Wall clock time and date at job start Tue Mar 31 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99742 * 2 1 4 4 H 1.48497 * 109.47248 * 269.72347 * 3 2 1 5 5 H 1.48496 * 109.47375 * 29.72617 * 3 2 1 6 6 H 1.48502 * 109.46879 * 149.72891 * 3 2 1 7 7 C 1.37875 * 120.00276 * 179.72503 * 2 1 3 8 8 C 1.51272 * 120.84903 * 0.27511 * 7 2 1 9 9 C 1.53235 * 108.53619 * 128.62771 * 8 7 2 10 10 C 1.52964 * 109.40195 * 54.62913 * 9 8 7 11 11 H 1.08994 * 109.41288 * 56.50557 * 10 9 8 12 12 C 1.52997 * 109.40910 * 176.29518 * 10 9 8 13 13 O 1.45206 * 109.46958 * 184.99949 * 12 10 9 14 14 C 1.34227 * 116.99735 * 179.97438 * 13 12 10 15 15 O 1.20828 * 120.00396 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99643 * 179.97438 * 14 13 12 17 17 H 1.08993 * 115.54680 * 62.12606 * 16 14 13 18 18 C 1.53000 * 117.49748 * 207.83016 * 16 14 13 19 19 C 1.52998 * 117.49979 * 276.45288 * 16 14 13 20 20 H 1.09002 * 117.49791 * 144.99922 * 19 16 14 21 21 C 1.50702 * 117.50054 * 0.02562 * 19 16 14 22 22 O 1.20824 * 120.00066 * 275.45497 * 21 19 16 23 23 O 1.34232 * 120.00060 * 95.45398 * 21 19 16 24 24 C 1.52957 * 109.81847 * 296.39889 * 10 9 8 25 25 C 1.51275 * 120.85343 * 179.97438 * 7 2 1 26 26 H 0.97001 * 120.00189 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.62339 * 248.34398 * 8 7 2 28 28 H 1.08997 * 109.62312 * 8.91455 * 8 7 2 29 29 H 1.09005 * 109.47876 * 174.60811 * 9 8 7 30 30 H 1.08997 * 109.48338 * 294.63292 * 9 8 7 31 31 H 1.09005 * 109.47086 * 304.99723 * 12 10 9 32 32 H 1.09000 * 109.47278 * 64.99883 * 12 10 9 33 33 H 1.08995 * 117.49985 * 214.97922 * 18 16 14 34 34 H 1.08998 * 117.50262 * 0.02562 * 18 16 14 35 35 H 0.96697 * 116.99976 * 179.97438 * 23 21 19 36 36 H 1.08993 * 109.48045 * 183.58143 * 24 10 9 37 37 H 1.09004 * 109.47996 * 303.62266 * 24 10 9 38 38 H 1.09004 * 109.62184 * 351.08922 * 25 7 2 39 39 H 1.08999 * 109.62389 * 111.65271 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5024 2.0431 -1.4000 5 1 1.4436 2.6544 0.6942 6 1 3.5437 1.4419 0.7058 7 6 2.0045 -1.1940 0.0057 8 6 1.2677 -2.5151 0.0058 9 6 1.8273 -3.3851 -1.1248 10 6 3.3437 -3.5091 -0.9675 11 1 3.5739 -3.9121 0.0186 12 6 3.8908 -4.4519 -2.0411 13 8 5.3104 -4.6639 -1.8213 14 6 5.9462 -5.4733 -2.6829 15 8 5.3369 -5.9872 -3.5910 16 6 7.4203 -5.7400 -2.5183 17 1 7.7080 -6.2322 -1.5894 18 6 8.2213 -6.0809 -3.7765 19 6 8.3935 -4.7163 -3.1063 20 1 9.3215 -4.5350 -2.5641 21 6 7.8046 -3.5180 -3.8052 22 8 7.4826 -3.5943 -4.9672 23 8 7.6379 -2.3660 -3.1368 24 6 3.9950 -2.1334 -1.1192 25 6 3.5171 -1.2164 0.0053 26 1 -0.4850 0.8400 0.0004 27 1 1.4164 -3.0171 0.9619 28 1 0.2043 -2.3412 -0.1581 29 1 1.3748 -4.3757 -1.0791 30 1 1.5976 -2.9244 -2.0856 31 1 3.3681 -5.4069 -1.9866 32 1 3.7376 -4.0095 -3.0255 33 1 9.0363 -6.7975 -3.6755 34 1 7.6823 -6.1118 -4.7234 35 1 7.2568 -1.6250 -3.6274 36 1 5.0789 -2.2370 -1.0698 37 1 3.7143 -1.7023 -2.0802 38 1 3.8981 -0.2085 -0.1590 39 1 3.8779 -1.5959 0.9613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601079216.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:39 Heat of formation + Delta-G solvation = -171.204350 kcal Electronic energy + Delta-G solvation = -22673.452039 eV Core-core repulsion = 19160.235006 eV Total energy + Delta-G solvation = -3513.217033 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.10137 -40.02322 -37.78200 -36.85565 -36.11413 -35.83896 -32.61296 -29.91860 -29.26090 -26.53383 -25.60669 -24.21688 -21.66145 -21.17973 -21.07420 -20.32899 -19.18320 -18.57939 -17.77038 -16.99966 -16.75946 -16.13815 -15.82278 -15.29669 -14.92118 -14.43242 -13.95361 -13.54588 -13.34490 -12.92330 -12.78608 -12.56802 -12.32467 -12.02194 -11.79678 -11.73015 -11.38036 -11.30181 -11.12549 -10.87443 -10.80474 -10.78737 -10.71002 -10.37325 -10.31599 -9.96597 -9.82660 -9.45842 -8.85558 -8.57772 -8.45607 -6.09029 -3.99194 1.76066 2.06785 2.44786 2.71456 3.26987 3.29298 3.35910 3.37656 4.07309 4.16060 4.39230 4.53088 4.80648 4.93562 5.14268 5.22503 5.28956 5.31770 5.38080 5.62203 5.65920 5.96354 6.03201 6.30391 6.30692 6.49525 6.58330 6.69952 6.78615 6.94053 7.03658 7.11236 7.18032 7.44637 7.67356 7.67837 7.72426 7.76472 7.84401 8.40919 8.98561 9.56255 11.00829 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.023327 B = 0.004541 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.048356 B = 6164.025419 C = 6956.156660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.487 4.487 8 C 0.011 3.989 9 C -0.102 4.102 10 C -0.071 4.071 11 H 0.071 0.929 12 C 0.071 3.929 13 O -0.341 6.341 14 C 0.476 3.524 15 O -0.498 6.498 16 C -0.134 4.134 17 H 0.156 0.844 18 C -0.114 4.114 19 C -0.143 4.143 20 H 0.154 0.846 21 C 0.501 3.499 22 O -0.505 6.505 23 O -0.501 6.501 24 C -0.101 4.101 25 C -0.015 4.015 26 H 0.264 0.736 27 H 0.005 0.995 28 H 0.058 0.942 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.416 0.584 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.028 0.972 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.830 -9.501 -4.248 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.506 4.506 8 C -0.026 4.026 9 C -0.140 4.140 10 C -0.090 4.090 11 H 0.089 0.911 12 C -0.002 4.002 13 O -0.257 6.257 14 C 0.318 3.682 15 O -0.386 6.386 16 C -0.153 4.153 17 H 0.173 0.827 18 C -0.151 4.151 19 C -0.161 4.161 20 H 0.171 0.829 21 C 0.342 3.658 22 O -0.393 6.393 23 O -0.313 6.313 24 C -0.139 4.139 25 C -0.052 4.052 26 H 0.074 0.926 27 H 0.023 0.977 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.276 0.724 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 16.497 -9.850 -4.616 19.761 hybrid contribution 0.045 1.418 -0.391 1.472 sum 16.542 -8.432 -5.007 19.230 Atomic orbital electron populations 1.69832 1.06170 1.26882 1.50090 1.24850 0.94706 0.98568 0.94671 0.86665 0.79981 0.83349 0.78392 1.20503 1.21693 1.19168 1.20064 0.89457 0.91438 1.49658 1.19364 0.98569 0.92909 0.91761 1.21645 0.91890 0.98368 1.02098 1.21123 0.96651 0.94650 0.96546 0.91074 1.23571 0.75176 1.00272 1.01214 1.86528 1.26648 1.60360 1.52193 1.22445 0.89341 0.76577 0.79834 1.90688 1.67902 1.48052 1.31916 1.21907 0.87277 1.03558 1.02532 0.82656 1.23280 1.01091 0.93989 0.96711 1.21822 1.01610 0.87751 1.04967 0.82884 1.22197 0.74967 0.83846 0.84768 1.90762 1.46710 1.84017 1.17790 1.84509 1.76506 1.22327 1.47914 1.21508 0.97135 0.94741 1.00542 1.19661 0.96551 0.95028 0.94007 0.92637 0.97696 0.92331 0.94903 0.92922 0.91652 0.91583 0.85464 0.86112 0.72426 0.94005 0.93414 0.95338 0.96491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 12.73 55.43 0.71 -24.99 16 2 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 3 Si 0.89 21.09 27.26 -169.99 -4.63 16.46 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.13 6.48 56.52 0.37 -5.76 16 7 C -0.49 -12.77 5.52 -98.92 -0.55 -13.32 16 8 C 0.01 0.28 5.97 -27.48 -0.16 0.11 16 9 C -0.10 -2.14 5.22 -26.63 -0.14 -2.27 16 10 C -0.07 -1.36 2.33 -90.66 -0.21 -1.57 16 11 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 12 C 0.07 1.21 4.84 37.16 0.18 1.39 16 13 O -0.34 -5.49 9.68 -39.25 -0.38 -5.87 16 14 C 0.48 7.01 6.64 36.01 0.24 7.25 16 15 O -0.50 -8.71 16.36 -18.75 -0.31 -9.02 16 16 C -0.13 -1.29 6.29 -91.77 -0.58 -1.87 16 17 H 0.16 0.98 8.14 -51.93 -0.42 0.55 16 18 C -0.11 -0.92 9.56 -26.73 -0.26 -1.18 16 19 C -0.14 -1.26 6.30 -91.77 -0.58 -1.84 16 20 H 0.15 0.82 8.14 -51.93 -0.42 0.39 16 21 C 0.50 6.17 7.08 36.01 0.25 6.42 16 22 O -0.51 -7.81 17.14 -18.75 -0.32 -8.13 16 23 O -0.50 -5.60 13.42 -39.26 -0.53 -6.12 16 24 C -0.10 -2.05 5.14 -26.87 -0.14 -2.19 16 25 C -0.01 -0.35 5.56 -27.72 -0.15 -0.50 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 28 H 0.06 1.59 7.07 -51.93 -0.37 1.22 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 32 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 33 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.12 1.29 7.56 -51.93 -0.39 0.90 16 35 H 0.42 3.31 9.10 45.56 0.41 3.73 16 36 H 0.04 0.78 7.71 -51.93 -0.40 0.38 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.03 0.65 4.79 -51.93 -0.25 0.40 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 327.28 15.07 4.93 4.93 Total: -1.00 -33.25 327.28 -7.53 -40.78 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.81 Total: -0.41 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.19 Total: -7.62 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.71 Total: -24.99 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -1.54 Total: -29.15 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.63 Total: 16.46 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.25 -7.53 -40.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601079216.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.426 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds