Wall clock time and date at job start Tue Mar 31 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30708 * 1 3 3 Si 1.86801 * 120.00393 * 2 1 4 4 H 1.48506 * 109.46790 * 270.00220 * 3 2 1 5 5 H 1.48500 * 109.46732 * 29.99856 * 3 2 1 6 6 H 1.48488 * 109.47453 * 149.99940 * 3 2 1 7 7 C 1.40153 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00253 * 164.70061 * 7 2 1 9 9 C 1.40876 * 119.99967 * 344.69709 * 7 2 1 10 10 C 1.41138 * 121.11587 * 334.83567 * 9 7 2 11 11 C 1.36433 * 119.11641 * 180.27363 * 10 9 7 12 12 N 1.32235 * 121.52714 * 359.70576 * 11 10 9 13 13 C 1.31643 * 122.50981 * 0.02562 * 12 11 10 14 14 C 1.39379 * 120.65344 * 359.97438 * 13 12 11 15 15 C 1.47753 * 120.79173 * 179.97438 * 14 13 12 16 16 C 1.40115 * 120.87197 * 129.72352 * 15 14 13 17 17 N 1.32026 * 118.99905 * 179.71354 * 16 15 14 18 18 C 1.32616 * 120.90253 * 0.57168 * 17 16 15 19 19 N 1.38182 * 119.03151 * 179.68045 * 18 17 16 20 20 C 1.47483 * 110.99881 * 264.04942 * 19 18 17 21 21 C 1.53510 * 87.93319 * 138.70584 * 20 19 18 22 22 C 1.47483 * 110.99898 * 0.02562 * 19 18 17 23 23 N 1.32613 * 121.93392 * 359.69820 * 18 17 16 24 24 C 1.32016 * 120.90857 * 0.02562 * 23 18 17 25 25 H 0.96996 * 119.99613 * 359.97438 * 1 2 3 26 26 H 1.08008 * 120.44092 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.24210 * 179.72588 * 11 10 9 28 28 H 1.08003 * 119.67482 * 180.02562 * 13 12 11 29 29 H 1.07997 * 120.50542 * 359.97045 * 16 15 14 30 30 H 1.09000 * 113.47580 * 253.46611 * 20 19 18 31 31 H 1.08997 * 113.47363 * 23.93610 * 20 19 18 32 32 H 1.09003 * 114.17044 * 220.33009 * 21 20 19 33 33 H 1.09001 * 114.34731 * 87.63712 * 21 20 19 34 34 H 1.08993 * 113.47998 * 336.06252 * 22 19 18 35 35 H 1.09002 * 113.47711 * 106.47696 * 22 19 18 36 36 H 1.08003 * 120.50151 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.4886 2.0463 -1.4002 5 1 1.4386 2.6526 0.7000 6 1 3.5386 1.4401 0.7000 7 6 2.0078 -1.2138 0.0005 8 1 3.0591 -1.2305 -0.2462 9 6 1.3409 -2.4120 0.3231 10 6 0.1827 -2.4077 1.1297 11 6 -0.4276 -3.5926 1.4213 12 7 0.0377 -4.7417 0.9612 13 6 1.1092 -4.8173 0.2001 14 6 1.8089 -3.6663 -0.1582 15 6 3.0122 -3.7477 -1.0118 16 6 3.1449 -2.9364 -2.1465 17 7 4.2383 -3.0355 -2.8798 18 6 5.1965 -3.8952 -2.5612 19 7 6.3216 -3.9715 -3.3597 20 6 6.1979 -5.0625 -4.3444 21 6 6.8214 -4.1203 -5.3837 22 6 6.2367 -3.0216 -4.4847 23 7 5.1063 -4.6840 -1.4991 24 6 4.0477 -4.6425 -0.7114 25 1 -0.4849 0.8400 0.0004 26 1 -0.2129 -1.4792 1.5143 27 1 -1.3114 -3.5921 2.0420 28 1 1.4490 -5.7805 -0.1508 29 1 2.3665 -2.2376 -2.4149 30 1 6.8197 -5.9276 -4.1144 31 1 5.1653 -5.3317 -4.5666 32 1 6.3637 -4.1795 -6.3712 33 1 7.9108 -4.1407 -5.4124 34 1 5.2146 -2.7462 -4.7444 35 1 6.8908 -2.1568 -4.3731 36 1 3.9810 -5.2882 0.1518 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242704241.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:28 Heat of formation + Delta-G solvation = 123.586220 kcal Electronic energy + Delta-G solvation = -21178.654949 eV Core-core repulsion = 18050.115416 eV Total energy + Delta-G solvation = -3128.539533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18961 -39.24863 -38.20795 -34.45010 -33.22937 -32.92172 -30.59953 -29.77772 -27.43080 -26.19581 -25.97987 -23.86045 -23.02833 -21.68130 -20.78270 -19.89515 -17.90998 -17.66511 -17.04204 -15.88737 -15.74858 -15.19538 -14.69021 -14.63157 -14.41413 -14.31732 -13.25257 -13.04887 -12.90434 -12.67245 -12.47700 -12.36388 -12.01415 -11.64260 -11.52238 -11.39851 -11.25224 -10.83435 -10.72397 -10.50282 -10.29131 -9.97415 -9.87962 -9.63022 -8.73642 -8.66934 -8.19768 -8.05076 -7.53509 -7.08788 -4.85000 1.26955 1.65081 2.54649 2.65153 2.89638 2.94068 3.07874 3.62122 3.67522 4.15077 4.35678 4.40683 4.63693 4.80843 5.02993 5.22930 5.35423 5.36840 5.49444 5.56552 5.65598 5.67970 5.75806 5.84389 5.92085 5.99720 6.11591 6.20546 6.53571 6.63159 6.70859 6.75033 6.92784 7.08160 7.18316 7.26407 7.51684 7.69349 7.83943 8.18640 8.44417 8.47715 8.58579 9.41451 9.77477 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.015870 B = 0.005881 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.886747 B = 4759.997111 C = 6211.087348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.080 3.920 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.441 4.441 8 H 0.083 0.917 9 C 0.148 3.852 10 C -0.204 4.204 11 C 0.084 3.916 12 N -0.575 5.575 13 C 0.137 3.863 14 C -0.237 4.237 15 C -0.082 4.082 16 C 0.173 3.827 17 N -0.544 5.544 18 C 0.415 3.585 19 N -0.413 5.413 20 C 0.022 3.978 21 C -0.148 4.148 22 C 0.013 3.987 23 N -0.510 5.510 24 C 0.140 3.860 25 H 0.288 0.712 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.173 0.827 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.340 -2.139 -6.653 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.471 4.471 8 H 0.101 0.899 9 C 0.141 3.859 10 C -0.226 4.226 11 C -0.063 4.063 12 N -0.289 5.289 13 C -0.023 4.023 14 C -0.244 4.244 15 C -0.087 4.087 16 C 0.006 3.994 17 N -0.262 5.262 18 C 0.059 3.941 19 N -0.135 5.135 20 C -0.106 4.106 21 C -0.186 4.186 22 C -0.116 4.116 23 N -0.225 5.225 24 C -0.027 4.027 25 H 0.100 0.900 26 H 0.146 0.854 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.190 0.810 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.009 -2.771 -6.471 9.934 hybrid contribution -0.738 1.784 0.130 1.935 sum 6.271 -0.986 -6.342 8.973 Atomic orbital electron populations 1.69726 1.07772 1.30248 1.31812 1.26022 0.94798 1.01751 0.91684 0.86255 0.80747 0.79899 0.79851 1.18882 1.19605 1.18179 1.19570 0.97379 0.90602 1.39571 0.89934 1.17707 0.90197 0.90973 0.87073 1.21930 0.99812 0.98415 1.02453 1.21759 0.98092 0.88757 0.97666 1.67342 1.15691 1.29132 1.16750 1.22090 0.91222 0.95572 0.93375 1.19194 1.00605 0.95420 1.09226 1.20355 0.96000 0.96396 0.95952 1.23423 0.92886 0.94504 0.88573 1.68175 1.02461 1.22546 1.32998 1.21535 0.89936 0.90377 0.92205 1.65995 1.29136 1.06855 1.11508 1.23649 1.00999 0.95692 0.90214 1.23178 1.01538 0.96263 0.97643 1.23794 1.03152 0.96301 0.88367 1.67847 1.25309 1.24807 1.04576 1.23330 0.87054 0.95752 0.96548 0.90048 0.85408 0.86186 0.86032 0.81029 0.89108 0.91186 0.90175 0.88807 0.87952 0.89649 0.81847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.70 10.91 55.56 0.61 -17.10 16 2 C 0.08 1.78 5.22 -17.31 -0.09 1.69 16 3 Si 0.91 17.25 29.59 -169.99 -5.03 12.23 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.44 -10.43 7.40 -37.87 -0.28 -10.71 16 8 H 0.08 1.97 6.73 -52.49 -0.35 1.62 16 9 C 0.15 3.55 5.60 -106.25 -0.59 2.96 16 10 C -0.20 -4.83 8.72 -39.13 -0.34 -5.17 16 11 C 0.08 1.88 11.08 -18.03 -0.20 1.68 16 12 N -0.58 -13.05 10.32 -13.36 -0.14 -13.19 16 13 C 0.14 2.93 10.74 -17.21 -0.18 2.75 16 14 C -0.24 -5.23 5.58 -104.04 -0.58 -5.81 16 15 C -0.08 -1.65 4.99 -104.60 -0.52 -2.17 16 16 C 0.17 3.45 9.41 -16.76 -0.16 3.29 16 17 N -0.54 -10.37 8.16 -13.60 -0.11 -10.48 16 18 C 0.42 7.77 6.76 -322.82 -2.18 5.59 16 19 N -0.41 -6.63 6.50 -184.87 -1.20 -7.83 16 20 C 0.02 0.28 7.66 -7.52 -0.06 0.23 16 21 C -0.15 -1.49 8.47 -26.19 -0.22 -1.71 16 22 C 0.01 0.17 7.36 -7.51 -0.06 0.11 16 23 N -0.51 -9.83 10.45 -13.60 -0.14 -9.97 16 24 C 0.14 2.62 10.88 -16.77 -0.18 2.44 16 25 H 0.29 5.99 8.29 -40.82 -0.34 5.65 16 26 H 0.13 3.07 6.23 -52.48 -0.33 2.74 16 27 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 28 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 29 H 0.17 3.45 7.48 -52.49 -0.39 3.06 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.46 6.61 -51.93 -0.34 1.12 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.16 2.69 8.06 -52.48 -0.42 2.26 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -26.71 307.11 -10.96 -37.67 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -3.92 Total: 8.89 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -5.65 Total: -4.84 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.99 Total: -58.57 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.71 -10.96 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242704241.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.255 kcal (2) G-P(sol) polarization free energy of solvation -26.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds