Wall clock time and date at job start Tue Mar 31 2020 05:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47648 * 2 1 4 4 C 1.52999 * 109.47288 * 239.99858 * 2 1 3 5 5 C 1.52998 * 109.47415 * 175.00192 * 4 2 1 6 6 S 1.81401 * 109.47220 * 180.02562 * 5 4 2 7 7 C 1.81400 * 103.00115 * 179.97438 * 6 5 4 8 8 O 1.42103 * 109.46983 * 63.61026 * 6 5 4 9 9 N 1.46504 * 109.47208 * 120.00035 * 2 1 3 10 10 C 1.38820 * 120.00269 * 274.99827 * 9 2 1 11 11 C 1.39799 * 119.57918 * 359.97438 * 10 9 2 12 12 C 1.38604 * 119.48846 * 179.97438 * 11 10 9 13 13 C 1.38388 * 118.67866 * 0.25056 * 12 11 10 14 14 C 1.40553 * 119.15049 * 359.48922 * 13 12 11 15 15 C 1.41321 * 119.78834 * 180.25016 * 14 13 12 16 16 H 1.08003 * 119.99497 * 353.95426 * 15 14 13 17 17 C 1.40016 * 120.00201 * 173.95383 * 15 14 13 18 18 N 1.30741 * 120.00273 * 6.29033 * 17 15 14 19 19 Si 1.86808 * 119.99985 * 186.28481 * 17 15 14 20 20 H 1.48500 * 109.46547 * 94.98765 * 19 17 15 21 21 H 1.48497 * 109.47170 * 214.98750 * 19 17 15 22 22 H 1.48497 * 109.46999 * 334.98916 * 19 17 15 23 23 N 1.31952 * 119.58739 * 179.97438 * 10 9 2 24 24 H 1.09004 * 109.47370 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46964 * 300.00400 * 1 2 3 26 26 H 1.08998 * 109.46964 * 59.99601 * 1 2 3 27 27 H 1.09001 * 109.47088 * 295.00773 * 4 2 1 28 28 H 1.09003 * 109.46973 * 55.00160 * 4 2 1 29 29 H 1.08996 * 109.46904 * 299.99916 * 5 4 2 30 30 H 1.08994 * 109.47125 * 60.00278 * 5 4 2 31 31 H 1.08996 * 109.46801 * 60.00345 * 7 6 5 32 32 H 1.09001 * 109.47050 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.46553 * 299.99963 * 7 6 5 34 34 H 0.97001 * 119.99716 * 94.99740 * 9 2 1 35 35 H 1.08000 * 120.25739 * 0.02562 * 11 10 9 36 36 H 1.07999 * 120.65933 * 179.97438 * 12 11 10 37 37 H 1.07997 * 120.42208 * 179.74582 * 13 12 11 38 38 H 0.97006 * 120.00104 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 16 4.1694 -1.4679 -2.7952 7 6 5.9655 -1.2329 -2.6975 8 8 3.6694 -0.8165 -3.9549 9 7 2.0184 -0.6906 1.1962 10 6 2.1510 0.0018 2.3920 11 6 1.8165 1.3582 2.4448 12 6 1.9492 2.0476 3.6398 13 6 2.4171 1.3675 4.7505 14 6 2.7315 0.0025 4.6352 15 6 3.2054 -0.7065 5.7621 16 1 3.4179 -0.1802 6.6810 17 6 3.3995 -2.0911 5.6875 18 7 3.2612 -2.7099 4.5441 19 14 3.8561 -3.0544 7.2215 20 1 2.6272 -3.6166 7.8369 21 1 4.7771 -4.1603 6.8557 22 1 4.5270 -2.1518 8.1913 23 7 2.5911 -0.6284 3.4645 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.7516 -1.7715 -1.2056 28 1 1.6054 -0.2617 -2.1370 29 1 3.8532 0.4369 -1.3573 30 1 3.9994 -1.0729 -0.4260 31 1 6.3403 -1.6770 -1.7754 32 1 6.4418 -1.7130 -3.5523 33 1 6.1933 -0.1670 -2.7063 34 1 2.2490 -1.6318 1.1526 35 1 1.4568 1.8647 1.5614 36 1 1.6967 3.0959 3.7019 37 1 2.5353 1.8781 5.6948 38 1 3.3960 -3.6692 4.4923 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255096513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:38 Heat of formation + Delta-G solvation = -7.125893 kcal Electronic energy + Delta-G solvation = -19708.441111 eV Core-core repulsion = 16677.384676 eV Total energy + Delta-G solvation = -3031.056435 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.50112 -36.61716 -35.70501 -33.58730 -32.15788 -30.48734 -29.67535 -28.99548 -27.99107 -25.39318 -23.80960 -21.72025 -21.17066 -19.83135 -17.51544 -17.37581 -16.46383 -15.57417 -15.27100 -14.96890 -14.69642 -14.59761 -14.23290 -13.65214 -13.40227 -13.33327 -13.05238 -12.79344 -12.65449 -12.20766 -11.96922 -11.87892 -11.73490 -11.44686 -11.21295 -11.09580 -10.98886 -10.81770 -10.59242 -10.34350 -10.00671 -9.89099 -9.48057 -8.88779 -8.29360 -7.90812 -7.50476 -6.49421 -6.34198 -4.46837 1.46626 2.56019 2.87226 3.10805 3.14388 3.24280 3.30212 3.73064 3.98222 4.19255 4.80654 4.85668 4.97322 5.04251 5.11084 5.16601 5.56985 5.72005 5.73726 5.78835 5.84131 6.00908 6.07479 6.14206 6.16777 6.27999 6.51639 6.66656 6.86751 6.90698 6.97211 7.25438 7.61309 7.82165 7.93683 8.18154 8.38303 8.71140 8.80930 9.13554 10.24612 10.40249 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.004381 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.024222 B = 6389.201361 C = 7353.645776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.166 3.834 3 H 0.074 0.926 4 C -0.104 4.104 5 C -0.438 4.438 6 S 1.234 4.766 7 C -0.488 4.488 8 O -0.861 6.861 9 N -0.730 5.730 10 C 0.413 3.587 11 C -0.368 4.368 12 C -0.033 4.033 13 C -0.318 4.318 14 C 0.293 3.707 15 C -0.436 4.436 16 H 0.082 0.918 17 C 0.073 3.927 18 N -0.717 5.717 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.262 1.262 23 N -0.532 5.532 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.395 0.605 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 -3.167 -10.152 10.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.058 3.942 3 H 0.092 0.908 4 C -0.143 4.143 5 C -0.576 4.576 6 S 1.434 4.566 7 C -0.646 4.646 8 O -0.856 6.856 9 N -0.367 5.367 10 C 0.173 3.827 11 C -0.394 4.394 12 C -0.057 4.057 13 C -0.341 4.341 14 C 0.166 3.834 15 C -0.468 4.468 16 H 0.100 0.900 17 C -0.152 4.152 18 N -0.338 5.338 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.186 1.186 23 N -0.253 5.253 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.143 0.857 31 H 0.132 0.868 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.229 0.771 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.913 -4.550 -11.124 12.054 hybrid contribution 0.689 2.447 0.821 2.671 sum 1.602 -2.103 -10.304 10.637 Atomic orbital electron populations 1.22307 0.96601 1.02032 1.01743 1.20628 0.92899 0.96689 0.84008 0.90834 1.21457 0.92078 1.02107 0.98626 1.27618 1.03508 1.10366 1.16120 1.70375 0.85384 1.16421 0.84452 1.27617 1.21470 1.07081 1.08410 1.93095 1.73779 1.77873 1.40873 1.44203 1.74163 1.12061 1.06260 1.18522 0.89650 0.87567 0.86919 1.20651 1.24961 0.95303 0.98501 1.20603 0.95249 0.96908 0.92968 1.21527 1.17323 0.97167 0.98066 1.18192 0.87316 0.88001 0.89879 1.19576 1.37776 0.92187 0.97305 0.89981 1.26016 0.93927 0.98466 0.96770 1.70148 1.29815 1.09324 1.24542 0.86384 0.79056 0.79512 0.82236 1.19596 1.20227 1.18634 1.68223 1.23580 1.36058 0.97446 0.92565 0.91823 0.92826 0.90366 0.90675 0.89757 0.85670 0.86760 0.87895 0.90301 0.77050 0.89176 0.89122 0.88834 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.40 37.16 0.35 -2.01 16 2 C 0.17 2.49 2.26 -67.93 -0.15 2.33 16 3 H 0.07 1.20 6.43 -51.93 -0.33 0.86 16 4 C -0.10 -1.23 4.76 -26.73 -0.13 -1.35 16 5 C -0.44 -4.95 5.81 37.16 0.22 -4.73 16 6 S 1.23 11.39 13.80 -107.50 -1.48 9.90 16 7 C -0.49 -4.17 10.74 101.05 1.09 -3.08 16 8 O -0.86 -13.50 18.14 -35.23 -0.64 -14.14 16 9 N -0.73 -13.53 4.69 -53.91 -0.25 -13.79 16 10 C 0.41 9.72 7.63 -155.33 -1.18 8.53 16 11 C -0.37 -8.39 8.84 -38.86 -0.34 -8.73 16 12 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 13 C -0.32 -8.03 9.83 -38.65 -0.38 -8.41 16 14 C 0.29 8.05 6.54 -85.00 -0.56 7.50 16 15 C -0.44 -11.68 9.13 -37.74 -0.34 -12.02 16 16 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 17 C 0.07 1.83 5.49 -17.35 -0.10 1.74 16 18 N -0.72 -18.38 11.49 55.55 0.64 -17.75 16 19 Si 0.90 18.34 29.56 -169.99 -5.03 13.31 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 23 N -0.53 -14.23 7.92 -10.33 -0.08 -14.31 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.03 7.65 -51.93 -0.40 0.63 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.13 1.42 7.75 -51.93 -0.40 1.02 16 31 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 34 H 0.39 7.07 8.72 -40.82 -0.36 6.72 16 35 H 0.09 1.85 6.04 -52.49 -0.32 1.54 16 36 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.09 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.27 6.22 8.29 -40.82 -0.34 5.88 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -34.22 331.49 -9.36 -43.58 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -5.58 Total: 9.61 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -1.93 Total: -21.41 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.30 Total: -45.85 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.64 Total: -14.14 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Atomic # 16 Polarization: 11.39 SS G_CDS: -1.48 Total: 9.90 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.22 -9.36 -43.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.455 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds