Wall clock time and date at job start Tue Mar 31 2020 05:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46989 * 2 1 4 4 C 1.50699 * 109.47116 * 240.00571 * 2 1 3 5 5 O 1.21282 * 119.99881 * 240.00073 * 4 2 1 6 6 N 1.34781 * 120.00312 * 59.99546 * 4 2 1 7 7 C 1.46498 * 120.00209 * 180.27644 * 6 4 2 8 8 C 1.52997 * 109.47037 * 179.73019 * 7 6 4 9 9 N 1.46498 * 109.47037 * 179.97438 * 8 7 6 10 10 C 1.46505 * 119.99893 * 89.99662 * 9 8 7 11 11 C 1.36940 * 120.00179 * 269.99473 * 9 8 7 12 12 H 1.07996 * 119.99596 * 23.05272 * 11 9 8 13 13 C 1.38813 * 120.00193 * 203.04485 * 11 9 8 14 14 N 1.31622 * 119.99655 * 12.94097 * 13 11 9 15 15 Si 1.86795 * 119.99942 * 192.94201 * 13 11 9 16 16 H 1.48498 * 109.47239 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47281 * 119.99947 * 15 13 11 18 18 H 1.48501 * 109.46811 * 240.00108 * 15 13 11 19 19 C 1.50700 * 109.47069 * 120.00426 * 2 1 3 20 20 C 1.38421 * 122.53819 * 239.73442 * 19 2 1 21 21 C 1.33389 * 114.91797 * 179.76343 * 20 19 2 22 22 S 1.75876 * 109.59642 * 0.47726 * 21 20 19 23 23 C 1.33386 * 122.53560 * 60.02630 * 19 2 1 24 24 H 1.09002 * 109.47551 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46974 * 299.99685 * 1 2 3 26 26 H 1.08999 * 109.47159 * 59.99512 * 1 2 3 27 27 H 0.97000 * 119.99317 * 0.02562 * 6 4 2 28 28 H 1.09004 * 109.46886 * 299.72575 * 7 6 4 29 29 H 1.08992 * 109.46923 * 59.72636 * 7 6 4 30 30 H 1.09004 * 109.46920 * 299.99535 * 8 7 6 31 31 H 1.08992 * 109.47577 * 60.00017 * 8 7 6 32 32 H 1.09006 * 109.46625 * 95.12554 * 10 9 8 33 33 H 1.09000 * 109.47311 * 215.12080 * 10 9 8 34 34 H 1.08995 * 109.47503 * 335.12743 * 10 9 8 35 35 H 0.97000 * 119.99576 * 180.02562 * 14 13 11 36 36 H 1.08003 * 122.54258 * 0.02562 * 20 19 2 37 37 H 1.07999 * 125.20248 * 180.21027 * 21 20 19 38 38 H 1.07994 * 125.20822 * 359.97438 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7295 -1.6964 -1.1193 6 7 1.7066 -0.2498 -2.4547 7 6 2.1900 -0.9438 -3.6508 8 6 1.6754 -0.2257 -4.9000 9 7 2.1593 -0.9193 -6.0962 10 6 1.3652 -1.9986 -6.6886 11 6 3.3537 -0.5589 -6.6606 12 1 4.1033 -0.0591 -6.0651 13 6 3.6011 -0.8361 -7.9981 14 7 2.6147 -1.2072 -8.7866 15 14 5.3338 -0.6825 -8.6788 16 1 6.2548 -0.2531 -7.5960 17 1 5.7749 -1.9968 -9.2109 18 1 5.3492 0.3240 -9.7706 19 6 2.0323 -0.7105 1.2304 20 6 2.8350 -0.0907 2.1725 21 6 3.1875 -0.8597 3.2038 22 16 2.4988 -2.4657 3.0047 23 6 1.7417 -1.9859 1.4912 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.1492 0.5391 -2.5435 28 1 3.2800 -0.9442 -3.6551 29 1 1.8262 -1.9712 -3.6466 30 1 0.5854 -0.2252 -4.8957 31 1 2.0392 0.8018 -4.9042 32 1 0.7474 -1.5964 -7.4915 33 1 2.0318 -2.7617 -7.0905 34 1 0.7257 -2.4406 -5.9246 35 1 2.7876 -1.4012 -9.7211 36 1 3.1484 0.9389 2.0817 37 1 3.8053 -0.5456 4.0321 38 1 1.1343 -2.6260 0.8686 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753063751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:26 Heat of formation + Delta-G solvation = 15.645838 kcal Electronic energy + Delta-G solvation = -19447.064365 eV Core-core repulsion = 16416.995386 eV Total energy + Delta-G solvation = -3030.068979 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.05724 -37.85066 -36.01107 -34.19982 -33.19219 -31.25349 -29.00865 -27.93467 -25.87528 -25.47511 -23.79590 -22.47871 -20.66792 -20.08034 -18.70007 -17.87620 -16.94931 -16.59699 -15.86135 -15.14772 -15.02862 -14.58361 -14.10840 -13.76967 -13.57146 -13.21386 -13.15370 -12.84267 -12.55220 -12.47077 -12.31679 -12.24923 -11.78327 -11.53924 -11.17005 -10.90227 -10.87261 -10.79536 -10.59388 -10.34386 -9.94188 -9.93117 -9.55481 -8.83727 -8.68808 -8.57411 -8.46703 -6.80256 -5.74991 -3.23095 0.96323 1.59077 1.90642 2.56625 2.85551 3.37535 3.44759 3.47025 3.53260 4.49748 4.55400 4.71771 4.91266 5.07093 5.13919 5.23773 5.39118 5.49178 5.54564 5.58888 5.63083 5.81232 5.87260 5.92418 5.94932 6.24786 6.29098 6.39565 6.60992 6.65479 6.75820 6.90095 7.35629 7.70106 7.77238 7.79688 8.36269 8.47914 9.20508 9.82935 10.30943 11.29850 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.030324 B = 0.003076 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.137540 B = 9100.348689 C = 9437.952442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 H 0.103 0.897 4 C 0.511 3.489 5 O -0.534 6.534 6 N -0.723 5.723 7 C 0.095 3.905 8 C 0.144 3.856 9 N -0.598 5.598 10 C 0.161 3.839 11 C -0.259 4.259 12 H 0.069 0.931 13 C 0.003 3.997 14 N -0.906 5.906 15 Si 0.905 3.095 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.290 1.290 19 C -0.092 4.092 20 C -0.123 4.123 21 C -0.219 4.219 22 S 0.087 5.913 23 C -0.171 4.171 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.396 0.604 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.042 0.958 34 H -0.001 1.001 35 H 0.252 0.748 36 H 0.139 0.861 37 H 0.162 0.838 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.386 3.279 22.356 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 H 0.121 0.879 4 C 0.295 3.705 5 O -0.411 6.411 6 N -0.374 5.374 7 C -0.031 4.031 8 C 0.015 3.985 9 N -0.320 5.320 10 C 0.016 3.984 11 C -0.389 4.389 12 H 0.087 0.913 13 C -0.195 4.195 14 N -0.551 5.551 15 Si 0.735 3.265 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.217 1.217 19 C -0.104 4.104 20 C -0.154 4.154 21 C -0.355 4.355 22 S 0.350 5.650 23 C -0.306 4.306 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.229 0.771 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.017 0.983 35 H 0.063 0.937 36 H 0.157 0.843 37 H 0.180 0.820 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.815 1.140 23.060 23.585 hybrid contribution 0.752 1.663 -1.385 2.291 sum -4.063 2.803 21.675 22.230 Atomic orbital electron populations 1.21789 0.92089 1.03004 1.02802 1.20006 0.97408 0.99951 0.90223 0.87850 1.20427 0.80651 0.84912 0.84508 1.90717 1.37477 1.26248 1.86633 1.46071 1.53499 1.31861 1.06015 1.22406 1.00041 0.96802 0.83826 1.20835 0.96302 0.95142 0.86173 1.43792 1.22714 1.37840 1.27701 1.20837 0.93827 0.89925 0.93770 1.19241 0.91429 1.35893 0.92305 0.91292 1.25031 0.97605 1.01100 0.95769 1.70084 1.29409 1.50754 1.04854 0.86170 0.84173 0.77365 0.78764 1.20240 1.21527 1.21672 1.18348 1.01032 0.94178 0.96855 1.20034 0.99864 1.01337 0.94134 1.25471 1.08667 0.96846 1.04484 1.84204 1.48023 1.13242 1.19541 1.25352 1.06386 0.98930 0.99965 0.91968 0.91333 0.91523 0.77055 0.91661 0.92353 0.94129 0.92972 0.94856 0.93955 0.98286 0.93743 0.84347 0.82031 0.82147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.92 37.16 0.33 -0.81 16 2 C -0.05 -0.55 2.97 -92.93 -0.28 -0.82 16 3 H 0.10 0.88 8.03 -51.93 -0.42 0.47 16 4 C 0.51 7.51 7.05 -10.98 -0.08 7.44 16 5 O -0.53 -10.26 15.23 5.56 0.08 -10.17 16 6 N -0.72 -10.17 5.45 -60.30 -0.33 -10.50 16 7 C 0.10 1.74 6.00 -4.04 -0.02 1.71 16 8 C 0.14 2.83 5.76 -4.04 -0.02 2.80 16 9 N -0.60 -14.99 2.92 -181.12 -0.53 -15.52 16 10 C 0.16 3.98 8.98 59.85 0.54 4.52 16 11 C -0.26 -7.15 9.65 -15.06 -0.15 -7.30 16 12 H 0.07 1.87 7.86 -52.49 -0.41 1.46 16 13 C 0.00 0.10 5.10 -17.43 -0.09 0.01 16 14 N -0.91 -26.46 10.71 55.49 0.59 -25.86 16 15 Si 0.91 22.01 29.57 -169.99 -5.03 16.98 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 C -0.09 -1.07 4.28 -106.25 -0.46 -1.53 16 20 C -0.12 -1.28 9.92 -41.21 -0.41 -1.69 16 21 C -0.22 -2.13 11.23 29.04 0.33 -1.81 16 22 S 0.09 0.90 23.34 -107.50 -2.51 -1.61 16 23 C -0.17 -2.06 9.26 29.04 0.27 -1.79 16 24 H 0.06 0.55 7.75 -51.93 -0.40 0.15 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.46 7.56 -51.93 -0.39 0.07 16 27 H 0.40 4.26 7.89 -40.82 -0.32 3.94 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 31 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 32 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 33 H 0.04 1.13 7.34 -51.93 -0.38 0.74 16 34 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 35 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 36 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 37 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.16 1.93 7.94 -52.49 -0.42 1.52 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -32.82 332.39 -8.37 -41.19 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.63 Total: -0.25 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -0.04 Total: 0.74 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.26 Total: -51.88 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.61 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.82 -8.37 -41.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753063751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.833 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds