Wall clock time and date at job start Tue Mar 31 2020 05:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81399 * 103.00098 * 2 1 4 4 H 1.08993 * 109.47055 * 55.00524 * 3 2 1 5 5 C 1.53004 * 109.47383 * 294.99987 * 3 2 1 6 6 O 1.42900 * 109.47167 * 295.00417 * 5 3 2 7 7 C 1.53000 * 109.47185 * 175.00236 * 3 2 1 8 8 H 1.09005 * 109.47246 * 59.99975 * 7 3 2 9 9 C 1.53003 * 109.47129 * 300.00139 * 7 3 2 10 10 N 1.46501 * 109.47382 * 179.97438 * 7 3 2 11 11 C 1.38822 * 119.99981 * 204.99708 * 10 7 3 12 12 C 1.39794 * 119.58827 * 0.02562 * 11 10 7 13 13 C 1.38595 * 119.49187 * 179.97438 * 12 11 10 14 14 C 1.38382 * 118.67909 * 359.97438 * 13 12 11 15 15 C 1.40555 * 119.15495 * 359.97438 * 14 13 12 16 16 C 1.41312 * 119.78654 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99836 * 359.97438 * 16 15 14 18 18 C 1.40030 * 119.99812 * 180.02562 * 16 15 14 19 19 N 1.30741 * 120.00024 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99798 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47096 * 59.99387 * 20 18 16 22 22 H 1.48505 * 109.46745 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46973 * 299.99480 * 20 18 16 24 24 N 1.31955 * 119.57837 * 180.02562 * 11 10 7 25 25 H 1.09005 * 109.46876 * 299.99842 * 1 2 3 26 26 H 1.09007 * 109.47318 * 59.99727 * 1 2 3 27 27 H 1.08993 * 109.47370 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46664 * 55.00050 * 5 3 2 29 29 H 1.08992 * 109.47028 * 174.99700 * 5 3 2 30 30 H 0.96702 * 113.99945 * 179.97438 * 6 5 3 31 31 H 1.08998 * 109.47227 * 300.00290 * 9 7 3 32 32 H 1.09006 * 109.47200 * 59.99717 * 9 7 3 33 33 H 1.09003 * 109.47247 * 179.97438 * 9 7 3 34 34 H 0.96999 * 119.99173 * 25.00162 * 10 7 3 35 35 H 1.08001 * 120.25405 * 0.24578 * 12 11 10 36 36 H 1.08005 * 120.65686 * 180.02562 * 13 12 11 37 37 H 1.08006 * 120.42240 * 179.97438 * 14 13 12 38 38 H 0.96996 * 120.00058 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4016 -1.3074 6 8 2.4729 1.8450 -2.4025 7 6 3.7370 1.9412 0.1257 8 1 4.2296 1.4545 -0.7162 9 6 4.2163 1.3070 1.4330 10 7 4.0666 3.3686 0.1251 11 6 5.3236 3.7905 -0.2862 12 6 6.2680 2.8459 -0.6986 13 6 7.5222 3.2693 -1.1094 14 6 7.8020 4.6245 -1.0987 15 6 6.8100 5.5252 -0.6742 16 6 7.0811 6.9120 -0.6585 17 1 8.0482 7.2766 -0.9717 18 6 6.0963 7.8132 -0.2359 19 7 4.9257 7.3717 0.1437 20 14 6.4545 9.6465 -0.2159 21 1 6.7906 10.1002 -1.5893 22 1 5.2571 10.3795 0.2681 23 1 7.6004 9.9170 0.6891 24 7 5.6118 5.0782 -0.2830 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.6797 2.2010 -1.4401 29 1 1.9075 3.4784 -1.2706 30 1 2.2205 2.2016 -3.2652 31 1 3.7237 1.7936 2.2748 32 1 3.9710 0.2449 1.4330 33 1 5.2956 1.4303 1.5223 34 1 3.4066 4.0188 0.4121 35 1 6.0208 1.7946 -0.7013 36 1 8.2660 2.5558 -1.4321 37 1 8.7703 4.9855 -1.4127 38 1 4.2433 7.9960 0.4361 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255096660.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:18 Heat of formation + Delta-G solvation = -10.169181 kcal Electronic energy + Delta-G solvation = -20160.403459 eV Core-core repulsion = 17129.215057 eV Total energy + Delta-G solvation = -3031.188402 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.59527 -37.34540 -35.53080 -33.43704 -31.65887 -30.29141 -29.59052 -28.40118 -27.96402 -25.32557 -23.36319 -21.67670 -21.22868 -19.85436 -17.67148 -17.14403 -16.79946 -15.71079 -15.25383 -14.94919 -14.78227 -14.45530 -14.22593 -13.68395 -13.51922 -13.31259 -12.96507 -12.77751 -12.51954 -12.32103 -11.88089 -11.80370 -11.76540 -11.24658 -11.05818 -10.97268 -10.82192 -10.55070 -10.36898 -9.98945 -9.87470 -9.68572 -9.45383 -8.84487 -7.86283 -7.60318 -7.46783 -6.46558 -6.29636 -4.43050 1.56641 2.52112 2.92269 3.10823 3.14134 3.29565 3.34395 4.00236 4.17590 4.37880 4.67505 4.83994 4.89679 4.97448 5.01441 5.32496 5.37417 5.58258 5.62492 5.77592 5.83808 6.10881 6.12817 6.22461 6.34604 6.57884 6.74122 6.90959 6.95320 7.00136 7.28216 7.65506 7.72341 7.86752 7.98659 8.19436 8.40600 8.71331 8.84280 9.16815 10.28364 10.44011 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.024006 B = 0.004461 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.080482 B = 6274.438602 C = 6833.622410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.223 6.223 3 C -0.064 4.064 4 H 0.098 0.902 5 C 0.085 3.915 6 O -0.551 6.551 7 C 0.188 3.812 8 H 0.095 0.905 9 C -0.169 4.169 10 N -0.729 5.729 11 C 0.417 3.583 12 C -0.360 4.360 13 C -0.032 4.032 14 C -0.318 4.318 15 C 0.294 3.706 16 C -0.437 4.437 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.719 5.719 20 Si 0.904 3.096 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 N -0.532 5.532 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.377 0.623 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.391 0.609 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.145 -8.836 -0.123 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.003 5.997 3 C -0.193 4.193 4 H 0.116 0.884 5 C 0.005 3.995 6 O -0.355 6.355 7 C 0.080 3.920 8 H 0.112 0.888 9 C -0.228 4.228 10 N -0.365 5.365 11 C 0.177 3.823 12 C -0.386 4.386 13 C -0.057 4.057 14 C -0.341 4.341 15 C 0.167 3.833 16 C -0.469 4.469 17 H 0.100 0.900 18 C -0.152 4.152 19 N -0.341 5.341 20 Si 0.728 3.272 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.190 1.190 24 N -0.253 5.253 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.223 0.777 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.225 0.775 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.971 -9.571 0.687 13.838 hybrid contribution -0.715 1.835 -0.536 2.041 sum -10.686 -7.735 0.151 13.193 Atomic orbital electron populations 1.23448 0.95734 1.06197 1.04597 1.86829 1.05513 1.09715 1.97691 1.23606 1.01606 0.94743 0.99354 0.88397 1.22131 0.93321 0.97264 0.86762 1.86562 1.64591 1.67537 1.16833 1.20247 0.89455 0.83488 0.98764 0.88752 1.22394 1.02467 1.00372 0.97573 1.44105 1.13438 1.04411 1.74546 1.18431 0.84381 0.90506 0.88979 1.20656 0.96848 0.97454 1.23657 1.20603 0.94833 0.94966 0.95283 1.21519 1.00999 0.93487 1.18072 1.18169 0.85735 0.93053 0.86389 1.19529 0.99466 0.89977 1.37962 0.90033 1.26021 0.94647 1.00738 0.93747 1.70145 1.02666 1.35382 1.25916 0.86462 0.78752 0.82367 0.79589 1.19052 1.20430 1.19028 1.68200 1.21254 1.10269 1.25597 0.90756 0.90762 0.88231 0.94388 0.92011 0.77698 0.92838 0.91616 0.91648 0.77474 0.88990 0.89006 0.88828 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 10.45 101.05 1.06 -0.10 16 2 S -0.22 -2.80 20.10 -107.50 -2.16 -4.97 16 3 C -0.06 -0.86 2.28 -26.73 -0.06 -0.92 16 4 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 5 C 0.09 1.10 6.35 37.16 0.24 1.34 16 6 O -0.55 -7.79 12.53 -35.23 -0.44 -8.23 16 7 C 0.19 3.12 1.64 -67.93 -0.11 3.01 16 8 H 0.09 1.78 5.85 -51.93 -0.30 1.48 16 9 C -0.17 -2.64 9.17 37.16 0.34 -2.30 16 10 N -0.73 -14.47 4.62 -53.90 -0.25 -14.72 16 11 C 0.42 10.20 7.63 -155.33 -1.18 9.01 16 12 C -0.36 -8.52 8.84 -38.87 -0.34 -8.87 16 13 C -0.03 -0.77 10.15 -39.40 -0.40 -1.17 16 14 C -0.32 -8.19 9.83 -38.66 -0.38 -8.57 16 15 C 0.29 8.26 6.55 -85.00 -0.56 7.70 16 16 C -0.44 -11.96 9.14 -37.74 -0.34 -12.31 16 17 H 0.08 2.10 7.85 -52.49 -0.41 1.68 16 18 C 0.07 1.88 5.50 -17.34 -0.10 1.79 16 19 N -0.72 -19.08 11.46 55.55 0.64 -18.45 16 20 Si 0.90 18.82 29.56 -169.99 -5.02 13.79 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 N -0.53 -14.69 7.89 -10.33 -0.08 -14.77 16 25 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 26 H 0.07 0.62 7.02 -51.92 -0.36 0.26 16 27 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.40 6.72 -51.93 -0.35 0.05 16 29 H 0.06 0.87 7.61 -51.93 -0.40 0.48 16 30 H 0.38 3.83 9.12 45.56 0.42 4.24 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.93 6.92 -51.93 -0.36 0.57 16 33 H 0.06 1.14 7.65 -51.93 -0.40 0.74 16 34 H 0.39 7.68 8.52 -40.82 -0.35 7.33 16 35 H 0.09 2.01 6.05 -52.49 -0.32 1.69 16 36 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 37 H 0.09 2.25 8.06 -52.48 -0.42 1.83 16 38 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -30.84 325.27 -8.77 -39.61 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -4.50 Total: 14.23 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -1.85 Total: -11.40 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.31 Total: -47.94 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.44 Total: -8.23 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.79 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.16 Total: -4.97 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.84 -8.77 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255096660.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.437 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds