Wall clock time and date at job start Tue Mar 31 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86793 * 119.99684 * 2 1 4 4 H 1.48498 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47279 * 299.99892 * 3 2 1 6 6 H 1.48505 * 109.47400 * 60.00028 * 3 2 1 7 7 C 1.40018 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00069 * 180.02562 * 7 2 1 9 9 C 1.41322 * 120.00409 * 359.97438 * 7 2 1 10 10 C 1.40587 * 119.78540 * 180.02562 * 9 7 2 11 11 C 1.38348 * 119.14825 * 180.02562 * 10 9 7 12 12 C 1.38640 * 118.67670 * 359.74961 * 11 10 9 13 13 C 1.39752 * 119.49255 * 0.48098 * 12 11 10 14 14 N 1.38829 * 119.58587 * 179.79265 * 13 12 11 15 15 C 1.46978 * 111.01356 * 50.11845 * 14 13 12 16 16 C 1.52965 * 108.73196 * 52.28125 * 15 14 13 17 17 C 1.50534 * 109.78234 * 50.34567 * 16 15 14 18 18 N 1.32647 * 119.30397 * 163.21393 * 17 16 15 19 19 C 1.31705 * 120.85927 * 179.85297 * 18 17 16 20 20 N 1.31810 * 121.73994 * 359.96267 * 19 18 17 21 21 C 1.32273 * 120.73314 * 0.08587 * 20 19 18 22 22 C 1.37950 * 121.64569 * 343.16736 * 17 16 15 23 23 C 1.46729 * 111.00383 * 173.19938 * 14 13 12 24 24 N 1.31978 * 120.83153 * 359.50401 * 13 12 11 25 25 H 0.97002 * 120.00159 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.42499 * 0.02562 * 10 9 7 27 27 H 1.07993 * 120.66349 * 179.97438 * 11 10 9 28 28 H 1.08002 * 120.25177 * 180.26619 * 12 11 10 29 29 H 1.09003 * 109.51811 * 292.54255 * 15 14 13 30 30 H 1.09001 * 109.61870 * 172.08191 * 15 14 13 31 31 H 1.09002 * 109.41391 * 290.26786 * 16 15 14 32 32 H 1.09002 * 109.41194 * 170.42229 * 16 15 14 33 33 H 1.08004 * 119.12900 * 179.97438 * 19 18 17 34 34 H 1.08000 * 120.44593 * 180.02562 * 21 20 19 35 35 H 1.08995 * 109.32764 * 168.51522 * 23 14 13 36 36 H 1.09002 * 109.18092 * 48.96086 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2126 0.0010 9 6 1.3011 -2.4365 0.0016 10 6 2.0087 -3.6513 0.0027 11 6 1.3037 -4.8418 0.0032 12 6 -0.0818 -4.7944 0.0080 13 6 -0.7280 -3.5553 0.0019 14 7 -2.1154 -3.5056 0.0023 15 6 -2.6730 -4.3605 1.0598 16 6 -2.0081 -3.9957 2.3882 17 6 -2.0705 -2.5062 2.5970 18 7 -1.8625 -2.0114 3.8100 19 6 -1.9070 -0.7131 4.0267 20 7 -2.1570 0.1437 3.0568 21 6 -2.3752 -0.2778 1.8221 22 6 -2.3379 -1.6401 1.5570 23 6 -2.5923 -2.1267 0.1576 24 7 -0.0358 -2.4315 0.0015 25 1 -0.4850 0.8400 -0.0004 26 1 3.0887 -3.6552 0.0031 27 1 1.8224 -5.7890 0.0037 28 1 -0.6575 -5.7083 0.0128 29 1 -2.4733 -5.4063 0.8259 30 1 -3.7485 -4.1983 1.1325 31 1 -0.9662 -4.3158 2.3718 32 1 -2.5284 -4.4979 3.2037 33 1 -1.7339 -0.3406 5.0256 34 1 -2.5792 0.4284 1.0308 35 1 -3.6619 -2.0896 -0.0484 36 1 -2.0665 -1.4842 -0.5488 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353029191.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:34 Heat of formation + Delta-G solvation = 85.187237 kcal Electronic energy + Delta-G solvation = -22732.081605 eV Core-core repulsion = 19601.876967 eV Total energy + Delta-G solvation = -3130.204638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.40130 -40.60264 -38.36920 -35.41296 -35.04489 -33.15289 -32.64117 -31.57804 -30.73520 -27.71392 -26.34439 -25.64682 -24.06627 -23.43142 -22.95319 -20.96734 -19.31811 -18.62795 -18.02200 -17.27260 -16.74069 -16.52498 -16.16035 -16.03997 -15.80794 -14.93644 -14.86577 -14.65469 -14.40596 -14.05215 -13.99225 -13.56954 -13.23852 -12.91472 -12.87743 -12.66122 -12.63906 -12.36183 -12.17673 -12.06880 -11.77527 -11.30035 -11.24624 -10.55322 -10.12645 -9.93632 -9.83699 -9.45816 -8.75232 -8.29349 -6.46321 0.13964 0.23103 0.91067 1.21241 1.37778 1.48074 1.49109 2.19894 2.75217 2.88402 2.95853 3.25955 3.40373 3.66451 3.91270 3.94172 3.96481 4.17968 4.24032 4.37909 4.55149 4.60575 4.67845 4.74384 4.83084 4.89827 4.94236 4.96468 5.04964 5.07361 5.28247 5.36158 5.61507 5.67942 5.89624 5.96574 6.00058 6.13323 6.32952 6.48719 6.80087 7.08268 7.21495 8.19365 8.42355 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.010273 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.962908 B = 2724.811562 C = 4000.322908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.038 3.962 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.262 1.262 6 H -0.275 1.275 7 C -0.467 4.467 8 H 0.074 0.926 9 C 0.245 3.755 10 C -0.327 4.327 11 C -0.043 4.043 12 C -0.322 4.322 13 C 0.312 3.688 14 N -0.472 5.472 15 C 0.066 3.934 16 C -0.098 4.098 17 C 0.151 3.849 18 N -0.541 5.541 19 C 0.261 3.739 20 N -0.540 5.540 21 C 0.170 3.830 22 C -0.154 4.154 23 C 0.112 3.888 24 N -0.517 5.517 25 H 0.274 0.726 26 H 0.096 0.904 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.212 0.788 34 H 0.171 0.829 35 H 0.109 0.891 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.741 -2.826 2.456 8.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.186 4.186 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.187 1.187 6 H -0.200 1.200 7 C -0.499 4.499 8 H 0.092 0.908 9 C 0.119 3.881 10 C -0.350 4.350 11 C -0.067 4.067 12 C -0.346 4.346 13 C 0.073 3.927 14 N -0.188 5.188 15 C -0.061 4.061 16 C -0.137 4.137 17 C 0.007 3.993 18 N -0.255 5.255 19 C -0.027 4.027 20 N -0.254 5.254 21 C 0.003 3.997 22 C -0.160 4.160 23 C -0.017 4.017 24 N -0.235 5.235 25 H 0.085 0.915 26 H 0.114 0.886 27 H 0.146 0.854 28 H 0.143 0.857 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.228 0.772 34 H 0.188 0.812 35 H 0.127 0.873 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.392 -1.751 2.902 9.051 hybrid contribution 1.638 0.054 -0.110 1.642 sum -6.755 -1.696 2.792 7.503 Atomic orbital electron populations 1.70152 1.07698 1.28045 1.28652 1.26579 0.95921 1.03063 0.93014 0.85351 0.79429 0.77555 0.78614 1.18846 1.18663 1.20047 1.19797 0.94180 0.90650 1.45242 0.90750 1.18685 0.88452 0.92785 0.88179 1.21783 0.98919 0.94187 1.20114 1.21069 0.94132 0.97081 0.94460 1.21061 0.94473 0.96692 1.22402 1.20179 0.89625 0.90568 0.92312 1.59646 1.04649 1.10320 1.44150 1.22435 0.99855 0.98529 0.85291 1.21039 1.02613 0.88737 1.01329 1.21421 0.91590 0.97842 0.88451 1.68237 1.16063 1.17125 1.24112 1.25167 0.92863 0.84898 0.99731 1.68323 1.14585 1.40672 1.01844 1.23066 0.89533 0.93764 0.93295 1.21600 0.99957 0.95810 0.98612 1.20832 1.00646 0.88744 0.91455 1.68576 1.07295 1.25849 1.21751 0.91487 0.88617 0.85425 0.85673 0.87264 0.87201 0.91483 0.87192 0.77174 0.81224 0.87302 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -34.91 9.62 21.84 0.21 -34.70 16 2 C 0.04 1.87 5.50 85.29 0.47 2.34 16 3 Si 0.97 38.52 29.56 68.60 2.03 40.55 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 5 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.47 -25.13 9.14 23.46 0.21 -24.91 16 8 H 0.07 3.91 7.85 -2.91 -0.02 3.89 16 9 C 0.25 13.25 6.55 40.19 0.26 13.51 16 10 C -0.33 -16.18 9.83 22.87 0.22 -15.96 16 11 C -0.04 -1.85 10.15 22.39 0.23 -1.62 16 12 C -0.32 -13.26 8.38 22.73 0.19 -13.07 16 13 C 0.31 13.66 4.87 133.40 0.65 14.31 16 14 N -0.47 -16.86 5.07 -707.09 -3.58 -20.45 16 15 C 0.07 1.81 5.56 86.28 0.48 2.29 16 16 C -0.10 -3.16 5.53 29.78 0.16 -3.00 16 17 C 0.15 5.71 6.44 42.31 0.27 5.98 16 18 N -0.54 -20.76 10.35 -188.58 -1.95 -22.71 16 19 C 0.26 9.41 12.28 180.91 2.22 11.63 16 20 N -0.54 -20.34 10.44 -199.94 -2.09 -22.43 16 21 C 0.17 6.29 9.67 84.77 0.82 7.11 16 22 C -0.15 -5.74 4.81 -19.90 -0.10 -5.83 16 23 C 0.11 3.92 5.24 85.47 0.45 4.36 16 24 N -0.52 -26.05 5.39 -186.59 -1.01 -27.06 16 25 H 0.27 12.07 8.09 -92.71 -0.75 11.32 16 26 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 27 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 28 H 0.13 4.34 6.95 -2.91 -0.02 4.32 16 29 H 0.11 2.61 6.95 -2.39 -0.02 2.60 16 30 H 0.11 2.40 8.05 -2.39 -0.02 2.38 16 31 H 0.07 2.58 6.70 -2.39 -0.02 2.56 16 32 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.21 5.96 8.06 -2.91 -0.02 5.93 16 34 H 0.17 5.69 7.95 -2.91 -0.02 5.66 16 35 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.10 4.12 6.69 -2.39 -0.02 4.10 16 Total: -1.00 -62.47 295.37 1.29 -61.18 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 1.13 Total: 28.48 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 6.55 Total: -2.86 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -8.42 Total: -127.35 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -62.47 1.29 -61.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353029191.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.367 kcal (2) G-P(sol) polarization free energy of solvation -62.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds