Wall clock time and date at job start Tue Mar 31 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09011 * 110.88136 * 54.30037 * 11 10 9 13 13 C 1.55153 * 111.01013 * 178.17855 * 11 10 9 14 14 C 1.54368 * 102.92223 * 153.54913 * 13 11 10 15 15 N 1.47023 * 107.28806 * 337.86602 * 14 13 11 16 16 C 1.34779 * 125.64916 * 178.94496 * 15 14 13 17 17 O 1.21574 * 119.99966 * 179.97438 * 16 15 14 18 18 C 1.47616 * 119.99788 * 359.95423 * 16 15 14 19 19 N 1.31875 * 126.46250 * 0.02792 * 18 16 15 20 20 N 1.28463 * 110.15577 * 179.97438 * 19 18 16 21 21 H 0.96996 * 124.93096 * 180.02562 * 20 19 18 22 22 C 1.35730 * 110.13423 * 0.02562 * 20 19 18 23 23 C 1.35542 * 107.11853 * 359.71836 * 22 20 19 24 24 F 1.35097 * 127.24357 * 180.25877 * 23 22 20 25 25 C 1.47423 * 108.70195 * 358.90529 * 15 14 13 26 26 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 29 29 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 30 30 H 1.09002 * 110.72499 * 271.94833 * 13 11 10 31 31 H 1.09009 * 110.71673 * 35.21940 * 13 11 10 32 32 H 1.09003 * 109.90485 * 218.42701 * 14 13 11 33 33 H 1.08997 * 109.97687 * 97.34392 * 14 13 11 34 34 H 1.08000 * 126.44266 * 179.97438 * 22 20 19 35 35 H 1.08997 * 110.36616 * 265.28782 * 25 15 14 36 36 H 1.09004 * 110.45952 * 143.01626 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3595 -4.7291 -0.8257 13 6 1.8030 -6.1832 -0.0448 14 6 0.7998 -7.1425 0.6307 15 7 -0.0947 -6.3243 1.4626 16 6 -1.1231 -6.7874 2.2005 17 8 -1.7988 -6.0158 2.8533 18 6 -1.4293 -8.2313 2.2156 19 7 -0.7841 -9.1762 1.5598 20 7 -1.3143 -10.3217 1.7986 21 1 -1.0084 -11.1637 1.4266 22 6 -2.3646 -10.1827 2.6470 23 6 -2.4676 -8.8638 2.9417 24 9 -3.3723 -8.2758 3.7546 25 6 0.3202 -4.9136 1.3567 26 1 -0.4850 0.8401 0.0004 27 1 0.3557 -2.3880 0.0005 28 1 2.6849 -3.7145 -0.8894 29 1 2.6848 -3.7144 0.8905 30 1 1.9922 -6.4848 -1.0751 31 1 2.7332 -6.1370 0.5216 32 1 1.3341 -7.8589 1.2547 33 1 0.2212 -7.6704 -0.1273 34 1 -2.9967 -10.9748 3.0206 35 1 0.9901 -4.6527 2.1759 36 1 -0.5515 -4.2591 1.3572 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690734813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:24 Heat of formation + Delta-G solvation = -11.158686 kcal Electronic energy + Delta-G solvation = -21635.783945 eV Core-core repulsion = 18070.632210 eV Total energy + Delta-G solvation = -3565.151735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.73366 -43.73578 -40.98795 -38.84043 -36.44619 -34.10287 -32.95835 -31.93761 -31.54767 -29.99503 -27.50973 -25.74557 -24.27990 -23.20584 -22.86800 -21.40394 -20.68300 -19.57713 -19.09649 -18.21311 -17.64948 -17.24859 -16.97331 -16.63360 -16.43304 -16.10297 -15.79256 -15.44602 -15.26435 -15.10600 -14.63857 -14.11433 -13.93270 -13.61137 -13.51150 -13.11136 -12.98626 -12.69695 -12.33616 -12.16707 -12.05888 -11.85085 -11.61350 -11.57498 -11.40140 -10.91674 -10.68688 -10.08844 -9.72841 -8.98969 -7.93177 -5.22886 0.24726 0.78529 1.47560 1.51538 1.57585 1.60013 1.94623 2.07039 2.57372 2.92637 3.39308 3.47368 3.53285 3.65961 3.80877 3.86453 3.91400 4.20954 4.33538 4.41868 4.47245 4.60105 4.70488 4.84224 4.90226 4.99819 5.08652 5.13035 5.21067 5.27269 5.43295 5.51267 5.92295 6.28134 6.35801 6.54955 6.93457 7.34073 8.10654 8.32199 9.30380 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.032520 B = 0.003385 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.810642 B = 8269.607428 C = 8994.540660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.298 1.298 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.164 3.836 11 C -0.096 4.096 12 H 0.077 0.923 13 C -0.112 4.112 14 C 0.112 3.888 15 N -0.603 5.603 16 C 0.598 3.402 17 O -0.580 6.580 18 C -0.055 4.055 19 N -0.224 5.224 20 N -0.340 5.340 21 H 0.480 0.520 22 C 0.012 3.988 23 C -0.013 4.013 24 F -0.123 7.123 25 C 0.119 3.881 26 H 0.250 0.750 27 H 0.371 0.629 28 H 0.038 0.962 29 H 0.026 0.974 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.251 0.749 35 H 0.064 0.936 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.454 -30.196 1.196 30.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.805 3.195 4 H -0.224 1.224 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.038 3.962 11 C -0.115 4.115 12 H 0.095 0.905 13 C -0.150 4.150 14 C -0.009 4.009 15 N -0.335 5.335 16 C 0.386 3.614 17 O -0.458 6.458 18 C -0.214 4.214 19 N -0.063 5.063 20 N -0.060 5.060 21 H 0.332 0.668 22 C -0.134 4.134 23 C -0.043 4.043 24 F -0.102 7.102 25 C -0.004 4.004 26 H 0.059 0.941 27 H 0.203 0.797 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.130 0.870 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.267 0.733 35 H 0.082 0.918 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.079 -29.849 0.882 29.881 hybrid contribution -1.076 1.440 0.758 1.951 sum 0.003 -28.409 1.640 28.456 Atomic orbital electron populations 1.69840 1.06822 1.26114 1.59559 1.25639 0.96367 1.01392 1.03770 0.85167 0.77111 0.78917 0.78299 1.22444 1.20379 1.19986 1.19648 0.91658 0.85286 1.41135 0.90155 1.42644 1.05619 1.01456 1.89490 1.20769 0.93251 0.83598 0.98604 1.22416 0.97605 0.96156 0.95365 0.90452 1.22725 0.97838 0.91057 1.03345 1.22292 0.91181 0.93410 0.94048 1.48433 1.29932 1.09485 1.45669 1.16935 0.79528 0.85915 0.79064 1.90829 1.51583 1.58059 1.45374 1.21715 1.00613 0.93568 1.05527 1.73678 1.21239 0.91306 1.20040 1.43292 1.21284 1.08487 1.32946 0.66814 1.23295 0.95665 0.96518 0.97887 1.17735 0.93998 0.92316 1.00230 1.91479 1.64333 1.84212 1.70131 1.22165 0.98353 0.81317 0.98537 0.94114 0.79721 0.94398 0.95566 0.87003 0.89013 0.89270 0.89666 0.73318 0.91787 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.18 13.06 21.65 0.28 -61.89 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 3 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 4 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.25 -14.01 9.99 84.03 0.84 -13.18 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 9 N -0.75 -39.14 5.49 -343.47 -1.89 -41.02 16 10 C 0.16 6.39 5.71 86.38 0.49 6.88 16 11 C -0.10 -3.05 3.07 -9.40 -0.03 -3.08 16 12 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 13 C -0.11 -2.33 6.42 31.80 0.20 -2.13 16 14 C 0.11 2.43 5.54 86.74 0.48 2.91 16 15 N -0.60 -19.23 3.33 -815.37 -2.71 -21.94 16 16 C 0.60 21.50 7.85 86.72 0.68 22.18 16 17 O -0.58 -26.53 16.93 -3.95 -0.07 -26.60 16 18 C -0.05 -1.46 6.98 42.45 0.30 -1.17 16 19 N -0.22 -3.88 9.74 -48.15 -0.47 -4.35 16 20 N -0.34 -2.47 6.86 -56.99 -0.39 -2.86 16 21 H 0.48 -1.45 8.96 -220.00 -1.97 -3.43 16 22 C 0.01 0.11 12.06 83.47 1.01 1.12 16 23 C -0.01 -0.30 8.03 22.48 0.18 -0.12 16 24 F -0.12 -3.62 17.03 44.97 0.77 -2.86 16 25 C 0.12 4.37 6.23 86.85 0.54 4.91 16 26 H 0.25 15.56 8.31 -92.71 -0.77 14.78 16 27 H 0.37 21.09 7.63 -92.71 -0.71 20.38 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.03 1.02 8.03 -2.39 -0.02 1.00 16 30 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 1.73 8.04 -2.38 -0.02 1.71 16 32 H 0.09 1.64 7.77 -2.39 -0.02 1.62 16 33 H 0.09 1.64 7.65 -2.39 -0.02 1.62 16 34 H 0.25 -0.42 8.06 -2.91 -0.02 -0.45 16 35 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 36 H 0.04 2.01 8.04 -2.38 -0.02 1.99 16 Total: -1.00 -85.68 313.39 1.16 -84.52 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -1.55 Total: 13.55 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 5.16 Total: 14.07 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -5.18 Total: -132.08 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.07 Total: -26.60 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.77 Total: -2.86 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -85.68 1.16 -84.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690734813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.359 kcal (2) G-P(sol) polarization free energy of solvation -85.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds