Wall clock time and date at job start Tue Mar 31 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47127 * 59.99562 * 4 3 2 6 6 C 1.52999 * 109.46991 * 300.00247 * 4 3 2 7 7 C 1.50697 * 109.47466 * 179.97438 * 4 3 2 8 8 O 1.20826 * 119.99685 * 359.97438 * 7 4 3 9 9 O 1.34219 * 120.00226 * 180.02562 * 7 4 3 10 10 C 1.45203 * 117.00018 * 180.02562 * 9 7 4 11 11 H 1.08995 * 109.47381 * 29.99456 * 10 9 7 12 12 C 1.50702 * 109.47148 * 149.99563 * 10 9 7 13 13 H 1.07997 * 120.00263 * 359.97438 * 12 10 9 14 14 C 1.37879 * 119.99634 * 179.97438 * 12 10 9 15 15 N 1.31511 * 120.00168 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99750 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47423 * 59.99901 * 16 14 12 18 18 H 1.48504 * 109.47262 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47069 * 299.99773 * 16 14 12 20 20 C 1.50699 * 109.46752 * 269.99316 * 10 9 7 21 21 C 1.34514 * 125.79046 * 145.00236 * 20 10 9 22 22 C 1.41380 * 106.84457 * 180.02562 * 21 20 10 23 23 C 1.34514 * 106.83898 * 359.97438 * 22 21 20 24 24 O 1.34303 * 108.42104 * 359.73311 * 23 22 21 25 25 H 1.09006 * 109.47287 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47330 * 300.00223 * 1 2 3 27 27 H 1.09001 * 109.46918 * 60.00351 * 1 2 3 28 28 H 1.09002 * 109.47259 * 59.99707 * 3 2 1 29 29 H 1.09001 * 109.46621 * 299.99968 * 3 2 1 30 30 H 1.09001 * 109.46801 * 300.00272 * 5 4 3 31 31 H 1.09001 * 109.46998 * 59.99868 * 5 4 3 32 32 H 1.09000 * 109.47050 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47160 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.46719 * 299.99711 * 6 4 3 35 35 H 1.08993 * 109.47839 * 59.99553 * 6 4 3 36 36 H 0.97002 * 119.99697 * 180.02562 * 15 14 12 37 37 H 1.08001 * 126.57988 * 0.03267 * 21 20 10 38 38 H 1.07997 * 126.58063 * 179.97438 * 22 21 20 39 39 H 1.08001 * 125.78855 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9875 0.4250 -1.2483 6 6 3.9864 0.4255 1.2502 7 6 4.1485 2.5613 0.0000 8 8 3.4383 3.5388 -0.0013 9 8 5.4833 2.7015 -0.0001 10 6 6.0037 4.0571 -0.0001 11 1 5.3031 4.7153 0.5136 12 6 7.3325 4.0851 0.7103 13 1 7.7445 3.1753 1.1211 14 6 8.0222 5.2724 0.8357 15 7 7.5208 6.3803 0.3350 16 14 9.6696 5.3070 1.7156 17 1 10.6238 4.4101 1.0155 18 1 10.2018 6.6934 1.7157 19 1 9.4927 4.8453 3.1159 20 6 6.1838 4.5259 -1.4210 21 6 5.9955 5.7817 -1.8649 22 6 6.2734 5.7722 -3.2510 23 6 6.6154 4.5113 -3.5713 24 8 6.5654 3.7622 -2.4577 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.5440 -0.5707 -1.2482 31 1 3.6662 0.9657 -2.1385 32 1 5.0740 0.3385 -1.2476 33 1 5.0730 0.3391 1.2504 34 1 3.6644 0.9667 2.1399 35 1 3.5431 -0.5702 1.2503 36 1 8.0062 7.2154 0.4229 37 1 5.6907 6.6338 -1.2754 38 1 6.2212 6.6155 -3.9237 39 1 6.8889 4.1618 -4.5559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526994084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:44 Heat of formation + Delta-G solvation = -123.453500 kcal Electronic energy + Delta-G solvation = -23104.091131 eV Core-core repulsion = 19592.944731 eV Total energy + Delta-G solvation = -3511.146401 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.34992 -40.01783 -38.02904 -35.85005 -34.70100 -33.26824 -31.68594 -29.62597 -27.46368 -27.13254 -26.66939 -25.54613 -23.78700 -22.18171 -20.56386 -19.65732 -18.89148 -17.13295 -16.75040 -16.70533 -15.92886 -15.79159 -15.36193 -15.04171 -15.00384 -14.58745 -14.36490 -13.50763 -13.22398 -13.13842 -12.78657 -12.17504 -12.07573 -11.88696 -11.71510 -11.66593 -11.59088 -11.51254 -11.22064 -11.13334 -10.97102 -10.91303 -10.60244 -10.39648 -10.11220 -9.68084 -9.56584 -9.43196 -8.83354 -8.63961 -7.24989 -6.21717 -4.41151 2.85716 2.87409 3.16594 3.23368 3.26515 3.31968 3.89901 4.06695 4.19000 4.29874 4.79560 4.93023 5.05139 5.13786 5.25994 5.26328 5.52878 5.55009 5.61804 5.68548 5.83689 5.93148 5.99072 6.01391 6.06790 6.13697 6.35565 6.42182 6.46987 6.70950 6.99422 7.08253 7.16678 7.24196 7.37824 7.68297 7.72262 7.84057 8.34883 8.49080 8.76675 9.25866 10.75546 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.005433 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.924462 B = 5152.882885 C = 5959.391510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.083 3.917 4 C -0.054 4.054 5 C -0.134 4.134 6 C -0.135 4.135 7 C 0.467 3.533 8 O -0.519 6.519 9 O -0.340 6.340 10 C 0.298 3.702 11 H 0.077 0.923 12 C -0.530 4.530 13 H 0.078 0.922 14 C 0.070 3.930 15 N -0.868 5.868 16 Si 0.915 3.085 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.021 3.979 21 C -0.176 4.176 22 C -0.219 4.219 23 C -0.090 4.090 24 O -0.178 6.178 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.269 0.731 37 H 0.145 0.855 38 H 0.130 0.870 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.525 -9.081 -2.392 12.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C 0.006 3.994 4 C -0.055 4.055 5 C -0.192 4.192 6 C -0.193 4.193 7 C 0.309 3.691 8 O -0.408 6.408 9 O -0.255 6.255 10 C 0.245 3.755 11 H 0.095 0.905 12 C -0.567 4.567 13 H 0.096 0.904 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.741 3.259 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.030 4.030 21 C -0.195 4.195 22 C -0.238 4.238 23 C -0.157 4.157 24 O -0.075 6.075 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.163 0.837 38 H 0.148 0.852 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.473 -9.010 -2.388 12.596 hybrid contribution 0.751 1.034 0.100 1.282 sum -7.721 -7.976 -2.288 11.335 Atomic orbital electron populations 1.22715 0.81042 1.02464 1.00112 1.87790 1.19506 1.27745 1.95510 1.22278 0.91331 0.84098 1.01691 1.20328 0.93728 0.91347 1.00082 1.21762 1.02621 1.00162 0.94629 1.21772 1.02663 1.00214 0.94609 1.23150 0.82695 0.90896 0.72338 1.90609 1.62765 1.41265 1.46187 1.86529 1.20916 1.36461 1.81641 1.19195 0.95656 0.75722 0.84909 0.90519 1.20856 1.03401 0.95871 1.36570 0.90418 1.24937 0.98685 0.94907 0.95081 1.70020 1.38666 0.99269 1.42303 0.86282 0.82349 0.77313 0.79968 1.19839 1.20930 1.19710 1.23566 0.99720 0.90950 0.88777 1.21293 1.07581 0.97758 0.92862 1.21714 1.08207 0.97096 0.96818 1.23599 1.10196 0.91479 0.90432 1.83987 1.67807 1.39566 1.16091 0.89691 0.94087 0.94103 0.92288 0.92356 0.90744 0.92526 0.90865 0.90812 0.92384 0.90749 0.92090 0.83681 0.85181 0.79920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.39 -4.96 9.35 -35.23 -0.33 -5.29 16 3 C 0.08 1.20 4.10 37.16 0.15 1.35 16 4 C -0.05 -0.86 0.79 -155.66 -0.12 -0.98 16 5 C -0.13 -1.96 8.26 37.16 0.31 -1.65 16 6 C -0.14 -1.92 8.26 37.16 0.31 -1.61 16 7 C 0.47 9.77 6.52 36.00 0.23 10.00 16 8 O -0.52 -12.05 15.20 -18.75 -0.29 -12.34 16 9 O -0.34 -8.01 9.64 -41.98 -0.40 -8.41 16 10 C 0.30 7.89 2.41 -29.03 -0.07 7.82 16 11 H 0.08 2.18 7.16 -51.93 -0.37 1.80 16 12 C -0.53 -14.53 8.89 -34.44 -0.31 -14.84 16 13 H 0.08 2.08 7.81 -52.49 -0.41 1.67 16 14 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 15 N -0.87 -23.81 10.47 55.43 0.58 -23.23 16 16 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 C 0.02 0.54 5.67 -35.63 -0.20 0.34 16 21 C -0.18 -4.40 9.04 -39.70 -0.36 -4.76 16 22 C -0.22 -4.71 10.91 -39.70 -0.43 -5.14 16 23 C -0.09 -1.85 12.09 29.42 0.36 -1.50 16 24 O -0.18 -4.36 10.63 2.20 0.02 -4.34 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 29 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 30 H 0.07 0.94 7.68 -51.93 -0.40 0.54 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 33 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 36 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.15 3.75 7.49 -52.49 -0.39 3.35 16 38 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 39 H 0.18 2.86 8.06 -52.49 -0.42 2.43 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -30.62 334.79 -5.26 -35.88 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.75 Total: 4.67 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 0.88 Total: -7.76 kcal Atomic # 7 Polarization: -23.81 SS G_CDS: 0.58 Total: -23.23 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -1.00 Total: -30.38 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.62 -5.26 -35.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526994084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.575 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds