.02383 3.06037 3.09114 3.52529 3.84221 4.07894 4.28906 4.56854 4.64223 4.71871 4.97877 5.08221 5.22043 5.33126 5.45010 5.53870 5.63497 5.66114 5.74460 5.81299 5.94970 6.03452 6.08760 6.29233 6.40806 6.56532 6.70211 6.79403 6.90670 7.08850 7.12222 7.37329 7.50633 7.54868 7.84973 8.06440 8.46005 8.50309 8.74549 9.83921 10.14559 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.004823 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.677201 B = 5804.596413 C = 7186.010365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.721 5.721 2 C 0.071 3.929 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.427 4.427 8 H 0.086 0.914 9 C 0.257 3.743 10 C -0.266 4.266 11 C -0.057 4.057 12 C -0.298 4.298 13 C 0.181 3.819 14 C -0.129 4.129 15 C 0.196 3.804 16 N -0.549 5.549 17 C 0.431 3.569 18 N -0.415 5.415 19 C 0.023 3.977 20 C -0.148 4.148 21 C 0.012 3.988 22 N -0.516 5.516 23 C 0.163 3.837 24 N -0.470 5.470 25 H 0.274 0.726 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.197 0.803 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.812 -1.823 2.185 9.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.343 5.343 2 C -0.154 4.154 3 Si 0.734 3.266 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.458 4.458 8 H 0.104 0.896 9 C 0.132 3.868 10 C -0.289 4.289 11 C -0.081 4.081 12 C -0.322 4.322 13 C 0.036 3.964 14 C -0.135 4.135 15 C 0.029 3.971 16 N -0.267 5.267 17 C 0.075 3.925 18 N -0.137 5.137 19 C -0.105 4.105 20 C -0.186 4.186 21 C -0.117 4.117 22 N -0.232 5.232 23 C -0.005 4.005 24 N -0.183 5.183 25 H 0.085 0.915 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.213 0.787 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.570 -1.298 1.648 10.776 hybrid contribution 2.285 0.164 0.380 2.322 sum -8.285 -1.134 2.028 8.605 Atomic orbital electron populations 1.70026 1.07377 1.27937 1.28914 1.26032 0.94909 1.01183 0.93252 0.86232 0.80810 0.80919 0.78675 1.18386 1.19736 1.19748 1.19670 0.94416 0.89237 1.42513 0.89560 1.18486 0.87581 0.92137 0.88600 1.21836 0.98973 0.93488 1.14579 1.20789 0.93692 0.96859 0.96765 1.21145 0.94735 0.96473 1.19854 1.19290 0.90109 0.90524 0.96504 1.20543 0.95041 0.95026 1.02865 1.23813 0.87571 0.99891 0.85782 1.68349 1.10046 1.30439 1.17877 1.21733 0.92549 0.85109 0.93077 1.66011 1.03070 1.21290 1.23283 1.23664 0.96654 1.01135 0.89061 1.23178 0.97663 0.98202 0.99527 1.23824 0.96496 0.90384 1.00962 1.67974 1.11269 1.27451 1.16489 1.23282 0.87877 0.98872 0.90480 1.68670 1.07708 1.24939 1.16986 0.91488 0.87998 0.88151 0.88354 0.78674 0.88964 0.91047 0.90028 0.88725 0.87784 0.89505 0.81215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.68 11.23 55.55 0.62 -17.06 16 2 C 0.07 1.70 5.50 -17.35 -0.10 1.61 16 3 Si 0.91 17.66 29.56 -169.99 -5.02 12.63 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 7 C -0.43 -10.76 9.14 -37.73 -0.34 -11.11 16 8 H 0.09 2.04 7.85 -52.48 -0.41 1.63 16 9 C 0.26 6.64 6.55 -85.01 -0.56 6.08 16 10 C -0.27 -6.15 9.83 -38.64 -0.38 -6.53 16 11 C -0.06 -1.20 10.15 -39.40 -0.40 -1.60 16 12 C -0.30 -6.30 9.50 -38.78 -0.37 -6.67 16 13 C 0.18 4.18 6.74 -82.94 -0.56 3.62 16 14 C -0.13 -2.68 5.91 -104.61 -0.62 -3.30 16 15 C 0.20 4.07 10.85 -16.85 -0.18 3.89 16 16 N -0.55 -10.55 8.16 -13.67 -0.11 -10.66 16 17 C 0.43 7.96 6.77 -322.86 -2.18 5.78 16 18 N -0.41 -6.49 6.51 -184.91 -1.20 -7.69 16 19 C 0.02 0.28 7.66 -7.53 -0.06 0.22 16 20 C -0.15 -1.45 8.47 -26.20 -0.22 -1.67 16 21 C 0.01 0.16 7.36 -7.53 -0.06 0.10 16 22 N -0.52 -9.74 10.45 -13.68 -0.14 -9.88 16 23 C 0.16 3.00 10.68 -16.86 -0.18 2.82 16 24 N -0.47 -12.05 7.01 -7.69 -0.05 -12.11 16 25 H 0.27 6.09 8.29 -40.82 -0.34 5.75 16 26 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 27 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.10 1.77 6.26 -52.48 -0.33 1.44 16 29 H 0.20 4.32 7.39 -52.49 -0.39 3.93 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.48 6.61 -51.93 -0.34 1.13 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.17 2.67 6.29 -52.49 -0.33 2.34 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -28.08 308.60 -11.35 -39.43 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -3.88 Total: 7.44 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -6.20 Total: -6.76 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.89 Total: -57.39 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.02 Total: 12.63 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.08 -11.35 -39.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242701793.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.064 kcal (2) G-P(sol) polarization free energy of solvation -28.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds