Wall clock time and date at job start Tue Mar 31 2020 05:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 O 1.20831 * 119.99944 * 0.02562 * 12 11 10 14 14 O 1.34225 * 120.00468 * 180.02562 * 12 11 10 15 15 C 1.45198 * 117.00275 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.35739 * 330.27801 * 15 14 12 17 17 C 1.50071 * 109.35802 * 90.00329 * 15 14 12 18 18 C 1.29441 * 124.07815 * 137.31703 * 17 15 14 19 19 C 1.50063 * 124.07485 * 359.54729 * 18 17 15 20 20 C 1.53029 * 110.14914 * 17.13641 * 19 18 17 21 21 H 1.08999 * 109.64480 * 70.24131 * 20 19 18 22 22 C 1.50696 * 109.64346 * 190.66396 * 20 19 18 23 23 O 1.20826 * 119.99754 * 119.99883 * 22 20 19 24 24 O 1.34229 * 120.00148 * 299.99759 * 22 20 19 25 25 C 1.53019 * 109.35687 * 210.68892 * 15 14 12 26 26 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 28 28 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 29 29 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 30 30 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 31 31 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 32 32 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 33 33 H 1.08003 * 117.96054 * 317.33498 * 17 15 14 34 34 H 1.07995 * 117.96191 * 179.57265 * 18 17 15 35 35 H 1.09003 * 109.36027 * 137.33870 * 19 18 17 36 36 H 1.09002 * 109.36251 * 256.92796 * 19 18 17 37 37 H 0.96704 * 116.99600 * 180.02562 * 24 22 20 38 38 H 1.09002 * 109.64328 * 310.03935 * 25 15 14 39 39 H 1.08997 * 109.64516 * 70.67403 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0538 -4.0575 -0.0004 13 8 5.2686 -4.9759 -0.0012 14 8 7.3734 -4.3029 0.0001 15 6 7.7850 -5.6953 -0.0010 16 1 7.0308 -6.2954 0.5078 17 6 7.9269 -6.1710 -1.4173 18 6 8.9031 -6.9081 -1.8405 19 6 10.0346 -7.3821 -0.9762 20 6 9.6620 -7.2459 0.5017 21 1 8.8963 -7.9790 0.7556 22 6 10.8831 -7.4727 1.3551 23 8 11.2744 -6.6002 2.0938 24 8 11.5362 -8.6438 1.2945 25 6 9.1190 -5.8304 0.7364 26 1 -0.4849 0.8402 0.0004 27 1 3.8751 -0.6798 0.8895 28 1 3.8745 -0.6809 -0.8904 29 1 3.6584 -3.1503 0.8903 30 1 3.6578 -3.1507 -0.8897 31 1 5.9148 -2.1229 -0.8898 32 1 5.9147 -2.1229 0.8901 33 1 7.1673 -5.8799 -2.1277 34 1 8.9035 -7.1999 -2.8803 35 1 10.2472 -8.4275 -1.2003 36 1 10.9218 -6.7831 -1.1818 37 1 12.3138 -8.7426 1.8609 38 1 9.8273 -5.0977 0.3498 39 1 8.9658 -5.6690 1.8034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064599.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:58 Heat of formation + Delta-G solvation = -184.106563 kcal Electronic energy + Delta-G solvation = -21345.653360 eV Core-core repulsion = 17831.876845 eV Total energy + Delta-G solvation = -3513.776515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.14321 -40.41928 -38.36118 -36.59042 -36.15336 -34.43364 -32.18280 -31.94403 -30.66049 -28.57681 -25.22821 -24.49547 -23.15490 -21.59535 -20.77681 -19.87909 -18.78084 -18.52797 -17.77892 -17.28037 -16.70270 -16.32549 -16.06449 -15.86608 -15.46237 -14.39928 -14.25895 -14.05187 -13.71123 -13.44411 -13.34018 -13.12998 -12.73087 -12.65433 -12.05545 -11.98427 -11.92400 -11.72894 -11.56703 -11.38815 -11.04692 -10.96600 -10.81934 -10.47224 -10.29786 -9.96978 -9.77319 -9.67844 -9.50300 -9.18547 -8.52989 -6.02817 -4.01214 1.68586 1.73826 2.36378 2.44416 2.93337 3.31375 3.38893 3.41661 4.02556 4.15421 4.33490 4.45789 4.51814 4.70676 4.75847 4.85331 4.97839 5.11524 5.18446 5.27130 5.30393 5.42931 5.48924 5.49602 5.69737 5.72235 5.96285 6.02540 6.14838 6.41676 6.45762 6.49117 6.59638 6.84704 7.30045 7.39445 7.40977 7.79001 7.92849 8.55647 9.03029 9.58882 11.10669 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.039504 B = 0.002614 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.620899 B =10709.523776 C =10969.837439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.092 4.092 11 C -0.115 4.115 12 C 0.459 3.541 13 O -0.503 6.503 14 O -0.350 6.350 15 C 0.119 3.881 16 H 0.098 0.902 17 C -0.164 4.164 18 C -0.140 4.140 19 C -0.082 4.082 20 C -0.078 4.078 21 H 0.117 0.883 22 C 0.486 3.514 23 O -0.508 6.508 24 O -0.515 6.515 25 C -0.102 4.102 26 H 0.263 0.737 27 H 0.018 0.982 28 H 0.013 0.987 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.412 0.588 38 H 0.089 0.911 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.238 -16.440 -0.927 30.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.130 4.130 11 C -0.152 4.152 12 C 0.303 3.697 13 O -0.390 6.390 14 O -0.268 6.268 15 C 0.064 3.936 16 H 0.115 0.885 17 C -0.182 4.182 18 C -0.158 4.158 19 C -0.119 4.119 20 C -0.097 4.097 21 H 0.135 0.865 22 C 0.328 3.672 23 O -0.396 6.396 24 O -0.327 6.327 25 C -0.139 4.139 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.032 0.968 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.271 0.729 38 H 0.108 0.892 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 24.616 -16.340 -0.973 29.561 hybrid contribution 0.748 0.705 0.286 1.067 sum 25.364 -15.635 -0.688 29.804 Atomic orbital electron populations 1.69927 1.06316 1.26856 1.51135 1.25050 0.94763 0.99197 0.94609 0.86760 0.80358 0.83568 0.78478 1.20302 1.21414 1.18943 1.21124 0.89375 0.94588 1.50763 0.90914 1.19600 0.97419 0.91684 0.96433 1.21396 0.88528 1.00234 1.02820 1.21719 0.99825 0.88387 1.05299 1.24372 0.79896 0.93819 0.71628 1.90655 1.56303 1.46934 1.45059 1.86653 1.26965 1.28871 1.84267 1.21289 0.96587 0.81387 0.94323 0.88463 1.22393 0.99451 0.99333 0.97052 1.21947 0.94610 0.99217 1.00016 1.20468 0.98036 1.03082 0.90339 1.21032 0.93587 0.99890 0.95198 0.86520 1.23253 0.84201 0.79058 0.80677 1.90761 1.66246 1.44245 1.38307 1.84526 1.44497 1.38207 1.65439 1.21525 0.95622 0.94723 1.02051 0.92744 0.96382 0.96844 0.91795 0.91834 0.88055 0.88009 0.86699 0.86411 0.89111 0.89830 0.72939 0.89232 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.12 13.96 55.43 0.77 -27.34 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.09 -1.84 4.44 -26.73 -0.12 -1.96 16 11 C -0.11 -1.77 5.81 -27.89 -0.16 -1.93 16 12 C 0.46 7.15 7.92 36.00 0.29 7.44 16 13 O -0.50 -9.15 15.19 -18.75 -0.28 -9.44 16 14 O -0.35 -4.72 9.85 -39.25 -0.39 -5.11 16 15 C 0.12 1.33 2.70 -28.18 -0.08 1.25 16 16 H 0.10 1.15 7.14 -51.93 -0.37 0.78 16 17 C -0.16 -1.64 9.40 -35.90 -0.34 -1.97 16 18 C -0.14 -1.04 9.80 -35.90 -0.35 -1.40 16 19 C -0.08 -0.50 5.37 -28.18 -0.15 -0.65 16 20 C -0.08 -0.56 2.68 -91.55 -0.25 -0.80 16 21 H 0.12 0.70 8.12 -51.93 -0.42 0.28 16 22 C 0.49 3.79 7.61 36.00 0.27 4.07 16 23 O -0.51 -5.68 16.67 -18.75 -0.31 -6.00 16 24 O -0.51 -2.68 13.36 -39.25 -0.52 -3.20 16 25 C -0.10 -0.94 4.37 -26.51 -0.12 -1.06 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 28 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 29 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 30 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 31 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 34 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 37 H 0.41 0.54 9.10 45.56 0.41 0.95 16 38 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 39 H 0.09 0.86 7.90 -51.93 -0.41 0.45 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -34.96 332.82 -6.87 -41.83 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.94 Total: -1.72 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -1.54 Total: -10.97 kcal Atomic # 7 Polarization: -28.12 SS G_CDS: 0.77 Total: -27.34 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -1.51 Total: -23.75 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.96 -6.87 -41.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064599.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.280 kcal (2) G-P(sol) polarization free energy of solvation -34.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds