Wall clock time and date at job start Tue Mar 31 2020 05:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47557 * 2 1 4 4 C 1.50697 * 109.46983 * 120.00038 * 2 1 3 5 5 S 1.70940 * 125.58751 * 295.05206 * 4 2 1 6 6 C 1.70771 * 91.13049 * 180.02562 * 5 4 2 7 7 N 1.28643 * 110.56107 * 359.97438 * 6 5 4 8 8 C 1.33559 * 115.76534 * 0.02562 * 7 6 5 9 9 C 1.47268 * 123.14150 * 180.02562 * 8 7 6 10 10 O 1.21629 * 119.99823 * 104.06805 * 9 8 7 11 11 N 1.34783 * 120.00323 * 284.06746 * 9 8 7 12 12 C 1.46500 * 119.99702 * 4.86358 * 11 9 8 13 13 C 1.46500 * 120.00032 * 184.86514 * 11 9 8 14 14 H 1.09004 * 109.47116 * 0.02562 * 13 11 9 15 15 C 1.52996 * 109.47004 * 239.99726 * 13 11 9 16 16 C 1.50699 * 109.47120 * 120.00113 * 13 11 9 17 17 H 1.08000 * 120.00084 * 359.97438 * 16 13 11 18 18 C 1.37878 * 120.00147 * 179.97438 * 16 13 11 19 19 N 1.31515 * 119.99897 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99954 * 179.97438 * 18 16 13 21 21 H 1.48493 * 109.47165 * 90.00082 * 20 18 16 22 22 H 1.48506 * 109.46941 * 210.00127 * 20 18 16 23 23 H 1.48497 * 109.47497 * 329.99575 * 20 18 16 24 24 H 1.09004 * 109.46972 * 59.99688 * 1 2 3 25 25 H 1.09001 * 109.47343 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47283 * 300.00342 * 1 2 3 27 27 H 1.09005 * 109.46765 * 239.99568 * 2 1 3 28 28 H 1.08997 * 109.47093 * 180.02562 * 3 2 1 29 29 H 1.09010 * 109.46598 * 299.99977 * 3 2 1 30 30 H 1.08994 * 109.47116 * 59.99570 * 3 2 1 31 31 H 1.08005 * 124.71905 * 180.26958 * 6 5 4 32 32 H 1.09000 * 109.46971 * 94.38655 * 12 11 9 33 33 H 1.09002 * 109.46997 * 214.39005 * 12 11 9 34 34 H 1.09001 * 109.46996 * 334.38715 * 12 11 9 35 35 H 1.09007 * 109.46890 * 60.00193 * 15 13 11 36 36 H 1.08993 * 109.47459 * 179.97438 * 15 13 11 37 37 H 1.08994 * 109.47373 * 300.00202 * 15 13 11 38 38 H 0.96995 * 120.00396 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 1.2304 5 16 1.8088 -0.1868 2.8423 6 6 2.6646 -1.5401 3.4362 7 7 3.0599 -2.2862 2.4656 8 6 2.7336 -1.8663 1.2405 9 6 3.1026 -2.5948 0.0149 10 8 2.2654 -3.2453 -0.5812 11 7 4.3680 -2.5407 -0.4462 12 6 5.4003 -1.8462 0.3273 13 6 4.7109 -3.1762 -1.7208 14 1 3.8207 -3.6385 -2.1475 15 6 5.7792 -4.2460 -1.4861 16 6 5.2421 -2.1365 -2.6736 17 1 5.3164 -1.1054 -2.3612 18 6 5.6333 -2.5016 -3.9443 19 7 5.5434 -3.7573 -4.3247 20 14 6.2911 -1.2127 -5.1256 21 1 7.7641 -1.1057 -4.9714 22 1 5.9667 -1.6076 -6.5199 23 1 5.6653 0.0999 -4.8247 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 3.1300 1.4423 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 2.8444 -1.7439 4.4815 32 1 5.9265 -2.5636 0.9571 33 1 6.1077 -1.3730 -0.3536 34 1 4.9347 -1.0855 0.9539 35 1 5.3950 -4.9980 -0.7969 36 1 6.0341 -4.7192 -2.4343 37 1 6.6692 -3.7833 -1.0597 38 1 5.8182 -4.0142 -5.2188 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355145213.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:06 Heat of formation + Delta-G solvation = -0.477633 kcal Electronic energy + Delta-G solvation = -20739.743739 eV Core-core repulsion = 17708.975594 eV Total energy + Delta-G solvation = -3030.768145 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.31225 -38.12986 -35.78162 -35.26351 -32.82052 -30.11497 -28.97188 -27.17081 -26.16348 -25.57036 -25.19455 -22.73151 -21.47189 -20.18141 -18.17138 -17.68890 -16.61448 -16.29654 -15.90638 -15.06268 -14.56867 -14.17948 -14.11055 -13.98134 -13.76493 -13.10008 -13.01676 -12.47600 -12.32484 -12.25649 -11.91427 -11.63961 -11.48107 -11.46995 -11.23623 -11.08123 -10.82762 -10.77088 -10.70087 -10.27434 -10.17616 -9.70423 -9.36139 -9.26430 -9.14510 -8.70969 -8.44131 -7.61410 -6.08381 -4.16900 0.72651 1.32668 1.72334 2.63946 3.24275 3.26036 3.32602 3.35036 3.89757 4.37502 4.46920 4.73339 4.89877 5.12634 5.16854 5.22993 5.42875 5.55251 5.57764 5.77377 5.78076 5.89795 5.97052 6.08506 6.14430 6.25296 6.27048 6.38896 6.78194 6.87554 7.07732 7.40472 7.51295 7.63048 7.70045 8.00638 8.17125 8.47446 8.78322 8.97675 9.49370 10.96982 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020787 B = 0.005706 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.645175 B = 4905.938885 C = 5507.955040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.026 4.026 3 C -0.144 4.144 4 C -0.201 4.201 5 S 0.176 5.824 6 C -0.009 4.009 7 N -0.432 5.432 8 C 0.031 3.969 9 C 0.585 3.415 10 O -0.539 6.539 11 N -0.575 5.575 12 C 0.092 3.908 13 C 0.258 3.742 14 H 0.064 0.936 15 C -0.146 4.146 16 C -0.527 4.527 17 H 0.060 0.940 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.200 0.800 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.013 0.987 36 H 0.094 0.906 37 H 0.030 0.970 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 10.124 13.800 18.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.047 4.047 3 C -0.202 4.202 4 C -0.323 4.323 5 S 0.431 5.569 6 C -0.308 4.308 7 N -0.146 5.146 8 C -0.104 4.104 9 C 0.367 3.633 10 O -0.417 6.417 11 N -0.305 5.305 12 C -0.052 4.052 13 C 0.159 3.841 14 H 0.082 0.918 15 C -0.204 4.204 16 C -0.566 4.566 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.524 5.524 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.217 0.783 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.032 0.968 36 H 0.113 0.887 37 H 0.049 0.951 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.161 9.954 13.914 18.184 hybrid contribution 0.822 0.073 -1.186 1.445 sum -5.339 10.027 12.728 17.060 Atomic orbital electron populations 1.21873 0.93463 1.02711 1.01913 1.19722 0.96229 0.95576 0.93205 1.21909 1.01829 0.94330 1.02084 1.25424 1.05746 1.00210 1.00949 1.82514 1.51437 1.26313 0.96613 1.28331 1.03041 0.95964 1.03476 1.67039 1.19943 1.29822 0.97827 1.20617 1.01675 0.95042 0.93101 1.17096 0.83293 0.80619 0.82258 1.90777 1.49795 1.42026 1.59074 1.48161 1.06589 1.52538 1.23201 1.21525 0.92155 0.96014 0.95543 1.19018 0.96047 0.91495 0.77558 0.91801 1.22068 0.98344 0.98048 1.01979 1.21294 1.43461 0.94364 0.97452 0.92176 1.24886 0.95449 0.95498 0.97849 1.69882 1.47279 1.15861 1.19380 0.86492 0.79094 0.81576 0.80221 1.20586 1.21063 1.19919 0.91588 0.91868 0.92716 0.88339 0.92004 0.91486 0.92631 0.78299 0.93427 0.90257 0.93381 0.96831 0.88736 0.95087 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.16 37.16 0.34 -1.41 16 2 C -0.03 -0.38 3.19 -91.78 -0.29 -0.68 16 3 C -0.14 -1.69 9.05 37.16 0.34 -1.36 16 4 C -0.20 -3.06 5.03 -35.39 -0.18 -3.23 16 5 S 0.18 1.91 22.45 -107.50 -2.41 -0.50 16 6 C -0.01 -0.11 12.17 51.43 0.63 0.52 16 7 N -0.43 -7.27 10.68 -12.36 -0.13 -7.40 16 8 C 0.03 0.57 4.47 -84.52 -0.38 0.19 16 9 C 0.59 13.39 6.38 -12.59 -0.08 13.31 16 10 O -0.54 -14.23 16.45 5.25 0.09 -14.14 16 11 N -0.57 -13.14 2.75 -176.59 -0.49 -13.63 16 12 C 0.09 1.73 9.41 59.85 0.56 2.30 16 13 C 0.26 6.77 2.63 -69.08 -0.18 6.59 16 14 H 0.06 1.92 6.91 -51.93 -0.36 1.56 16 15 C -0.15 -3.62 8.97 37.16 0.33 -3.29 16 16 C -0.53 -14.22 8.03 -34.44 -0.28 -14.49 16 17 H 0.06 1.58 7.26 -52.49 -0.38 1.20 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 19 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 20 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 1.78 7.17 -51.93 -0.37 1.41 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.05 0.54 7.84 -51.93 -0.41 0.14 16 31 H 0.20 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.51 6.97 -51.93 -0.36 1.15 16 34 H 0.05 0.82 6.63 -51.93 -0.34 0.47 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 37 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 328.18 15.07 4.95 4.95 Total: -1.00 -31.95 328.18 -7.13 -39.08 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.46 Total: 0.11 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 0.72 Total: 0.13 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.01 Total: -45.47 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.09 Total: -14.14 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.41 Total: -0.50 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.95 -7.13 -39.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355145213.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.600 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds