Wall clock time and date at job start Tue Mar 31 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09011 * 110.88136 * 54.30037 * 11 10 9 13 13 C 1.55153 * 111.01013 * 178.17855 * 11 10 9 14 14 C 1.54368 * 102.92223 * 153.54913 * 13 11 10 15 15 N 1.47023 * 107.28806 * 337.86602 * 14 13 11 16 16 C 1.34779 * 125.64916 * 178.94496 * 15 14 13 17 17 O 1.21574 * 119.99966 * 179.97438 * 16 15 14 18 18 C 1.47616 * 119.99788 * 359.95423 * 16 15 14 19 19 N 1.31875 * 126.46250 * 0.02792 * 18 16 15 20 20 N 1.28463 * 110.15577 * 179.97438 * 19 18 16 21 21 H 0.96996 * 124.93096 * 180.02562 * 20 19 18 22 22 C 1.35730 * 110.13423 * 0.02562 * 20 19 18 23 23 C 1.35542 * 107.11853 * 359.71836 * 22 20 19 24 24 F 1.35097 * 127.24357 * 180.25877 * 23 22 20 25 25 C 1.47423 * 108.70195 * 358.90529 * 15 14 13 26 26 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 29 29 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 30 30 H 1.09002 * 110.72499 * 271.94833 * 13 11 10 31 31 H 1.09009 * 110.71673 * 35.21940 * 13 11 10 32 32 H 1.09003 * 109.90485 * 218.42701 * 14 13 11 33 33 H 1.08997 * 109.97687 * 97.34392 * 14 13 11 34 34 H 1.08000 * 126.44266 * 179.97438 * 22 20 19 35 35 H 1.08997 * 110.36616 * 265.28782 * 25 15 14 36 36 H 1.09004 * 110.45952 * 143.01626 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3595 -4.7291 -0.8257 13 6 1.8030 -6.1832 -0.0448 14 6 0.7998 -7.1425 0.6307 15 7 -0.0947 -6.3243 1.4626 16 6 -1.1231 -6.7874 2.2005 17 8 -1.7988 -6.0158 2.8533 18 6 -1.4293 -8.2313 2.2156 19 7 -0.7841 -9.1762 1.5598 20 7 -1.3143 -10.3217 1.7986 21 1 -1.0084 -11.1637 1.4266 22 6 -2.3646 -10.1827 2.6470 23 6 -2.4676 -8.8638 2.9417 24 9 -3.3723 -8.2758 3.7546 25 6 0.3202 -4.9136 1.3567 26 1 -0.4850 0.8401 0.0004 27 1 0.3557 -2.3880 0.0005 28 1 2.6849 -3.7145 -0.8894 29 1 2.6848 -3.7144 0.8905 30 1 1.9922 -6.4848 -1.0751 31 1 2.7332 -6.1370 0.5216 32 1 1.3341 -7.8589 1.2547 33 1 0.2212 -7.6704 -0.1273 34 1 -2.9967 -10.9748 3.0206 35 1 0.9901 -4.6527 2.1759 36 1 -0.5515 -4.2591 1.3572 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690734813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:24 Heat of formation + Delta-G solvation = 16.864260 kcal Electronic energy + Delta-G solvation = -21634.568779 eV Core-core repulsion = 18070.632210 eV Total energy + Delta-G solvation = -3563.936569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.81623 -42.98950 -39.72359 -37.47772 -34.62540 -32.62343 -31.76330 -30.89945 -30.29583 -28.61653 -25.97386 -24.21309 -22.90806 -22.08415 -21.86532 -20.06883 -19.66410 -18.70011 -17.32738 -16.87751 -16.66448 -16.17394 -15.98582 -15.30942 -15.26208 -14.75571 -14.55045 -14.31263 -13.60184 -13.35826 -13.12607 -12.95857 -12.58343 -12.50248 -12.14985 -11.72205 -11.32708 -11.15279 -10.80593 -10.59172 -10.54942 -10.36996 -10.09298 -9.97830 -9.91356 -9.62962 -9.29185 -8.82978 -8.48270 -6.88061 -5.70768 -3.00325 1.16312 1.51581 2.26900 2.94640 3.25773 3.48330 3.52353 3.53900 3.84525 4.23951 4.46866 4.56754 4.65764 4.78614 4.86952 5.04670 5.11195 5.44299 5.60320 5.63786 5.78035 5.94081 5.98366 6.04051 6.12062 6.15257 6.31339 6.37929 6.44027 6.52437 6.73676 6.87449 7.24111 7.58152 7.73910 8.18774 8.47451 9.58493 10.15763 10.50093 11.51809 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.032520 B = 0.003385 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.810642 B = 8269.607428 C = 8994.540660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.085 0.915 13 C -0.127 4.127 14 C 0.111 3.889 15 N -0.603 5.603 16 C 0.608 3.392 17 O -0.521 6.521 18 C -0.020 4.020 19 N -0.229 5.229 20 N -0.373 5.373 21 H 0.456 0.544 22 C -0.040 4.040 23 C 0.038 3.962 24 F -0.099 7.099 25 C 0.116 3.884 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.024 0.976 29 H 0.022 0.978 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.198 0.802 35 H 0.074 0.926 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 -26.661 2.115 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.104 0.896 13 C -0.165 4.165 14 C -0.012 4.012 15 N -0.337 5.337 16 C 0.393 3.607 17 O -0.395 6.395 18 C -0.182 4.182 19 N -0.066 5.066 20 N -0.089 5.089 21 H 0.302 0.698 22 C -0.184 4.184 23 C 0.008 3.992 24 F -0.077 7.077 25 C -0.005 4.005 26 H 0.066 0.934 27 H 0.218 0.782 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.215 0.785 35 H 0.093 0.907 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.776 -26.231 1.844 26.308 hybrid contribution -0.560 0.533 0.485 0.913 sum -1.336 -25.699 2.328 25.838 Atomic orbital electron populations 1.69655 1.05095 1.25800 1.57435 1.24752 0.95511 0.97701 1.02935 0.86264 0.78500 0.83595 0.77787 1.21708 1.21266 1.21324 1.19165 0.90977 0.84155 1.43054 0.91220 1.42369 1.05927 0.99930 1.89548 1.20586 0.92722 0.84780 0.98192 1.22594 0.98180 0.94845 0.96878 0.89636 1.22701 0.98069 0.94535 1.01215 1.22070 0.91594 0.93601 0.93985 1.48343 1.29705 1.10000 1.45615 1.16316 0.80101 0.84310 0.79950 1.90884 1.49595 1.56081 1.42926 1.22215 0.98347 0.94992 1.02627 1.73782 1.21486 0.90705 1.20652 1.43075 1.22536 1.08614 1.34686 0.69827 1.22660 0.96985 0.97834 1.00969 1.17199 0.93305 0.90209 0.98491 1.91554 1.63507 1.83431 1.69243 1.22398 1.00062 0.80274 0.97763 0.93420 0.78171 0.95781 0.96005 0.89986 0.90354 0.91246 0.91108 0.78510 0.90748 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 4 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.71 5.49 -59.91 -0.33 -19.04 16 10 C 0.17 3.25 5.71 -4.04 -0.02 3.22 16 11 C -0.11 -1.69 3.07 -88.47 -0.27 -1.96 16 12 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 13 C -0.13 -1.51 6.42 -24.87 -0.16 -1.66 16 14 C 0.11 1.32 5.54 -3.04 -0.02 1.30 16 15 N -0.60 -9.40 3.33 -171.69 -0.57 -9.97 16 16 C 0.61 10.38 7.85 -12.43 -0.10 10.28 16 17 O -0.52 -10.92 16.93 5.30 0.09 -10.83 16 18 C -0.02 -0.27 6.98 -82.74 -0.58 -0.84 16 19 N -0.23 -2.31 9.74 33.43 0.33 -1.99 16 20 N -0.37 -2.19 6.86 30.64 0.21 -1.98 16 21 H 0.46 0.59 8.96 -190.45 -1.71 -1.11 16 22 C -0.04 -0.26 12.06 -16.79 -0.20 -0.47 16 23 C 0.04 0.45 8.03 -39.26 -0.32 0.14 16 24 F -0.10 -1.40 17.03 2.25 0.04 -1.36 16 25 C 0.12 2.02 6.23 -2.53 -0.02 2.01 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.38 10.40 7.63 -40.82 -0.31 10.09 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.43 8.03 -51.93 -0.42 0.02 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.88 8.04 -51.92 -0.42 0.46 16 32 H 0.07 0.75 7.77 -51.93 -0.40 0.35 16 33 H 0.07 0.79 7.65 -51.93 -0.40 0.39 16 34 H 0.20 0.45 8.06 -52.49 -0.42 0.03 16 35 H 0.07 1.33 7.96 -51.93 -0.41 0.92 16 36 H 0.09 1.73 8.04 -51.93 -0.42 1.31 16 LS Contribution 313.39 15.07 4.72 4.72 Total: -1.00 -36.30 313.39 -7.46 -43.76 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.72 Total: 2.50 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.93 Total: 4.53 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: 0.36 Total: -61.06 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.30 -7.46 -43.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690734813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.625 kcal (2) G-P(sol) polarization free energy of solvation -36.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds