Wall clock time and date at job start Tue Mar 31 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99888 * 2 1 4 4 H 1.48500 * 109.47008 * 270.00351 * 3 2 1 5 5 H 1.48503 * 109.47019 * 29.99919 * 3 2 1 6 6 H 1.48498 * 109.47198 * 150.00366 * 3 2 1 7 7 C 1.37876 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00094 * 172.91212 * 7 2 1 9 9 C 1.50704 * 119.99979 * 352.90938 * 7 2 1 10 10 O 1.45202 * 112.84403 * 62.55693 * 9 7 2 11 11 C 1.34230 * 117.00539 * 51.69237 * 10 9 7 12 12 O 1.20825 * 119.99516 * 5.25893 * 11 10 9 13 13 C 1.50695 * 120.00403 * 185.54378 * 11 10 9 14 14 H 1.09008 * 110.43279 * 302.53649 * 13 11 10 15 15 C 1.54260 * 110.48852 * 65.21779 * 13 11 10 16 16 C 1.53875 * 106.60156 * 142.29261 * 15 13 11 17 17 C 1.54271 * 106.59618 * 359.97438 * 16 15 13 18 18 H 1.08998 * 110.48771 * 95.06723 * 17 16 15 19 19 C 1.50692 * 110.59954 * 217.65751 * 17 16 15 20 20 O 1.20826 * 119.99904 * 114.84171 * 19 17 16 21 21 O 1.34224 * 120.00068 * 294.83836 * 19 17 16 22 22 C 1.54883 * 110.48950 * 180.02562 * 13 11 10 23 23 C 1.53777 * 113.69117 * 193.82077 * 9 7 2 24 24 C 1.53782 * 87.07847 * 89.13073 * 23 9 7 25 25 C 1.53777 * 87.08294 * 25.43444 * 24 23 9 26 26 H 0.97002 * 120.00216 * 5.02704 * 1 2 3 27 27 H 1.09004 * 110.03306 * 261.57410 * 15 13 11 28 28 H 1.08997 * 110.03317 * 23.00461 * 15 13 11 29 29 H 1.08994 * 110.03520 * 240.72292 * 16 15 13 30 30 H 1.09000 * 110.03562 * 119.28421 * 16 15 13 31 31 H 0.96706 * 116.99924 * 180.02562 * 21 19 17 32 32 H 1.09002 * 110.75371 * 321.68748 * 22 13 11 33 33 H 1.08998 * 110.76150 * 85.05961 * 22 13 11 34 34 H 1.08999 * 113.61589 * 203.67427 * 23 9 7 35 35 H 1.08998 * 113.61667 * 334.58366 * 23 9 7 36 36 H 1.09002 * 113.61473 * 270.88211 * 24 23 9 37 37 H 1.09000 * 113.61501 * 139.98146 * 24 23 9 38 38 H 1.08999 * 113.61149 * 220.02610 * 25 24 23 39 39 H 1.08998 * 113.69661 * 89.12669 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0783 -1.1975 -0.1159 9 6 1.2597 -2.4943 0.1600 10 8 0.3221 -2.7439 -0.9203 11 6 0.7967 -2.6528 -2.1725 12 8 1.9760 -2.4678 -2.3596 13 6 -0.1421 -2.7747 -3.3450 14 1 -0.6736 -3.7258 -3.3096 15 6 -1.1381 -1.5969 -3.3640 16 6 -1.3435 -1.2186 -4.8413 17 6 -0.4645 -2.1794 -5.6685 18 1 -1.0495 -3.0336 -6.0094 19 6 0.1486 -1.4596 -6.8418 20 8 1.3466 -1.3137 -6.9022 21 8 -0.6359 -0.9805 -7.8199 22 6 0.6346 -2.6377 -4.6780 23 6 2.1700 -3.6930 0.4749 24 6 1.9851 -3.3424 1.9608 25 6 0.6527 -2.6878 1.5596 26 1 -0.4850 0.8368 -0.0736 27 1 -2.0863 -1.9025 -2.9216 28 1 -0.7255 -0.7501 -2.8156 29 1 -1.0303 -0.1883 -5.0099 30 1 -2.3912 -1.3406 -5.1158 31 1 -0.1969 -0.5264 -8.5522 32 1 1.4166 -1.8832 -4.5935 33 1 1.0533 -3.5972 -4.9816 34 1 1.7382 -4.6542 0.1962 35 1 3.1934 -3.5689 0.1211 36 1 2.7234 -2.6345 2.3376 37 1 1.8669 -4.2146 2.6038 38 1 0.4514 -1.7522 2.0813 39 1 -0.1948 -3.3731 1.5771 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:06 Heat of formation + Delta-G solvation = -169.127903 kcal Electronic energy + Delta-G solvation = -23277.844440 eV Core-core repulsion = 19764.717449 eV Total energy + Delta-G solvation = -3513.126992 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49708 -39.32135 -37.76943 -36.41555 -35.96747 -34.05744 -32.26762 -29.88368 -28.62388 -26.15327 -24.54506 -24.02218 -22.81010 -21.36101 -20.02333 -19.12836 -18.55333 -17.94807 -17.15688 -16.56530 -16.06564 -15.46068 -15.07191 -14.83816 -14.73398 -14.01315 -13.81538 -13.66500 -13.14932 -12.73378 -12.45762 -12.01698 -11.64731 -11.59154 -11.48828 -11.19874 -11.11238 -11.01728 -10.95516 -10.75589 -10.70982 -10.47695 -10.30354 -10.26559 -10.17970 -9.88347 -9.76144 -9.12826 -8.75300 -8.49516 -8.46642 -6.09701 -4.18304 2.22264 3.00077 3.27787 3.34110 3.38953 3.58591 4.10829 4.37357 4.61688 4.67437 4.97768 5.21393 5.41976 5.50241 5.53026 5.60859 5.66718 5.73187 5.78241 5.81333 5.95135 6.00914 6.21103 6.27468 6.41300 6.43069 6.48435 6.54740 6.62785 6.66013 6.76168 6.91565 7.11836 7.30873 7.58366 7.81234 7.89281 7.96321 8.45696 8.83703 9.34078 9.50358 10.94213 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.005791 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.687253 B = 4833.910494 C = 5510.526475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.075 3.925 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.506 4.506 8 H 0.067 0.933 9 C 0.240 3.760 10 O -0.347 6.347 11 C 0.472 3.528 12 O -0.504 6.504 13 C -0.090 4.090 14 H 0.098 0.902 15 C -0.108 4.108 16 C -0.108 4.108 17 C -0.088 4.088 18 H 0.112 0.888 19 C 0.484 3.516 20 O -0.509 6.509 21 O -0.519 6.519 22 C -0.092 4.092 23 C -0.161 4.161 24 C -0.131 4.131 25 C -0.108 4.108 26 H 0.261 0.739 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.406 0.594 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.552 -4.437 -8.880 11.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.543 4.543 8 H 0.085 0.915 9 C 0.206 3.794 10 O -0.264 6.264 11 C 0.314 3.686 12 O -0.392 6.392 13 C -0.110 4.110 14 H 0.116 0.884 15 C -0.145 4.145 16 C -0.146 4.146 17 C -0.107 4.107 18 H 0.130 0.870 19 C 0.326 3.674 20 O -0.396 6.396 21 O -0.331 6.331 22 C -0.129 4.129 23 C -0.198 4.198 24 C -0.169 4.169 25 C -0.146 4.146 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.264 0.736 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.208 -4.436 -8.481 10.896 hybrid contribution 0.784 1.283 -0.642 1.635 sum -4.424 -3.154 -9.123 10.618 Atomic orbital electron populations 1.70036 1.05638 1.26837 1.47559 1.25009 0.94884 0.99094 0.93989 0.86624 0.80162 0.83224 0.78372 1.20531 1.21079 1.19589 1.20917 0.93882 0.88682 1.50808 0.91528 1.21153 0.84976 0.92106 0.81178 1.86405 1.46449 1.78978 1.14537 1.22476 0.87614 0.73773 0.84750 1.90558 1.18161 1.44073 1.86442 1.21806 0.96236 1.01032 0.91897 0.88374 1.22025 0.99103 0.98462 0.94933 1.22117 0.99145 0.98540 0.94788 1.21944 0.99006 0.98943 0.90806 0.86958 1.23499 0.85278 0.75882 0.82721 1.90746 1.16705 1.54772 1.77348 1.84555 1.45001 1.69606 1.33890 1.22378 0.96565 1.03305 0.90672 1.23543 1.01063 0.98825 0.96417 1.22516 0.99286 0.99392 0.95677 1.22901 0.94985 0.99828 0.96850 0.92893 0.90412 0.89338 0.91352 0.90402 0.73577 0.88353 0.90535 0.92143 0.92073 0.90294 0.93052 0.90884 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.44 12.81 55.43 0.71 -22.73 16 2 C 0.08 2.04 5.29 -17.82 -0.09 1.95 16 3 Si 0.89 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.86 6.33 -34.44 -0.22 -14.08 16 8 H 0.07 1.91 7.82 -52.49 -0.41 1.50 16 9 C 0.24 5.99 0.50 -90.96 -0.05 5.94 16 10 O -0.35 -8.56 9.76 -39.26 -0.38 -8.94 16 11 C 0.47 10.88 6.71 36.00 0.24 11.12 16 12 O -0.50 -13.11 14.12 -18.75 -0.26 -13.38 16 13 C -0.09 -1.56 3.36 -90.12 -0.30 -1.86 16 14 H 0.10 1.42 8.14 -51.92 -0.42 0.99 16 15 C -0.11 -1.75 6.36 -25.62 -0.16 -1.91 16 16 C -0.11 -1.40 6.37 -25.61 -0.16 -1.57 16 17 C -0.09 -1.12 3.35 -90.11 -0.30 -1.42 16 18 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 19 C 0.48 6.54 7.49 36.00 0.27 6.81 16 20 O -0.51 -8.75 16.48 -18.75 -0.31 -9.06 16 21 O -0.52 -5.26 13.42 -39.24 -0.53 -5.79 16 22 C -0.09 -1.48 4.99 -24.74 -0.12 -1.60 16 23 C -0.16 -3.54 7.25 -25.92 -0.19 -3.73 16 24 C -0.13 -2.63 7.80 -25.92 -0.20 -2.83 16 25 C -0.11 -2.44 7.30 -25.92 -0.19 -2.63 16 26 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.09 1.80 7.83 -51.93 -0.41 1.39 16 29 H 0.07 0.94 7.83 -51.93 -0.41 0.53 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.41 2.43 9.10 45.56 0.41 2.84 16 32 H 0.10 1.95 6.78 -51.93 -0.35 1.60 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.39 8.09 -51.93 -0.42 0.97 16 36 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.77 8.00 -51.93 -0.42 1.35 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -32.58 327.61 -7.28 -39.85 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.94 Total: 4.51 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -1.48 Total: -5.81 kcal Atomic # 7 Polarization: -23.44 SS G_CDS: 0.71 Total: -22.73 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -1.48 Total: -37.18 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.58 -7.28 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.273 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds