Wall clock time and date at job start Tue Mar 31 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99758 * 2 1 4 4 H 1.48506 * 109.46922 * 269.99959 * 3 2 1 5 5 H 1.48497 * 109.47449 * 29.99993 * 3 2 1 6 6 H 1.48503 * 109.47011 * 150.00194 * 3 2 1 7 7 C 1.37877 * 120.00492 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.85361 * 180.02562 * 7 2 1 9 9 C 1.53245 * 108.48300 * 128.58457 * 8 7 2 10 10 C 1.52958 * 109.39758 * 54.73683 * 9 8 7 11 11 H 1.09002 * 109.41515 * 56.36409 * 10 9 8 12 12 C 1.52999 * 109.41606 * 176.22640 * 10 9 8 13 13 O 1.45206 * 109.46777 * 295.14093 * 12 10 9 14 14 C 1.34224 * 117.00077 * 179.97438 * 13 12 10 15 15 O 1.20833 * 120.00103 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00302 * 180.02562 * 14 13 12 17 17 C 1.50704 * 115.55143 * 34.32401 * 16 14 13 18 18 O 1.20824 * 119.99707 * 145.58581 * 17 16 14 19 19 O 1.34221 * 119.99880 * 325.58990 * 17 16 14 20 20 C 1.53003 * 117.49920 * 248.62293 * 16 14 13 21 21 C 1.53006 * 60.00072 * 252.50611 * 20 16 14 22 22 C 1.52963 * 109.76008 * 296.29681 * 10 9 8 23 23 C 1.51271 * 120.84367 * 359.97438 * 7 2 1 24 24 H 0.97003 * 120.00618 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.62308 * 248.34219 * 8 7 2 26 26 H 1.08996 * 109.62070 * 8.72240 * 8 7 2 27 27 H 1.09005 * 109.54381 * 294.72457 * 9 8 7 28 28 H 1.08994 * 109.42755 * 174.67455 * 9 8 7 29 29 H 1.09000 * 109.47486 * 175.14145 * 12 10 9 30 30 H 1.09001 * 109.47362 * 55.13422 * 12 10 9 31 31 H 0.96694 * 117.00342 * 179.97438 * 19 17 16 32 32 H 1.09005 * 117.49862 * 359.97438 * 20 16 14 33 33 H 1.08998 * 117.50254 * 145.01812 * 20 16 14 34 34 H 1.08993 * 117.49745 * 252.51069 * 21 20 16 35 35 H 1.08996 * 117.51467 * 107.47411 * 21 20 16 36 36 H 1.08999 * 109.48154 * 183.61505 * 22 10 9 37 37 H 1.09002 * 109.47869 * 303.63849 * 22 10 9 38 38 H 1.09001 * 109.62452 * 111.66198 * 23 7 2 39 39 H 1.08992 * 109.62790 * 351.08527 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 6 3.5171 -1.2164 0.0000 9 6 3.9890 -2.1307 1.1357 10 6 3.3397 -3.5071 0.9829 11 1 3.5741 -3.9110 -0.0021 12 6 3.8822 -4.4479 2.0606 13 8 5.3020 -4.6630 1.8451 14 6 5.9344 -5.4702 2.7112 15 8 5.3220 -5.9799 3.6197 16 6 7.4083 -5.7399 2.5514 17 6 8.2261 -4.5896 2.0232 18 8 9.3601 -4.4277 2.4077 19 8 7.6948 -3.7448 1.1256 20 6 7.8275 -7.1527 2.1401 21 6 8.0713 -6.6685 3.5709 22 6 1.8225 -3.3828 1.1334 23 6 1.2677 -2.5151 -0.0005 24 1 -0.4851 0.8400 0.0004 25 1 3.8779 -1.6000 -0.9543 26 1 3.8980 -0.2072 0.1566 27 1 3.7031 -1.6983 2.0946 28 1 5.0732 -2.2334 1.0917 29 1 3.3580 -5.4021 2.0074 30 1 3.7273 -4.0025 3.0433 31 1 8.2576 -3.0220 0.8162 32 1 7.0370 -7.8873 1.9854 33 1 8.6948 -7.2504 1.4871 34 1 9.0989 -6.4476 3.8591 35 1 7.4413 -7.0840 4.3573 36 1 1.3703 -4.3735 1.0879 37 1 1.5891 -2.9204 2.0925 38 1 1.4200 -3.0192 -0.9549 39 1 0.2037 -2.3408 0.1590 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601079363.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:37 Heat of formation + Delta-G solvation = -167.400769 kcal Electronic energy + Delta-G solvation = -22615.626340 eV Core-core repulsion = 19102.574243 eV Total energy + Delta-G solvation = -3513.052097 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.21777 -39.98886 -37.84826 -36.87953 -36.08455 -35.74893 -32.60259 -29.87877 -29.27054 -27.00737 -24.98287 -23.10354 -22.98791 -21.53457 -21.07161 -20.12454 -19.24485 -18.67365 -17.85997 -16.71883 -16.53146 -16.15987 -15.67463 -15.47326 -14.55717 -14.44406 -14.06283 -13.59622 -13.33426 -12.92627 -12.75367 -12.53331 -12.08931 -12.02517 -11.80429 -11.74138 -11.64458 -11.31173 -11.08663 -10.97222 -10.84754 -10.77668 -10.67130 -10.34586 -10.24594 -9.99531 -9.81163 -9.39579 -8.82913 -8.56972 -8.43148 -6.07957 -3.98132 1.58006 2.06140 2.53352 2.67000 3.21925 3.28090 3.36564 3.37105 4.01382 4.20234 4.39845 4.51533 4.77664 5.06483 5.14071 5.24010 5.33817 5.37006 5.40458 5.57803 5.68055 5.98785 6.05393 6.25228 6.32701 6.51304 6.58651 6.72359 6.81570 6.96277 7.05516 7.14541 7.20619 7.46388 7.63579 7.68835 7.73225 7.76957 7.85443 8.42028 8.99654 9.57155 11.01815 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.026406 B = 0.004241 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.112264 B = 6601.118961 C = 7357.695346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.485 4.485 8 C -0.021 4.021 9 C -0.100 4.100 10 C -0.070 4.070 11 H 0.071 0.929 12 C 0.070 3.930 13 O -0.325 6.325 14 C 0.499 3.501 15 O -0.504 6.504 16 C -0.159 4.159 17 C 0.525 3.475 18 O -0.513 6.513 19 O -0.483 6.483 20 C -0.117 4.117 21 C -0.109 4.109 22 C -0.102 4.102 23 C 0.011 3.989 24 H 0.263 0.737 25 H 0.017 0.983 26 H 0.032 0.968 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.415 0.585 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.032 0.968 37 H 0.052 0.948 38 H 0.004 0.996 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.746 -11.900 3.721 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.505 4.505 8 C -0.059 4.059 9 C -0.138 4.138 10 C -0.089 4.089 11 H 0.089 0.911 12 C -0.003 4.003 13 O -0.240 6.240 14 C 0.341 3.659 15 O -0.393 6.393 16 C -0.162 4.162 17 C 0.367 3.633 18 O -0.402 6.402 19 O -0.293 6.293 20 C -0.154 4.154 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.026 4.026 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.274 0.726 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.023 0.977 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.389 -12.164 4.205 19.305 hybrid contribution 0.571 1.503 -0.095 1.611 sum 14.960 -10.660 4.110 18.824 Atomic orbital electron populations 1.69834 1.06149 1.26841 1.50262 1.24853 0.94703 0.98553 0.94708 0.86692 0.80014 0.83376 0.78447 1.20467 1.21736 1.18960 1.20082 0.89535 0.91416 1.49420 1.19822 0.96567 0.95522 0.93942 1.21561 0.97216 0.94615 1.00420 1.21107 0.96534 0.94696 0.96528 0.91071 1.23598 0.75192 1.00205 1.01324 1.86606 1.26396 1.60011 1.51011 1.21678 0.87782 0.76555 0.79843 1.90676 1.67272 1.49124 1.32241 1.20542 0.90622 0.92743 1.12285 1.21453 0.84390 0.81472 0.76005 1.90730 1.19294 1.72505 1.57650 1.84664 1.49233 1.40385 1.55062 1.23261 1.03832 0.89254 0.99072 1.23339 1.02628 0.95521 0.93097 1.21636 0.91968 0.98299 1.02078 1.19356 0.98574 0.92933 0.91759 0.92668 0.96503 0.94941 0.93432 0.93934 0.91710 0.91435 0.72620 0.86250 0.86345 0.85752 0.85636 0.94954 0.92929 0.97729 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 12.73 55.43 0.71 -24.98 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.89 21.04 27.53 -169.99 -4.68 16.36 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.06 6.11 56.52 0.35 -5.71 16 7 C -0.49 -12.69 5.51 -98.92 -0.55 -13.23 16 8 C -0.02 -0.49 5.60 -27.48 -0.15 -0.64 16 9 C -0.10 -2.03 5.15 -26.63 -0.14 -2.17 16 10 C -0.07 -1.32 2.33 -90.66 -0.21 -1.53 16 11 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 12 C 0.07 1.16 4.84 37.16 0.18 1.34 16 13 O -0.33 -5.15 8.23 -45.54 -0.37 -5.52 16 14 C 0.50 7.21 7.49 36.00 0.27 7.48 16 15 O -0.50 -8.14 16.01 -18.76 -0.30 -8.44 16 16 C -0.16 -1.80 2.58 -156.81 -0.41 -2.20 16 17 C 0.52 6.28 7.86 36.01 0.28 6.56 16 18 O -0.51 -6.88 17.02 -18.75 -0.32 -7.20 16 19 O -0.48 -5.42 11.97 -45.53 -0.54 -5.96 16 20 C -0.12 -0.90 9.94 -26.73 -0.27 -1.17 16 21 C -0.11 -0.93 9.56 -26.72 -0.26 -1.18 16 22 C -0.10 -2.10 5.21 -26.65 -0.14 -2.24 16 23 C 0.01 0.27 5.97 -27.51 -0.16 0.11 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.75 4.59 -51.93 -0.24 0.51 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.04 0.79 7.72 -51.93 -0.40 0.39 16 29 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 30 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 31 H 0.41 2.80 9.10 45.56 0.41 3.22 16 32 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.12 0.96 7.67 -51.93 -0.40 0.56 16 35 H 0.13 1.04 7.67 -51.93 -0.40 0.64 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 39 H 0.06 1.57 7.07 -51.93 -0.37 1.20 16 LS Contribution 324.83 15.07 4.90 4.90 Total: -1.00 -31.78 324.83 -7.07 -38.85 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.81 Total: -1.04 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -1.64 Total: -6.96 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.71 Total: -24.98 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -1.54 Total: -27.13 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.68 Total: 16.36 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.78 -7.07 -38.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601079363.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.550 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds