Wall clock time and date at job start Tue Mar 31 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47127 * 59.99562 * 4 3 2 6 6 C 1.52999 * 109.46991 * 300.00247 * 4 3 2 7 7 C 1.50697 * 109.47466 * 179.97438 * 4 3 2 8 8 O 1.20826 * 119.99685 * 359.97438 * 7 4 3 9 9 O 1.34219 * 120.00226 * 180.02562 * 7 4 3 10 10 C 1.45203 * 117.00018 * 180.02562 * 9 7 4 11 11 H 1.08995 * 109.47381 * 29.99456 * 10 9 7 12 12 C 1.50702 * 109.47148 * 149.99563 * 10 9 7 13 13 H 1.07997 * 120.00263 * 359.97438 * 12 10 9 14 14 C 1.37879 * 119.99634 * 179.97438 * 12 10 9 15 15 N 1.31511 * 120.00168 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99750 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47423 * 59.99901 * 16 14 12 18 18 H 1.48504 * 109.47262 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47069 * 299.99773 * 16 14 12 20 20 C 1.50699 * 109.46752 * 269.99316 * 10 9 7 21 21 C 1.34514 * 125.79046 * 145.00236 * 20 10 9 22 22 C 1.41380 * 106.84457 * 180.02562 * 21 20 10 23 23 C 1.34514 * 106.83898 * 359.97438 * 22 21 20 24 24 O 1.34303 * 108.42104 * 359.73311 * 23 22 21 25 25 H 1.09006 * 109.47287 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47330 * 300.00223 * 1 2 3 27 27 H 1.09001 * 109.46918 * 60.00351 * 1 2 3 28 28 H 1.09002 * 109.47259 * 59.99707 * 3 2 1 29 29 H 1.09001 * 109.46621 * 299.99968 * 3 2 1 30 30 H 1.09001 * 109.46801 * 300.00272 * 5 4 3 31 31 H 1.09001 * 109.46998 * 59.99868 * 5 4 3 32 32 H 1.09000 * 109.47050 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47160 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.46719 * 299.99711 * 6 4 3 35 35 H 1.08993 * 109.47839 * 59.99553 * 6 4 3 36 36 H 0.97002 * 119.99697 * 180.02562 * 15 14 12 37 37 H 1.08001 * 126.57988 * 0.03267 * 21 20 10 38 38 H 1.07997 * 126.58063 * 179.97438 * 22 21 20 39 39 H 1.08001 * 125.78855 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9875 0.4250 -1.2483 6 6 3.9864 0.4255 1.2502 7 6 4.1485 2.5613 0.0000 8 8 3.4383 3.5388 -0.0013 9 8 5.4833 2.7015 -0.0001 10 6 6.0037 4.0571 -0.0001 11 1 5.3031 4.7153 0.5136 12 6 7.3325 4.0851 0.7103 13 1 7.7445 3.1753 1.1211 14 6 8.0222 5.2724 0.8357 15 7 7.5208 6.3803 0.3350 16 14 9.6696 5.3070 1.7156 17 1 10.6238 4.4101 1.0155 18 1 10.2018 6.6934 1.7157 19 1 9.4927 4.8453 3.1159 20 6 6.1838 4.5259 -1.4210 21 6 5.9955 5.7817 -1.8649 22 6 6.2734 5.7722 -3.2510 23 6 6.6154 4.5113 -3.5713 24 8 6.5654 3.7622 -2.4577 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.5440 -0.5707 -1.2482 31 1 3.6662 0.9657 -2.1385 32 1 5.0740 0.3385 -1.2476 33 1 5.0730 0.3391 1.2504 34 1 3.6644 0.9667 2.1399 35 1 3.5431 -0.5702 1.2503 36 1 8.0062 7.2154 0.4229 37 1 5.6907 6.6338 -1.2754 38 1 6.2212 6.6155 -3.9237 39 1 6.8889 4.1618 -4.5559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526994084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:43 Heat of formation + Delta-G solvation = -141.357579 kcal Electronic energy + Delta-G solvation = -23104.867510 eV Core-core repulsion = 19592.944731 eV Total energy + Delta-G solvation = -3511.922780 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.18415 -41.66488 -39.21123 -37.60238 -36.01976 -35.24643 -33.52848 -31.54050 -28.67210 -28.34626 -28.29781 -26.59284 -25.57636 -23.87390 -22.37011 -21.43179 -20.52474 -18.93822 -18.55012 -18.17713 -17.49994 -17.05963 -16.85916 -16.60220 -16.49722 -16.37447 -15.79536 -15.02821 -14.70742 -14.35679 -14.27369 -13.85060 -13.63382 -13.50418 -13.32404 -13.09889 -13.06678 -13.00489 -12.79836 -12.78811 -12.39996 -12.22983 -12.12517 -12.05995 -11.78332 -11.40440 -11.21164 -10.81246 -10.66955 -10.50997 -9.11765 -8.23360 -6.53573 1.09231 1.19433 1.39368 1.44005 1.50319 1.70220 2.07730 2.35369 2.41167 2.92018 3.01812 3.48437 3.70980 3.83667 4.04611 4.22802 4.40023 4.40294 4.44645 4.56203 4.60007 4.60843 4.65309 4.79023 4.79944 4.86479 4.88278 4.98520 5.15369 5.25091 5.26618 5.35065 5.41099 5.46785 5.65744 5.82212 5.93868 6.10630 6.47631 6.55622 6.85966 7.18211 8.71989 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.005433 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.924462 B = 5152.882885 C = 5959.391510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.391 6.391 3 C 0.092 3.908 4 C -0.050 4.050 5 C -0.128 4.128 6 C -0.131 4.131 7 C 0.460 3.540 8 O -0.549 6.549 9 O -0.346 6.346 10 C 0.301 3.699 11 H 0.040 0.960 12 C -0.556 4.556 13 H 0.075 0.925 14 C 0.026 3.974 15 N -0.890 5.890 16 Si 0.980 3.020 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.009 4.009 21 C -0.190 4.190 22 C -0.229 4.229 23 C -0.070 4.070 24 O -0.194 6.194 25 H 0.110 0.890 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.271 0.729 37 H 0.125 0.875 38 H 0.165 0.835 39 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 -10.591 -3.398 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.310 6.310 3 C 0.015 3.985 4 C -0.051 4.051 5 C -0.186 4.186 6 C -0.188 4.188 7 C 0.304 3.696 8 O -0.440 6.440 9 O -0.262 6.262 10 C 0.248 3.752 11 H 0.058 0.942 12 C -0.593 4.593 13 H 0.093 0.907 14 C -0.178 4.178 15 N -0.525 5.525 16 Si 0.803 3.197 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.060 4.060 21 C -0.210 4.210 22 C -0.248 4.248 23 C -0.137 4.137 24 O -0.092 6.092 25 H 0.128 0.872 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.183 0.817 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -8.170 -10.536 -3.394 13.757 hybrid contribution 0.529 1.498 0.341 1.625 sum -7.640 -9.038 -3.053 12.222 Atomic orbital electron populations 1.22985 0.79100 1.04325 1.00715 1.87763 1.21506 1.26154 1.95556 1.22052 0.90253 0.85084 1.01105 1.20477 0.94561 0.88236 1.01868 1.21753 1.02272 1.01119 0.93406 1.21779 1.02410 1.01158 0.93412 1.24266 0.81598 0.92788 0.70924 1.90582 1.62975 1.42923 1.47491 1.86519 1.22689 1.34927 1.82049 1.18773 0.94616 0.76333 0.85521 0.94216 1.21116 1.04154 0.96292 1.37705 0.90661 1.25813 1.02126 0.94316 0.95528 1.70157 1.39855 0.99639 1.42835 0.85270 0.77750 0.77550 0.79101 1.19440 1.20196 1.18682 1.23350 1.01974 0.91515 0.89138 1.21361 1.07854 0.96904 0.94895 1.22058 1.08375 0.98941 0.95432 1.24680 1.07069 0.90855 0.91047 1.83961 1.68152 1.40231 1.16819 0.87191 0.93488 0.93561 0.92870 0.93132 0.88031 0.93094 0.91614 0.91445 0.92663 0.88084 0.91999 0.85660 0.81746 0.74387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 113.37 1.25 1.66 16 2 O -0.39 -9.19 9.35 -148.98 -1.39 -10.59 16 3 C 0.09 2.63 4.10 71.98 0.29 2.92 16 4 C -0.05 -1.60 0.79 -52.93 -0.04 -1.64 16 5 C -0.13 -3.59 8.26 71.98 0.59 -3.00 16 6 C -0.13 -3.59 8.26 71.98 0.59 -2.99 16 7 C 0.46 19.97 6.52 71.23 0.46 20.43 16 8 O -0.55 -26.87 15.20 21.97 0.33 -26.53 16 9 O -0.35 -17.02 9.64 -48.69 -0.47 -17.49 16 10 C 0.30 16.77 2.41 29.10 0.07 16.84 16 11 H 0.04 2.45 7.16 -2.39 -0.02 2.43 16 12 C -0.56 -31.54 8.89 25.60 0.23 -31.32 16 13 H 0.08 4.16 7.81 -2.91 -0.02 4.14 16 14 C 0.03 1.39 5.30 84.66 0.45 1.84 16 15 N -0.89 -50.22 10.47 21.45 0.22 -50.00 16 16 Si 0.98 42.82 29.54 68.60 2.03 44.84 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 18 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 20 C -0.01 -0.50 5.67 24.83 0.14 -0.36 16 21 C -0.19 -9.79 9.04 22.19 0.20 -9.59 16 22 C -0.23 -9.53 10.91 22.19 0.24 -9.29 16 23 C -0.07 -2.73 12.09 66.97 0.81 -1.92 16 24 O -0.19 -9.48 10.63 0.84 0.01 -9.48 16 25 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 29 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 30 H 0.10 2.29 7.68 -2.39 -0.02 2.27 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.93 8.11 -2.39 -0.02 1.91 16 33 H 0.07 1.93 8.12 -2.39 -0.02 1.91 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.10 2.25 7.68 -2.39 -0.02 2.23 16 36 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.13 6.83 7.49 -2.91 -0.02 6.81 16 38 H 0.16 5.55 8.06 -2.91 -0.02 5.53 16 39 H 0.24 6.28 8.06 -2.91 -0.02 6.25 16 Total: -1.00 -68.96 334.79 7.06 -61.90 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 1.03 Total: 23.75 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 5.29 Total: -16.42 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.22 Total: -50.00 kcal Atomic # 8 Polarization: -62.56 SS G_CDS: -1.52 Total: -64.08 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -68.96 7.06 -61.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526994084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.455 kcal (2) G-P(sol) polarization free energy of solvation -68.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds