Wall clock time and date at job start Tue Mar 31 2020 05:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21275 * 120.00013 * 2 1 4 4 N 1.34770 * 120.00624 * 180.02562 * 2 1 3 5 5 C 1.39183 * 120.00616 * 185.66086 * 4 2 1 6 6 C 1.39262 * 119.53630 * 185.64750 * 5 4 2 7 7 C 1.37976 * 119.26388 * 179.71378 * 6 5 4 8 8 C 1.40274 * 118.36227 * 0.52314 * 7 6 5 9 9 C 1.47771 * 120.49092 * 179.73470 * 8 7 6 10 10 C 1.39232 * 120.33982 * 309.66518 * 9 8 7 11 11 C 1.38033 * 119.98388 * 180.02562 * 10 9 8 12 12 C 1.38962 * 120.67790 * 0.02562 * 11 10 9 13 13 C 1.36409 * 120.70210 * 0.02562 * 12 11 10 14 14 C 1.40763 * 119.98917 * 359.97438 * 13 12 11 15 15 C 1.40847 * 120.33830 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00113 * 146.93765 * 15 14 13 17 17 C 1.40044 * 119.99541 * 326.94240 * 15 14 13 18 18 N 1.30789 * 120.00327 * 353.44138 * 17 15 14 19 19 Si 1.86799 * 120.00013 * 173.44372 * 17 15 14 20 20 H 1.48501 * 109.47487 * 89.99536 * 19 17 15 21 21 H 1.48503 * 109.47382 * 210.00040 * 19 17 15 22 22 H 1.48508 * 109.46873 * 329.99708 * 19 17 15 23 23 C 1.39594 * 119.01177 * 359.45051 * 8 7 6 24 24 N 1.31674 * 120.63450 * 0.30444 * 23 8 7 25 25 H 1.09005 * 109.46551 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47359 * 299.99737 * 1 2 3 27 27 H 1.08997 * 109.47528 * 60.00416 * 1 2 3 28 28 H 0.97006 * 119.99619 * 5.65202 * 4 2 1 29 29 H 1.08009 * 120.36699 * 359.96965 * 6 5 4 30 30 H 1.07998 * 120.82158 * 180.26786 * 7 6 5 31 31 H 1.08008 * 120.00927 * 0.05005 * 10 9 8 32 32 H 1.07992 * 119.65984 * 180.28710 * 11 10 9 33 33 H 1.07994 * 119.65003 * 179.97438 * 12 11 10 34 34 H 1.07999 * 120.00759 * 179.97438 * 13 12 11 35 35 H 0.97001 * 120.00073 * 180.02562 * 18 17 15 36 36 H 1.08003 * 119.67837 * 180.27639 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5677 -1.1701 0.1184 6 6 4.2644 -2.3699 -0.0017 7 6 5.6395 -2.3655 0.1112 8 6 6.2842 -1.1438 0.3554 9 6 7.7546 -1.0857 0.4905 10 6 8.4166 -1.9564 1.3520 11 6 9.7903 -1.8954 1.4728 12 6 10.5260 -0.9704 0.7420 13 6 9.9058 -0.1036 -0.1094 14 6 8.5062 -0.1406 -0.2549 15 6 7.8583 0.7514 -1.1314 16 1 6.9663 0.4413 -1.6553 17 6 8.3709 2.0404 -1.3236 18 7 9.3731 2.4609 -0.5961 19 14 7.6231 3.1593 -2.6191 20 1 6.5258 3.9550 -2.0123 21 1 8.6672 4.0756 -3.1441 22 1 7.0819 2.3368 -3.7308 23 6 5.5165 0.0172 0.4629 24 7 4.2061 -0.0315 0.3434 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 1.6995 -2.0051 -0.0836 29 1 3.7346 -3.2930 -0.1852 30 1 6.2053 -3.2806 0.0181 31 1 7.8555 -2.6796 1.9253 32 1 10.2989 -2.5764 2.1391 33 1 11.6000 -0.9370 0.8497 34 1 10.4886 0.6110 -0.6716 35 1 9.7279 3.3538 -0.7290 36 1 6.0021 0.9643 0.6464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245515020.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:33 Heat of formation + Delta-G solvation = 5.167236 kcal Electronic energy + Delta-G solvation = -21010.518810 eV Core-core repulsion = 17844.551494 eV Total energy + Delta-G solvation = -3165.967316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.64141 -40.16251 -39.03206 -35.94298 -35.54863 -33.69517 -32.59018 -31.41171 -30.85794 -28.90877 -27.15891 -24.84527 -24.27792 -22.70829 -21.71146 -21.31952 -19.24621 -19.03261 -17.93482 -17.48858 -16.81631 -16.54924 -16.33691 -15.90314 -15.43950 -15.27584 -14.88514 -14.59060 -14.54052 -14.39255 -13.80280 -13.56336 -13.35032 -13.12598 -13.06355 -12.95176 -12.87346 -12.51251 -12.19550 -11.77814 -11.40015 -11.35296 -11.19987 -11.11787 -10.67246 -10.01813 -9.54142 -9.22706 -8.77886 -8.54373 -6.34377 0.10032 0.48564 0.99331 1.16838 1.30317 1.40842 1.46266 1.77114 2.05222 2.16226 2.76281 3.06138 3.52720 3.70772 3.95666 4.11450 4.23852 4.30090 4.38807 4.49282 4.55664 4.66599 4.67830 4.81395 4.94930 5.07543 5.14050 5.16013 5.29153 5.35683 5.40185 5.56932 5.70423 5.91669 6.04505 6.11471 6.19502 6.36787 6.39852 6.69094 6.93237 7.01766 7.10010 7.48905 8.34142 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014940 B = 0.006116 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.768558 B = 4577.403060 C = 6172.670096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.486 3.514 3 O -0.549 6.549 4 N -0.645 5.645 5 C 0.311 3.689 6 C -0.182 4.182 7 C -0.060 4.060 8 C -0.078 4.078 9 C -0.177 4.177 10 C -0.080 4.080 11 C -0.227 4.227 12 C -0.110 4.110 13 C -0.173 4.173 14 C 0.099 3.901 15 C -0.476 4.476 16 H 0.061 0.939 17 C 0.041 3.959 18 N -0.829 5.829 19 Si 0.961 3.039 20 H -0.275 1.275 21 H -0.258 1.258 22 H -0.265 1.265 23 C 0.127 3.873 24 N -0.515 5.515 25 H 0.117 0.883 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.438 0.562 29 H 0.182 0.818 30 H 0.158 0.842 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.286 0.714 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.836 -10.780 0.537 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.275 3.725 3 O -0.423 6.423 4 N -0.296 5.296 5 C 0.080 3.920 6 C -0.205 4.205 7 C -0.086 4.086 8 C -0.081 4.081 9 C -0.179 4.179 10 C -0.098 4.098 11 C -0.246 4.246 12 C -0.129 4.129 13 C -0.193 4.193 14 C 0.097 3.903 15 C -0.507 4.507 16 H 0.079 0.921 17 C -0.173 4.173 18 N -0.456 5.456 19 Si 0.784 3.216 20 H -0.201 1.201 21 H -0.182 1.182 22 H -0.189 1.189 23 C -0.030 4.030 24 N -0.229 5.229 25 H 0.136 0.864 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.279 0.721 29 H 0.199 0.801 30 H 0.175 0.825 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.862 -9.017 0.649 16.550 hybrid contribution 0.547 0.129 -0.628 0.843 sum -13.315 -8.888 0.021 16.009 Atomic orbital electron populations 1.21873 0.86134 1.07130 1.06080 1.22218 0.92808 0.82759 0.74734 1.90851 1.71749 1.32922 1.46747 1.43600 1.02962 1.11520 1.71479 1.18928 0.86081 0.90172 0.96808 1.21679 0.94248 0.98071 1.06474 1.21785 0.94164 0.97494 0.95169 1.19740 0.93705 0.94127 1.00554 1.18840 0.90566 1.04520 1.03989 1.20924 0.94384 0.97426 0.97089 1.20746 0.94004 1.03637 1.06242 1.20812 0.99052 0.96009 0.97007 1.21061 0.94755 1.00726 1.02752 1.17866 0.91941 0.90216 0.90297 1.19426 1.10165 0.97494 1.23593 0.92072 1.26445 0.94322 0.99730 0.96786 1.69792 1.21812 1.19180 1.34865 0.85501 0.78799 0.78328 0.78967 1.20081 1.18187 1.18887 1.22501 0.87460 0.98154 0.94931 1.67420 1.10609 1.28783 1.16112 0.86422 0.87905 0.87842 0.72116 0.80063 0.82476 0.85987 0.85818 0.87098 0.88184 0.90344 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.39 71.23 0.74 -1.23 16 2 C 0.49 13.25 7.88 87.66 0.69 13.94 16 3 O -0.55 -22.88 15.39 -3.01 -0.05 -22.92 16 4 N -0.65 -15.25 5.38 -308.39 -1.66 -16.91 16 5 C 0.31 10.47 7.41 133.01 0.99 11.46 16 6 C -0.18 -4.96 9.92 22.45 0.22 -4.74 16 7 C -0.06 -1.99 9.69 22.70 0.22 -1.77 16 8 C -0.08 -3.38 4.96 -19.93 -0.10 -3.47 16 9 C -0.18 -8.40 5.54 -19.61 -0.11 -8.51 16 10 C -0.08 -3.33 9.54 22.46 0.21 -3.12 16 11 C -0.23 -9.31 10.03 22.39 0.22 -9.09 16 12 C -0.11 -4.99 9.96 22.02 0.22 -4.77 16 13 C -0.17 -9.06 8.57 22.46 0.19 -8.87 16 14 C 0.10 5.31 5.52 -21.11 -0.12 5.19 16 15 C -0.48 -26.32 6.92 23.35 0.16 -26.16 16 16 H 0.06 3.46 6.97 -2.91 -0.02 3.44 16 17 C 0.04 2.18 5.30 85.29 0.45 2.63 16 18 N -0.83 -44.81 10.92 21.84 0.24 -44.57 16 19 Si 0.96 42.44 29.57 68.60 2.03 44.46 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 23 C 0.13 6.03 9.33 85.04 0.79 6.82 16 24 N -0.51 -23.03 7.89 -191.93 -1.51 -24.54 16 25 H 0.12 0.50 7.92 -2.38 -0.02 0.48 16 26 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.44 5.08 8.54 -92.70 -0.79 4.29 16 29 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 31 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 32 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 34 H 0.10 5.51 6.40 -2.91 -0.02 5.49 16 35 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 36 H 0.13 6.71 7.31 -2.91 -0.02 6.69 16 Total: -1.00 -76.77 313.41 4.16 -72.60 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.33 Total: 23.56 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 4.79 Total: -31.69 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -2.93 Total: -86.02 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -76.77 4.16 -72.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245515020.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.770 kcal (2) G-P(sol) polarization free energy of solvation -76.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds