Wall clock time and date at job start Tue Mar 31 2020 05:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21275 * 120.00013 * 2 1 4 4 N 1.34770 * 120.00624 * 180.02562 * 2 1 3 5 5 C 1.39183 * 120.00616 * 185.66086 * 4 2 1 6 6 C 1.39262 * 119.53630 * 185.64750 * 5 4 2 7 7 C 1.37976 * 119.26388 * 179.71378 * 6 5 4 8 8 C 1.40274 * 118.36227 * 0.52314 * 7 6 5 9 9 C 1.47771 * 120.49092 * 179.73470 * 8 7 6 10 10 C 1.39232 * 120.33982 * 309.66518 * 9 8 7 11 11 C 1.38033 * 119.98388 * 180.02562 * 10 9 8 12 12 C 1.38962 * 120.67790 * 0.02562 * 11 10 9 13 13 C 1.36409 * 120.70210 * 0.02562 * 12 11 10 14 14 C 1.40763 * 119.98917 * 359.97438 * 13 12 11 15 15 C 1.40847 * 120.33830 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00113 * 146.93765 * 15 14 13 17 17 C 1.40044 * 119.99541 * 326.94240 * 15 14 13 18 18 N 1.30789 * 120.00327 * 353.44138 * 17 15 14 19 19 Si 1.86799 * 120.00013 * 173.44372 * 17 15 14 20 20 H 1.48501 * 109.47487 * 89.99536 * 19 17 15 21 21 H 1.48503 * 109.47382 * 210.00040 * 19 17 15 22 22 H 1.48508 * 109.46873 * 329.99708 * 19 17 15 23 23 C 1.39594 * 119.01177 * 359.45051 * 8 7 6 24 24 N 1.31674 * 120.63450 * 0.30444 * 23 8 7 25 25 H 1.09005 * 109.46551 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47359 * 299.99737 * 1 2 3 27 27 H 1.08997 * 109.47528 * 60.00416 * 1 2 3 28 28 H 0.97006 * 119.99619 * 5.65202 * 4 2 1 29 29 H 1.08009 * 120.36699 * 359.96965 * 6 5 4 30 30 H 1.07998 * 120.82158 * 180.26786 * 7 6 5 31 31 H 1.08008 * 120.00927 * 0.05005 * 10 9 8 32 32 H 1.07992 * 119.65984 * 180.28710 * 11 10 9 33 33 H 1.07994 * 119.65003 * 179.97438 * 12 11 10 34 34 H 1.07999 * 120.00759 * 179.97438 * 13 12 11 35 35 H 0.97001 * 120.00073 * 180.02562 * 18 17 15 36 36 H 1.08003 * 119.67837 * 180.27639 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5677 -1.1701 0.1184 6 6 4.2644 -2.3699 -0.0017 7 6 5.6395 -2.3655 0.1112 8 6 6.2842 -1.1438 0.3554 9 6 7.7546 -1.0857 0.4905 10 6 8.4166 -1.9564 1.3520 11 6 9.7903 -1.8954 1.4728 12 6 10.5260 -0.9704 0.7420 13 6 9.9058 -0.1036 -0.1094 14 6 8.5062 -0.1406 -0.2549 15 6 7.8583 0.7514 -1.1314 16 1 6.9663 0.4413 -1.6553 17 6 8.3709 2.0404 -1.3236 18 7 9.3731 2.4609 -0.5961 19 14 7.6231 3.1593 -2.6191 20 1 6.5258 3.9550 -2.0123 21 1 8.6672 4.0756 -3.1441 22 1 7.0819 2.3368 -3.7308 23 6 5.5165 0.0172 0.4629 24 7 4.2061 -0.0315 0.3434 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.6995 -2.0051 -0.0836 29 1 3.7346 -3.2930 -0.1852 30 1 6.2053 -3.2806 0.0181 31 1 7.8555 -2.6796 1.9253 32 1 10.2989 -2.5764 2.1391 33 1 11.6000 -0.9370 0.8497 34 1 10.4886 0.6110 -0.6716 35 1 9.7279 3.3538 -0.7290 36 1 6.0021 0.9643 0.6464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245515020.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:33 Heat of formation + Delta-G solvation = 24.233968 kcal Electronic energy + Delta-G solvation = -21009.692015 eV Core-core repulsion = 17844.551494 eV Total energy + Delta-G solvation = -3165.140521 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29296 -38.72896 -37.35192 -34.60329 -33.70081 -32.15354 -31.14222 -29.90161 -29.48950 -27.43825 -25.32495 -23.41869 -22.74377 -20.96498 -20.22621 -19.85404 -17.82517 -17.30291 -16.73933 -15.77412 -15.35798 -15.15153 -14.86374 -14.21915 -14.11962 -13.65642 -13.46119 -13.12374 -13.09708 -12.66747 -12.61465 -12.26694 -12.14173 -11.72053 -11.53706 -11.20771 -11.09086 -10.73894 -10.46581 -10.30955 -9.92621 -9.65449 -9.57837 -9.26342 -9.19565 -8.54775 -7.96714 -7.39968 -7.09414 -6.73075 -4.42646 1.59372 1.94322 2.71851 2.84950 3.08170 3.10175 3.13169 3.16149 3.23538 3.96050 4.55874 4.63666 4.66459 4.96831 5.22316 5.29187 5.39824 5.48545 5.61212 5.71766 5.77395 5.87281 6.13462 6.31953 6.38578 6.51561 6.62182 6.74752 6.92825 7.07643 7.13068 7.29898 7.32876 7.50651 7.54763 7.80837 7.98156 8.01979 8.20491 8.30516 8.55426 8.79435 8.81690 8.88614 10.17729 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.006116 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.768558 B = 4577.403060 C = 6172.670096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.494 3.506 3 O -0.478 6.478 4 N -0.663 5.663 5 C 0.318 3.682 6 C -0.207 4.207 7 C -0.068 4.068 8 C -0.052 4.052 9 C -0.177 4.177 10 C -0.075 4.075 11 C -0.236 4.236 12 C -0.104 4.104 13 C -0.148 4.148 14 C 0.132 3.868 15 C -0.455 4.455 16 H 0.078 0.922 17 C 0.077 3.923 18 N -0.798 5.798 19 Si 0.906 3.094 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.262 1.262 23 C 0.149 3.851 24 N -0.479 5.479 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.411 0.589 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.281 0.719 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.539 -7.381 0.271 13.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.280 3.720 3 O -0.348 6.348 4 N -0.311 5.311 5 C 0.089 3.911 6 C -0.230 4.230 7 C -0.094 4.094 8 C -0.055 4.055 9 C -0.179 4.179 10 C -0.093 4.093 11 C -0.255 4.255 12 C -0.123 4.123 13 C -0.167 4.167 14 C 0.129 3.871 15 C -0.484 4.484 16 H 0.096 0.904 17 C -0.141 4.141 18 N -0.424 5.424 19 Si 0.730 3.270 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.186 1.186 23 C -0.010 4.010 24 N -0.192 5.192 25 H 0.092 0.908 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.246 0.754 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.138 0.862 35 H 0.092 0.908 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.550 -5.566 0.384 12.827 hybrid contribution -0.015 -0.729 -0.647 0.975 sum -11.565 -6.294 -0.264 13.169 Atomic orbital electron populations 1.21849 0.91585 1.03972 1.05309 1.20967 0.90349 0.83740 0.76984 1.90864 1.69850 1.30413 1.43638 1.43565 1.04685 1.10081 1.72731 1.18398 0.84124 0.90430 0.98161 1.21182 0.95104 0.96862 1.09901 1.21467 0.92928 0.98250 0.96723 1.19771 0.94660 0.92864 0.98243 1.18504 0.89246 1.05441 1.04756 1.20557 0.93943 0.97251 0.97574 1.20306 0.93826 1.04283 1.07102 1.20521 0.97639 0.96468 0.97647 1.21100 0.94731 0.99660 1.01198 1.17557 0.91309 0.88978 0.89223 1.19479 1.10223 0.96448 1.22297 0.90354 1.25864 0.93927 0.98931 0.95330 1.69748 1.20518 1.18593 1.33500 0.86317 0.79544 0.79885 0.81225 1.19002 1.20128 1.18592 1.23059 0.86625 0.98969 0.92314 1.67533 1.10936 1.26040 1.14685 0.90763 0.88705 0.88798 0.75357 0.85873 0.85266 0.89222 0.89333 0.89372 0.86229 0.90764 0.81778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.39 36.00 0.37 -1.01 16 2 C 0.49 7.15 7.88 -10.99 -0.09 7.06 16 3 O -0.48 -9.76 15.39 5.56 0.09 -9.67 16 4 N -0.66 -8.85 5.38 -11.41 -0.06 -8.92 16 5 C 0.32 5.64 7.41 -154.74 -1.15 4.49 16 6 C -0.21 -3.24 9.92 -39.30 -0.39 -3.63 16 7 C -0.07 -1.21 9.69 -38.91 -0.38 -1.59 16 8 C -0.05 -1.12 4.96 -104.73 -0.52 -1.64 16 9 C -0.18 -4.14 5.54 -104.23 -0.58 -4.72 16 10 C -0.07 -1.62 9.54 -39.29 -0.37 -2.00 16 11 C -0.24 -5.09 10.03 -39.39 -0.40 -5.48 16 12 C -0.10 -2.36 9.96 -39.97 -0.40 -2.76 16 13 C -0.15 -3.70 8.57 -39.29 -0.34 -4.04 16 14 C 0.13 3.37 5.52 -106.55 -0.59 2.78 16 15 C -0.45 -11.73 6.92 -37.92 -0.26 -12.00 16 16 H 0.08 2.05 6.97 -52.49 -0.37 1.68 16 17 C 0.08 1.92 5.30 -17.32 -0.09 1.83 16 18 N -0.80 -20.28 10.92 55.55 0.61 -19.68 16 19 Si 0.91 19.49 29.57 -169.99 -5.03 14.46 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 23 C 0.15 3.34 9.33 -17.11 -0.16 3.18 16 24 N -0.48 -10.39 7.89 -12.02 -0.09 -10.49 16 25 H 0.07 0.37 7.92 -51.93 -0.41 -0.04 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.41 3.45 8.54 -40.82 -0.35 3.10 16 29 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 30 H 0.13 2.05 8.06 -52.49 -0.42 1.62 16 31 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 32 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.12 3.10 6.40 -52.49 -0.34 2.76 16 35 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 36 H 0.17 3.95 7.31 -52.48 -0.38 3.56 16 LS Contribution 313.41 15.07 4.72 4.72 Total: -1.00 -31.63 313.41 -9.03 -40.66 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -3.94 Total: 8.42 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -5.33 Total: -19.51 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.45 Total: -39.08 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.63 -9.03 -40.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245515020.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.895 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds